Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011695.1 Kokia drynarioides strain JFW-HI SEQ_126689, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3428
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.33

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:1181 original size:26 final size:26

Alignment explanation


    Indices: 1152--1209  Score: 89
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1142 TATTTTTTTT

                      *     *         
       1152 ACAATTTACTTATTTTTCTTAATTAA
          1 ACAATTTACTCATTTTCCTTAATTAA

                       *              
       1178 ACAATTTACTCCTTTTCCTTAATTAA
          1 ACAATTTACTCATTTTCCTTAATTAA

                  
       1204 ACAATT
          1 ACAATT

       1210 AATTATCAAA


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  26   29  1.00

ACGTcount: A:0.34, C:0.17, G:0.00, T:0.48


Consensus pattern (26 bp):   
ACAATTTACTCATTTTCCTTAATTAA

Found at i:1769 original size:26 final size:26

Alignment explanation


    Indices: 1740--1797  Score: 98
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1730 TATTTTTTTT

                      *               
       1740 ACAATTTACTTATTTTCCTTAATTAA
          1 ACAATTTACTCATTTTCCTTAATTAA

                       *              
       1766 ACAATTTACTCCTTTTCCTTAATTAA
          1 ACAATTTACTCATTTTCCTTAATTAA

                  
       1792 ACAATT
          1 ACAATT

       1798 AATTATCAAA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  26   30  1.00

ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47


Consensus pattern (26 bp):   
ACAATTTACTCATTTTCCTTAATTAA
Done.