Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001169.1 Kokia drynarioides strain JFW-HI SEQ_112495, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12128
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.38


Found at i:120 original size:13 final size:13

Alignment explanation


    Indices: 104--128  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

         94 CCTCTCCTTC

                         
        104 TTCTTTCTTTCCT
          1 TTCTTTCTTTCCT

                        
        117 TTCTTTCTTTCC
          1 TTCTTTCTTTCC

        129 CGTATATTTG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68


Consensus pattern (13 bp):   
TTCTTTCTTTCCT

Found at i:3162 original size:24 final size:25

Alignment explanation


    Indices: 3134--3198  Score: 71
    Period size: 23  Copynumber: 2.6  Consensus size: 25

       3124 TAAGGCCTCC

                              *      
       3134 ATATTATTTTTAATTTTTTAT-ATT
          1 ATATTATTTTTAATTTTTAATAATT

                          *          
       3158 ATATTA-TTTTAATATTTAATAATT
          1 ATATTATTTTTAATTTTTAATAATT

            *           *    
       3182 TTATTTATTTTTTATTT
          1 ATA-TTATTTTTAATTT

       3199 ATTGAAAATT


Statistics
Matches: 33,  Mismatches: 5, Indels: 4
        0.79            0.12        0.10

Matches are distributed among these distances:
  23   12  0.36
  24   11  0.33
  25    3  0.09
  26    7  0.21

ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69


Consensus pattern (25 bp):   
ATATTATTTTTAATTTTTAATAATT
Done.