genome.fa.s11705.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011705.1 Kokia drynarioides strain JFW-HI SEQ_126699, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187767

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--37	2	18.5	2	100	0	74	48	0	0	51	1.00
4337--4483	42	3.5	41	78	8	143	26	25	11	36	1.90
5283--5326	20	2.2	20	83	4	52	34	15	2	47	1.58
5633--5819	99	1.9	99	88	0	284	38	19	10	31	1.86
10304--10429	27	4.7	27	92	0	216	25	18	25	30	1.98
10449--10582	24	5.6	24	86	1	180	29	21	22	26	1.99
12162--12206	14	3.1	14	81	12	56	0	11	13	75	1.05
27276--27701	158	2.7	158	87	3	592	31	23	20	24	1.98
28099--28131	17	1.9	17	100	0	66	36	30	3	30	1.73
29565--29619	20	2.9	18	84	10	67	52	5	0	41	1.24
30691--30766	37	2.1	37	97	0	143	34	11	34	19	1.89
32016--32058	21	2.2	20	87	8	61	53	4	9	32	1.53
34678--34719	18	2.3	18	87	0	57	23	9	45	21	1.81
35662--35704	18	2.3	18	84	11	52	60	0	0	39	0.97
39047--39086	17	2.4	17	87	4	55	50	7	2	40	1.44
40484--40569	43	2.0	42	93	2	145	43	22	5	29	1.76
50274--50363	18	4.9	18	78	9	92	17	21	28	32	1.96
50310--50370	19	3.3	19	79	2	70	24	19	29	26	1.99
52987--53035	19	2.5	20	83	9	75	71	0	28	0	0.86
55500--55536	16	2.3	16	100	0	74	48	29	8	13	1.71
56731--57168	194	2.3	194	80	5	456	27	24	17	30	1.97
57585--57630	22	2.0	23	87	4	67	32	17	0	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57624--57655	16	2.0	16	93	0	55	25	18	3	53	1.59
60759--60796	20	1.9	20	84	10	51	47	0	15	36	1.46
68922--68962	22	2.0	21	85	9	57	24	14	9	51	1.72
74989--75030	19	2.2	19	100	0	84	52	4	21	21	1.65
76093--76153	25	2.4	25	83	0	77	31	26	22	19	1.98
83394--83446	25	2.1	25	85	0	70	28	24	22	24	2.00
88900--88938	17	2.2	18	90	4	62	51	17	0	30	1.46
90933--90980	24	2.0	24	91	0	78	31	8	8	52	1.61
106322--106364	8	5.0	8	81	13	50	23	0	4	72	1.04
106327--106405	16	4.9	16	70	24	51	25	1	6	67	1.22
107435--107544	52	2.1	52	83	6	134	48	0	1	50	1.11
107468--107572	27	4.0	27	69	18	69	54	2	0	42	1.15
110215--110252	15	2.3	16	82	17	51	55	5	10	28	1.56
110222--110251	15	1.9	16	93	6	53	53	3	13	30	1.56
110525--110606	27	3.0	27	94	0	137	26	25	9	37	1.87
112966--113188	42	5.3	41	76	7	180	37	10	25	26	1.89
112966--113113	41	3.5	41	76	7	118	36	12	25	25	1.91
112961--113188	84	2.7	84	78	10	200	37	10	25	26	1.88
114912--115006	24	4.0	24	85	0	127	20	26	13	40	1.89
116249--116294	18	2.6	18	92	0	74	36	41	6	15	1.73
118602--118676	28	2.7	27	81	10	71	33	21	22	22	1.97
118784--118848	29	2.2	29	81	10	71	24	10	26	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120072--120120	22	2.3	22	82	10	57	55	4	12	28	1.55
121036--121234	60	3.5	60	77	12	263	29	14	21	34	1.93
120990--121234	111	2.2	112	94	0	420	28	13	21	35	1.92
125384--125415	12	2.7	12	90	0	55	75	0	6	18	1.01
127392--127544	42	3.7	41	80	8	157	38	11	26	23	1.89
127392--127563	84	2.0	83	82	4	202	40	11	25	22	1.87
127430--127563	42	3.2	42	86	4	171	44	10	23	20	1.82
133864--133906	20	2.1	21	86	4	61	30	2	25	41	1.68
133956--134007	24	2.2	24	82	6	61	38	0	28	32	1.57
135125--135202	21	3.7	21	68	11	52	34	14	21	29	1.93
137758--137815	22	2.6	22	91	0	98	39	17	12	31	1.86
138175--138209	14	2.5	14	90	0	52	40	2	22	34	1.69
138579--138680	46	2.2	46	89	3	152	39	22	10	27	1.87
143832--143887	18	3.2	16	82	10	58	46	14	0	39	1.44
144061--144101	21	2.0	21	85	0	55	12	17	7	63	1.50
154696--154736	21	2.0	21	85	0	55	26	12	43	17	1.84
176617--176666	18	2.7	19	71	20	52	56	4	0	40	1.18
176842--176887	21	2.1	22	84	4	58	21	6	30	41	1.78
176850--176901	21	2.5	20	81	9	59	19	5	34	40	1.75
177502--178222	117	6.2	117	79	8	598	26	16	15	41	1.88
177456--178330	61	14.8	60	78	9	718	27	16	15	40	1.89
179685--179795	30	3.7	30	81	0	123	26	7	4	62	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180664--180821	60	2.6	60	80	5	185	44	13	12	29	1.79
180784--180903	41	3.0	41	88	2	190	46	14	6	32	1.70
180866--181209	60	5.8	59	77	10	344	41	15	15	27	1.88
180866--181259	117	3.3	118	84	7	460	42	15	14	27	1.86
180866--181260	60	6.7	60	74	13	232	42	15	14	27	1.86
180917--181260	118	2.9	117	83	8	403	42	15	14	27	1.86
184383--184423	18	2.2	19	86	4	57	46	7	4	41	1.53

Tables:   1

The End!