genome.fa.s11702.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011702.1 Kokia drynarioides strain JFW-HI SEQ_126696, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  330312

Tables:   1   2   

This is table  1  of  2  ( 133 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1789--2232	192	2.3	192	78	8	443	27	27	18	27	1.98
4703--4734	16	2.0	16	93	0	55	25	18	3	53	1.59
9127--9156	2	15.0	2	92	0	51	53	0	0	46	1.00
14139--14195	25	2.3	24	84	6	69	80	8	5	5	1.00
19263--19310	21	2.3	22	78	10	55	16	6	33	43	1.73
23292--23364	33	2.2	34	80	5	85	65	0	0	34	0.93
23913--23955	23	2.0	21	82	13	52	46	6	4	41	1.51
27897--27930	17	2.1	17	94	5	61	23	0	5	70	1.09
43503--43578	36	2.1	36	85	0	98	43	15	3	36	1.66
43765--44125	45	7.5	45	70	14	229	43	18	5	32	1.72
43863--43925	29	2.2	29	94	0	108	42	20	1	34	1.62
43930--44125	90	2.2	90	89	0	293	42	17	6	32	1.75
43930--44148	45	4.8	45	81	3	226	41	18	6	33	1.76
44613--44884	28	9.6	28	76	5	215	51	8	15	24	1.72
44618--44876	57	4.6	57	81	3	265	52	8	15	23	1.70
44618--44884	85	3.1	85	80	6	308	51	8	15	23	1.72
45421--45547	63	2.0	63	100	0	254	33	18	9	39	1.83
52546--52595	18	2.7	18	81	3	55	80	0	16	4	0.87
56565--56772	39	5.4	39	79	3	195	39	17	16	25	1.91
57909--57962	22	2.5	21	77	14	56	42	9	7	40	1.65
59685--59755	30	2.4	28	80	13	72	42	4	5	47	1.46
62499--62536	20	2.0	20	89	5	60	42	0	5	52	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62500--62548	18	2.6	19	81	9	57	42	0	4	53	1.20
62505--62569	20	3.3	20	79	14	64	38	3	4	53	1.37
65534--65599	22	3.0	21	78	6	69	25	0	31	42	1.55
66502--66526	12	2.1	12	100	0	50	68	0	0	32	0.90
67615--67658	18	2.6	16	82	13	52	43	2	9	45	1.48
67615--67662	17	2.7	18	83	3	62	45	2	8	43	1.45
68226--68362	41	3.3	41	82	4	134	33	16	21	28	1.95
68568--68833	99	2.7	98	80	3	266	20	27	15	36	1.92
68750--69077	97	3.4	97	81	2	302	18	30	18	32	1.95
68523--68995	49	9.7	49	76	6	368	19	29	16	35	1.93
68518--69077	48	11.5	47	76	6	269	19	29	16	34	1.94
68518--69126	49	12.5	49	75	6	338	19	30	16	34	1.94
78146--78199	26	2.0	26	82	10	65	27	5	1	64	1.26
78789--78817	14	2.1	14	100	0	58	20	20	6	51	1.70
80359--80389	12	2.7	12	95	5	55	64	0	0	35	0.94
82340--82429	20	4.5	19	74	10	74	22	0	30	47	1.51
84202--84226	12	2.1	12	100	0	50	68	0	0	32	0.90
85446--85483	18	2.1	19	90	5	60	44	2	0	52	1.14
92317--92376	15	3.6	17	82	13	72	43	3	0	53	1.17
92338--92384	18	2.6	17	80	12	58	53	4	0	42	1.20
93156--93272	57	2.1	57	100	0	234	15	13	11	58	1.62
96332--96388	24	2.4	24	96	0	105	35	19	26	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96389--96426	13	2.8	14	80	8	51	18	2	0	78	0.86
96389--96432	21	2.1	21	86	0	61	15	2	4	77	1.04
101031--101701	333	2.0	333	95	0	1207	24	14	25	36	1.93
105424--105466	21	2.0	21	95	0	77	51	9	18	20	1.74
105593--105648	19	2.9	19	84	7	60	35	0	3	60	1.14
107348--107702	30	12.0	29	76	10	249	35	26	2	35	1.69
107337--107694	59	6.1	59	78	6	228	35	27	2	34	1.70
107337--107664	118	2.8	118	78	6	299	35	28	1	33	1.68
107359--107698	89	3.8	87	77	11	271	35	26	2	35	1.70
111349--111404	27	2.0	28	86	10	80	33	5	0	60	1.19
114594--114654	21	2.8	21	72	18	54	49	0	0	50	1.00
123733--123825	45	2.0	47	87	4	136	22	0	7	69	1.13
123745--123835	45	2.0	44	85	2	119	24	0	9	65	1.22
123794--124093	144	2.2	136	85	10	385	32	1	15	51	1.53
131195--131249	10	5.1	11	78	10	60	1	12	0	85	0.68
131195--131239	15	2.9	16	83	9	67	0	13	0	86	0.57
131195--131249	21	2.6	20	83	16	67	1	12	0	85	0.68
131195--131249	15	3.6	15	82	2	65	1	12	0	85	0.68
131810--131880	17	4.1	18	76	8	58	53	12	14	19	1.72
131962--131993	3	10.7	3	100	0	64	0	31	0	68	0.90
134195--134234	14	2.9	14	82	14	55	67	0	17	15	1.23
142963--143012	23	2.2	23	96	0	91	52	2	4	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144843--144905	33	1.9	33	87	6	92	38	4	23	33	1.76
145073--145111	20	2.0	20	89	0	60	28	23	10	38	1.87
148080--148311	123	1.9	122	88	0	347	41	7	10	40	1.68
152244--152464	107	2.1	107	89	3	338	40	7	9	42	1.65
152394--152760	123	3.0	123	90	2	576	41	8	11	38	1.72
152619--152665	22	2.2	21	81	11	51	51	0	12	36	1.40
156004--156065	32	1.9	33	93	3	108	32	4	24	38	1.76
160303--160342	20	2.0	20	95	0	71	30	27	7	35	1.84
163176--163314	44	3.2	44	66	11	131	61	10	0	27	1.29
163183--163368	93	2.1	90	91	5	304	62	9	0	28	1.26
163300--163325	5	5.2	5	100	0	52	57	19	0	23	1.40
172660--172700	20	2.0	20	100	0	82	46	9	9	34	1.70
177763--177815	25	2.1	25	85	0	70	35	13	22	28	1.92
180732--180826	35	2.7	35	83	6	120	28	14	16	40	1.88
180952--181063	49	2.3	49	78	6	120	23	22	18	35	1.96
182713--182781	34	2.0	34	97	0	129	31	21	2	43	1.67
192659--192683	13	1.9	13	100	0	50	16	0	8	76	1.02
198282--198330	6	8.0	6	82	13	64	16	4	2	77	1.01
200342--200386	24	1.9	23	86	13	65	17	6	8	66	1.40
207920--207987	17	4.0	17	88	0	100	19	16	10	54	1.70
207920--207985	6	11.7	6	78	13	61	19	16	10	53	1.72
207937--207985	11	4.4	11	78	14	55	18	20	10	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212634--212951	121	2.6	122	92	2	530	37	10	9	43	1.71
212805--212848	22	2.0	22	82	8	54	27	11	2	59	1.44
219645--220237	123	4.8	121	85	6	793	37	11	8	41	1.73
219645--220237	244	2.4	245	89	2	924	37	11	8	41	1.73
221777--221891	57	2.0	57	98	0	221	23	22	12	41	1.87
231288--231340	15	3.3	15	79	10	52	9	35	1	52	1.45
232951--233022	21	3.4	21	75	3	65	27	25	11	36	1.90
233692--233792	36	2.8	37	88	5	154	23	25	15	34	1.95
234848--234890	21	2.0	22	81	4	52	27	13	9	48	1.73
242790--242893	36	2.9	36	75	0	109	22	24	18	35	1.95
251357--251393	18	2.1	18	100	0	74	16	16	10	56	1.66
258157--258194	20	1.9	20	94	0	67	15	39	5	39	1.70
281479--281523	21	2.1	21	95	0	81	6	4	11	77	1.09
281487--281536	11	4.6	11	77	5	57	2	4	14	80	0.95
283235--283284	15	3.4	15	73	13	50	16	4	4	76	1.10
296289--296320	7	4.6	7	100	0	64	0	43	0	56	0.99
300534--300576	18	2.3	18	80	11	52	65	0	0	34	0.93
300656--300714	15	3.9	15	76	8	50	57	1	3	37	1.25
300666--300725	29	2.1	30	84	6	79	60	0	5	35	1.19
300836--300877	21	2.0	21	85	4	57	54	0	0	45	0.99
302677--302753	31	2.5	31	85	6	95	40	1	9	49	1.43
304521--305689	585	2.0	585	97	0	2225	30	17	24	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309437--309470	17	1.9	18	88	5	52	44	8	5	41	1.60
309948--309985	15	2.4	16	86	4	51	63	0	5	31	1.17
312025--312273	39	6.3	38	78	10	180	26	19	22	32	1.97
312025--312695	38	17.5	39	71	16	324	25	18	22	33	1.96
312218--312320	40	2.7	38	76	11	93	26	17	19	36	1.94
312259--312389	65	2.0	65	82	5	158	24	21	19	34	1.97
312316--312695	78	4.9	77	85	3	485	24	16	24	34	1.96
312316--312695	155	2.4	156	86	2	523	24	16	24	34	1.96
312867--312968	42	2.4	42	80	3	107	19	22	13	44	1.86
313010--313179	49	3.5	49	78	3	180	19	25	15	39	1.91

Tables:   1   2