Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011729.1 Kokia drynarioides strain JFW-HI SEQ_126723, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80066
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Warning! 324 characters in sequence are not A, C, G, or T
Found at i:33 original size:4 final size:4
Alignment explanation
Indices: 26--64 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
16 TTCTTCCTTC
*
26 TTCT TTCT TTCT TTCT TTCT CTTTT TTCT TTCT TT-T TTC
1 TTCT TTCT TTCT TTCT TTCT -TTCT TTCT TTCT TTCT TTC
65 CTTCAATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 3 0.10
4 25 0.81
5 3 0.10
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTCT
Found at i:53 original size:21 final size:20
Alignment explanation
Indices: 24--68 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
14 CCTTCTTCCT
24 TCTTCTTTCTTTCTTTCTTTC
1 TCTTCTTTCTTTCTTT-TTTC
*
45 TCTTTTTTCTTTCTTTTTTC
1 TCTTCTTTCTTTCTTTTTTC
65 -CTTC
1 TCTTC
69 AATTTTCGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 4 0.18
21 15 0.68
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (20 bp):
TCTTCTTTCTTTCTTTTTTC
Found at i:683 original size:16 final size:16
Alignment explanation
Indices: 636--684 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
626 TATTGTCGAT
* *
636 AAAAATTAATTATGTA
1 AAAAATTAATTTTGAA
* *
652 ATAAATATATTTTTGAA
1 AAAAAT-TAATTTTGAA
669 AAAAATTAATTTTGAA
1 AAAAATTAATTTTGAA
685 TGTGTTATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
16 14 0.54
17 12 0.46
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (16 bp):
AAAAATTAATTTTGAA
Found at i:11483 original size:18 final size:18
Alignment explanation
Indices: 11449--11483 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11439 AATTTTATAA
*
11449 TTCAAATAACCCGAATAG
1 TTCAAATAACCCAAATAG
*
11467 TTCAAATAACTCAAATA
1 TTCAAATAACCCAAATA
11484 ATATATACAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.20, G:0.06, T:0.26
Consensus pattern (18 bp):
TTCAAATAACCCAAATAG
Found at i:16376 original size:17 final size:18
Alignment explanation
Indices: 16354--16388 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
16344 TAATTTAGAT
*
16354 TTAGTTGTTT-TATTTCC
1 TTAGTTATTTCTATTTCC
16371 TTAGTTATTTCTATTTCC
1 TTAGTTATTTCTATTTCC
16389 ATTTTTATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.14, C:0.14, G:0.09, T:0.63
Consensus pattern (18 bp):
TTAGTTATTTCTATTTCC
Found at i:17499 original size:21 final size:22
Alignment explanation
Indices: 17475--17528 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
17465 TATTTAAAGT
17475 TTTATTATTATTATTAT-AATA
1 TTTATTATTATTATTATCAATA
* *
17496 TTTAATATTATTATTATCATTA
1 TTTATTATTATTATTATCAATA
17518 TTT-TTA-TATTA
1 TTTATTATTATTA
17529 ATCATAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.17
21 18 0.62
22 6 0.21
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTATTATTATTATTATCAATA
Found at i:17523 original size:24 final size:23
Alignment explanation
Indices: 17477--17528 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
17467 TTTAAAGTTT
*
17477 TATTATTATTATTATAATATTTAA
1 TATTATTATTATCATAATATTT-A
* *
17501 TATTATTATTATCATTATTTTTA
1 TATTATTATTATCATAATATTTA
17524 TATTA
1 TATTA
17529 ATCATAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 6 0.24
24 19 0.76
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (23 bp):
TATTATTATTATCATAATATTTA
Found at i:29264 original size:24 final size:24
Alignment explanation
Indices: 29237--29285 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
29227 ATAATATTAG
29237 CTCTCACAAGCCCAGAATGGTTAA
1 CTCTCACAAGCCCAGAATGGTTAA
* * * *
29261 CTCTTACGATCCTAGAATGGTTAA
1 CTCTCACAAGCCCAGAATGGTTAA
29285 C
1 C
29286 CAGTATACGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (24 bp):
CTCTCACAAGCCCAGAATGGTTAA
Found at i:31771 original size:27 final size:28
Alignment explanation
Indices: 31719--31772 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 28
31709 TGATTTTAAT
31719 ATTATTAAAATTATTTTTAAAATATAAA
1 ATTATTAAAATTATTTTTAAAATATAAA
31747 ATTATTAAAATTA-TTTTAAAATATAA
1 ATTATTAAAATTATTTTTAAAATATAA
31773 TCATCATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (28 bp):
ATTATTAAAATTATTTTTAAAATATAAA
Found at i:32591 original size:18 final size:18
Alignment explanation
Indices: 32568--32658 Score: 68
Period size: 18 Copynumber: 5.3 Consensus size: 18
32558 GATGAGAAGA
*
32568 AAAAATGGTGTTAGATGG
1 AAAAATGGTGTTAGATAG
32586 AAAAATGGTG--AGA-AG
1 AAAAATGGTGTTAGATAG
* *
32601 AAGAAGTGGTGTTAGATGG
1 AA-AAATGGTGTTAGATAG
* *
32620 ATAAATGG-GTGAGA-AG
1 AAAAATGGTGTTAGATAG
*
32636 AAGAAATGGTGTTTGAT-G
1 AA-AAATGGTGTTAGATAG
32654 AAAAA
1 AAAAA
32659 ACGGGGAAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
15 3 0.05
16 12 0.21
17 14 0.25
18 25 0.45
19 2 0.04
ACGTcount: A:0.43, C:0.00, G:0.34, T:0.23
Consensus pattern (18 bp):
AAAAATGGTGTTAGATAG
Found at i:32611 original size:34 final size:35
Alignment explanation
Indices: 32560--32659 Score: 148
Period size: 34 Copynumber: 2.9 Consensus size: 35
32550 ACTTGGATGA
*
32560 TGAGAAGAAAAAATGGTGTTAGATGGAAAAAT-GG
1 TGAGAAGAAGAAATGGTGTTAGATGGAAAAATGGG
* *
32594 TGAGAAGAAGAAGTGGTGTTAGATGGATAAATGGG
1 TGAGAAGAAGAAATGGTGTTAGATGGAAAAATGGG
* *
32629 TGAGAAGAAGAAATGGTGTTTGATGAAAAAA
1 TGAGAAGAAGAAATGGTGTTAGATGGAAAAA
32660 CGGGGAAAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
34 29 0.50
35 29 0.50
ACGTcount: A:0.44, C:0.00, G:0.34, T:0.22
Consensus pattern (35 bp):
TGAGAAGAAGAAATGGTGTTAGATGGAAAAATGGG
Found at i:33131 original size:22 final size:21
Alignment explanation
Indices: 33105--33145 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
33095 TAATGACACA
33105 ACTTAAAAGCAAGCAAAATGAG
1 ACTTAAAAG-AAGCAAAATGAG
**
33127 ACTTAATTGAAGCAAAATG
1 ACTTAAAAGAAGCAAAATG
33146 TGAAGGGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (21 bp):
ACTTAAAAGAAGCAAAATGAG
Found at i:35703 original size:26 final size:26
Alignment explanation
Indices: 35657--35737 Score: 85
Period size: 26 Copynumber: 3.2 Consensus size: 26
35647 TGTATTTTTG
* *
35657 TATTTATGT-TTTTTAGA-TTATAAA
1 TATTTTTGTATTTTTATATTTATAAA
***
35681 TATTTTTGTATTTTTATATTTATTTG
1 TATTTTTGTATTTTTATATTTATAAA
* *
35707 CATTTTTGTATTTTAATATTTATAAA
1 TATTTTTGTATTTTTATATTTATAAA
35733 TATTT
1 TATTT
35738 AATAAAAGGA
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
24 8 0.18
25 7 0.16
26 29 0.66
ACGTcount: A:0.28, C:0.01, G:0.06, T:0.64
Consensus pattern (26 bp):
TATTTTTGTATTTTTATATTTATAAA
Found at i:35706 original size:18 final size:18
Alignment explanation
Indices: 35685--35719 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
35675 TATAAATATT
*
35685 TTTGTATTTTTATATTTA
1 TTTGCATTTTTATATTTA
*
35703 TTTGCATTTTTGTATTT
1 TTTGCATTTTTATATTT
35720 TAATATTTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.03, G:0.09, T:0.71
Consensus pattern (18 bp):
TTTGCATTTTTATATTTA
Found at i:37338 original size:24 final size:23
Alignment explanation
Indices: 37300--37372 Score: 85
Period size: 24 Copynumber: 3.1 Consensus size: 23
37290 ATTTGAGAAA
37300 TAATTT-TTTAGTTAAACTCTAT
1 TAATTTGTTTAGTTAAACTCTAT
*
37322 TAATTTGTTTCAGTTAAACTCTGT
1 TAATTTGTTT-AGTTAAACTCTAT
* *
37346 TTATTTGTTTGAGTCAAACTCTTAT
1 TAATTTGTTT-AGTTAAACTC-TAT
37371 TA
1 TA
37373 TTCTAGATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
22 6 0.14
23 3 0.07
24 30 0.71
25 3 0.07
ACGTcount: A:0.27, C:0.11, G:0.10, T:0.52
Consensus pattern (23 bp):
TAATTTGTTTAGTTAAACTCTAT
Found at i:58956 original size:20 final size:18
Alignment explanation
Indices: 58921--58955 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
58911 TAAAAAAATA
58921 ATTTTTAATTTATATATT
1 ATTTTTAATTTATATATT
58939 ATTTTTAAATTT-TATAT
1 ATTTTT-AATTTATATAT
58956 AAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
ATTTTTAATTTATATATT
Found at i:58966 original size:25 final size:26
Alignment explanation
Indices: 58932--58984 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
58922 TTTTTAATTT
**
58932 ATATATTATTTTTAA-ATTTTATATAA
1 ATATATTATTAATAATATTTTAT-TAA
58958 ATATA-TATTAATAATATTTTATTAA
1 ATATATTATTAATAATATTTTATTAA
58983 AT
1 AT
58985 GAAAATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (26 bp):
ATATATTATTAATAATATTTTATTAA
Found at i:59969 original size:19 final size:19
Alignment explanation
Indices: 59921--59971 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
59911 AAAAGTTATA
*
59921 TATATTTATTTATAATAAT
1 TATATTTAATTATAATAAT
* *
59940 TATAATTAATTA-ATTAAT
1 TATATTTAATTATAATAAT
59958 TAATATTTAATTAT
1 T-ATATTTAATTAT
59972 GTTTAAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATATTTAATTATAATAAT
Found at i:60704 original size:15 final size:16
Alignment explanation
Indices: 60678--60707 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
60668 TACCCAACTG
60678 ATTTATATATAATAAC
1 ATTTATATATAATAAC
60694 ATTTA-ATATAATAA
1 ATTTATATATAATAA
60708 TTACAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATTTATATATAATAAC
Found at i:63661 original size:12 final size:12
Alignment explanation
Indices: 63644--63671 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
63634 TACCACAATC
63644 TATGTAGTGGGA
1 TATGTAGTGGGA
63656 TATGTAGTGGGA
1 TATGTAGTGGGA
63668 TATG
1 TATG
63672 GTTGATCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.39, T:0.36
Consensus pattern (12 bp):
TATGTAGTGGGA
Found at i:64630 original size:125 final size:122
Alignment explanation
Indices: 64290--64635 Score: 443
Period size: 123 Copynumber: 2.8 Consensus size: 122
64280 GATTTTGTCA
* *
64290 AATATT-AAAACATGTATA-TTAATATCCTTTTGAAA-ATTATATAATGTTTTAATAAACATTTC
1 AATATTAAAAACATG-AAAGTTAATATCCTTTTGAAAGA--ATATAATGTTTTAATAAACCTTTC
* * * * *
64352 ATATATTTCTTTAAAAGAATATTTTCGTTTCAATATGAGGTATTAAATAAAAGGAAATTG
63 ATATATTTCTATAAAGGAATAATTTCGTTTTAATATGAGATATTAAATAAAAGGAAATTG
* *
64412 AATATTCAAAACATGAAAGTTAATATCCTTTTGGAAATG-ATATAATATTTTAATAAACC-TTCA
1 AATATTAAAAACATGAAAGTTAATATCCTTTT-GAAA-GAATATAATGTTTTAATAAACCTTTC-
* *
64475 ATATATTTCTCTAAAGGAAT-ATTTCTGTTTTAATATGAGATGTTAAATAAAAGGAAATTG
63 ATATATTTCTATAAAGGAATAATTTC-GTTTTAATATGAGATATTAAATAAAAGGAAATTG
* *
64535 AATATTAAAAAATATGGAAGTTAATATCCTTTTAGAAAGAATATAATGGTTTTAATAAACCTTTC
1 AATATT-AAAAACATGAAAGTTAATATCCTTTT-GAAAGAATATAAT-GTTTTAATAAACCTTTC
64600 ATATATTTCTATAAAGGAATAATTTCGTTTTAATAT
63 ATATATTTCTATAAAGGAATAATTTCGTTTTAATAT
64636 AAGGAAATAT
Statistics
Matches: 197, Mismatches: 15, Indels: 21
0.85 0.06 0.09
Matches are distributed among these distances:
122 15 0.08
123 95 0.48
124 38 0.19
125 41 0.21
126 8 0.04
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.40
Consensus pattern (122 bp):
AATATTAAAAACATGAAAGTTAATATCCTTTTGAAAGAATATAATGTTTTAATAAACCTTTCATA
TATTTCTATAAAGGAATAATTTCGTTTTAATATGAGATATTAAATAAAAGGAAATTG
Found at i:67153 original size:3 final size:3
Alignment explanation
Indices: 67145--67182 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
67135 TCAAAGTCCA
67145 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
67183 ACAAACCAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:73092 original size:3 final size:3
Alignment explanation
Indices: 73084--73112 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
73074 GGAGAAACAG
73084 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
73113 ACAGCAGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:76766 original size:31 final size:32
Alignment explanation
Indices: 76709--76780 Score: 94
Period size: 31 Copynumber: 2.3 Consensus size: 32
76699 TCGAGTTGGG
*
76709 TCATTTC-AGGTTTGGTCATTTTTGGATTTGAC
1 TCATTTCGA-GTTTGATCATTTTTGGATTTGAC
* *
76741 TTATTTCGAGTTTGATCA-TTTTGGATTTGAG
1 TCATTTCGAGTTTGATCATTTTTGGATTTGAC
76772 TCATTTCGA
1 TCATTTCGA
76781 ATTCGGATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 20 0.57
32 14 0.40
33 1 0.03
ACGTcount: A:0.18, C:0.11, G:0.21, T:0.50
Consensus pattern (32 bp):
TCATTTCGAGTTTGATCATTTTTGGATTTGAC
Found at i:78727 original size:35 final size:34
Alignment explanation
Indices: 78692--78787 Score: 124
Period size: 35 Copynumber: 2.8 Consensus size: 34
78682 ACCCATTTTA
78692 AAATTTATTTTAAGA-TTAAATTTATTTTGAA-TTT
1 AAATTTATTTTAA-ATTTAAATTTATTTT-AAGTTT
*
78726 AAATTTATTTTAAATTTTAAATTTAATTTAAGTTT
1 AAATTTATTTTAAA-TTTAAATTTATTTTAAGTTT
*
78761 AGATTTATATTTAAATTTAAATTTATT
1 AAATTTAT-TTTAAATTTAAATTTATT
78788 ATAAATATTG
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
33 1 0.02
34 15 0.27
35 33 0.60
36 6 0.11
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (34 bp):
AAATTTATTTTAAATTTAAATTTATTTTAAGTTT
Found at i:78732 original size:6 final size:6
Alignment explanation
Indices: 78707--78785 Score: 74
Period size: 6 Copynumber: 13.5 Consensus size: 6
78697 TATTTTAAGA
* * *
78707 TTAAAT TT-ATT TTGAAT TTAAAT TT-ATT TTAAATT TTAAAT TT-AAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAA-T TTAAAT TTAAAT
* * *
78753 TTAAGT TTAGAT TTATAT TTAAAT TTAAAT TTA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTA
78786 TTATAAATAT
Statistics
Matches: 59, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
5 13 0.22
6 40 0.68
7 6 0.10
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (6 bp):
TTAAAT
Found at i:78746 original size:18 final size:17
Alignment explanation
Indices: 78692--78793 Score: 125
Period size: 17 Copynumber: 5.9 Consensus size: 17
78682 ACCCATTTTA
78692 AAATTTATTTTAAGA-TT
1 AAATTTATTTTAA-ATTT
*
78709 AAATTTATTTTGAATTT
1 AAATTTATTTTAAATTT
78726 AAATTTATTTTAAATTTT
1 AAATTTATTTTAAA-TTT
* *
78744 AAATTTAATTTAAGTTT
1 AAATTTATTTTAAATTT
*
78761 AGATTTATATTTAAATTT
1 AAATTTAT-TTTAAATTT
*
78779 AAATTTATTATAAAT
1 AAATTTATTTTAAAT
78794 ATTGAAAGTG
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
16 1 0.01
17 42 0.58
18 30 0.41
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (17 bp):
AAATTTATTTTAAATTT
Found at i:79467 original size:3 final size:3
Alignment explanation
Indices: 79459--79484 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
79449 AATGAATTAG
79459 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
79485 GTAACAGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Done.