genome.fa.s11691.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011691.1 Kokia drynarioides strain JFW-HI SEQ_126685, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126793

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
900--984	23	3.7	23	88	0	125	10	23	18	47	1.80
903--999	46	2.1	46	83	7	117	10	24	18	46	1.80
900--1030	69	1.9	68	80	7	149	11	24	19	44	1.84
987--1067	23	3.6	22	81	5	90	13	22	25	38	1.91
14737--14798	28	2.2	28	82	0	70	25	20	24	29	1.99
14753--14830	28	2.8	28	90	0	111	24	17	23	34	1.96
26212--26895	138	5.0	137	86	4	907	41	9	5	44	1.58
26685--26895	70	3.1	71	63	24	162	41	7	6	45	1.56
28550--28608	22	2.6	23	91	2	93	11	0	42	45	1.41
32765--32822	22	2.4	23	80	13	64	65	12	8	13	1.47
32777--32822	22	2.0	23	87	8	67	63	15	8	13	1.52
33445--33476	16	2.0	16	93	0	55	71	12	9	6	1.29
36644--36787	22	6.4	22	76	13	125	18	1	36	44	1.58
36665--36787	22	5.5	22	79	9	133	17	0	38	43	1.54
36644--36792	45	3.3	45	83	7	169	17	1	36	44	1.57
39233--39257	2	12.5	2	100	0	50	0	0	48	52	1.00
40808--40842	18	1.9	18	94	0	61	20	17	20	42	1.89
46772--46836	29	2.2	29	83	8	78	40	20	6	33	1.77
46830--46906	30	2.6	30	83	4	102	38	16	6	37	1.75
58075--58200	50	2.5	50	85	0	144	36	16	24	22	1.94
58309--58556	79	3.1	79	91	0	397	30	26	16	26	1.97
58309--58555	39	6.2	40	77	2	239	30	25	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59676--59706	2	16.0	2	93	6	55	48	0	0	51	1.00
59679--59739	16	3.7	16	76	12	61	37	3	0	59	1.14
59679--59754	11	7.1	10	80	15	57	35	2	0	61	1.10
59697--59754	27	2.2	25	82	17	66	31	3	0	65	1.09
60485--60541	30	1.9	30	88	0	87	36	22	5	35	1.77
60520--60605	30	2.9	30	89	3	120	45	26	1	26	1.61
60490--60605	60	1.9	60	82	6	146	43	26	2	27	1.68
60535--60614	30	2.7	29	84	5	106	46	27	1	25	1.61
61910--61958	23	2.1	23	92	0	80	28	10	14	46	1.77
62633--62675	11	3.9	11	81	6	52	37	58	0	4	1.19
66588--66778	93	2.0	94	91	1	312	19	21	8	50	1.74
76649--76678	14	2.2	14	94	5	53	30	23	10	36	1.87
98362--98420	26	2.2	28	84	6	77	64	3	20	11	1.41
98534--98616	30	2.8	29	82	10	96	55	3	8	32	1.47
107223--107295	22	3.3	22	74	11	60	53	2	1	42	1.23
107652--107729	27	2.9	28	79	5	90	43	1	1	53	1.16
110695--110741	23	2.0	25	83	8	62	12	10	10	65	1.46
112459--112504	23	2.0	23	82	0	56	54	2	17	26	1.54
112593--112647	22	2.6	21	85	5	83	47	10	21	20	1.80
117675--117729	22	2.6	21	88	5	92	49	10	20	20	1.78
120655--120715	6	10.5	6	72	13	56	45	1	1	50	1.21
120658--120713	11	4.9	11	78	10	51	41	1	1	55	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120623--120732	52	2.1	52	82	0	130	45	1	1	50	1.22
120623--120720	35	2.8	34	84	7	117	43	1	2	53	1.19
120623--120734	17	6.5	17	82	4	107	45	1	1	50	1.22
122643--122842	29	6.8	29	86	6	260	35	30	2	32	1.71
122643--122844	59	3.4	59	88	2	282	35	30	2	31	1.73
122851--123477	196	3.1	199	84	7	835	35	19	24	19	1.95
123919--124027	17	6.4	17	81	2	119	45	1	1	50	1.23
123951--124010	6	10.5	6	72	16	56	46	1	1	50	1.21
125903--126317	29	14.1	29	78	10	396	36	27	2	33	1.72
125906--126318	59	7.0	59	82	6	437	37	26	2	33	1.72
126334--126411	29	2.7	29	72	9	70	32	25	2	39	1.69

Tables:   1

The End!