Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011693.1 Kokia drynarioides strain JFW-HI SEQ_126687, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6150
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.35

Warning! 157 characters in sequence are not A, C, G, or T


Found at i:553 original size:27 final size:27

Alignment explanation


    Indices: 497--553  Score: 69
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        487 ATAATTAATC

                        *    *       * 
        497 AAAAGTTATATCTTTTGGTTATTGATA
          1 AAAAGTTATATCATTTGATTATTGACA

                                *  *   
        524 AAAAGTTATATCATTTGATTTTTTACA
          1 AAAAGTTATATCATTTGATTATTGACA

               
        551 AAA
          1 AAA

        554 TATTATAACT


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  27   25  1.00

ACGTcount: A:0.39, C:0.05, G:0.11, T:0.46


Consensus pattern (27 bp):   
AAAAGTTATATCATTTGATTATTGACA

Found at i:4753 original size:37 final size:37

Alignment explanation


    Indices: 4703--4788  Score: 154
    Period size: 37  Copynumber: 2.3  Consensus size: 37

       4693 CTCATCACTC

                           *                     
       4703 TTCCCAATATTGGCTGTACTTAGCTACAACTATTATG
          1 TTCCCAATATTGGCTCTACTTAGCTACAACTATTATG

                                       *         
       4740 TTCCCAATATTGGCTCTACTTAGCTACTACTATTATG
          1 TTCCCAATATTGGCTCTACTTAGCTACAACTATTATG

                        
       4777 TTCCCAATATTG
          1 TTCCCAATATTG

       4789 TCCTCTCATC


Statistics
Matches: 47,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  37   47  1.00

ACGTcount: A:0.26, C:0.23, G:0.12, T:0.40


Consensus pattern (37 bp):   
TTCCCAATATTGGCTCTACTTAGCTACAACTATTATG
Done.