genome.fa.s11735.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011735.1 Kokia drynarioides strain JFW-HI SEQ_126729, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123511

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928--972	6	7.5	6	84	0	54	48	0	28	22	1.50
924--972	18	2.7	18	80	0	62	51	0	26	22	1.49
2681--2760	27	3.1	27	61	23	64	33	22	3	40	1.72
2671--2766	49	2.0	49	97	0	183	36	20	4	38	1.72
2823--2877	21	2.7	20	78	16	58	32	5	5	56	1.45
3346--3370	8	3.1	8	100	0	50	0	12	40	48	1.40
10483--10545	30	2.1	30	81	3	72	46	9	7	36	1.66
10751--10947	105	1.9	103	84	8	265	27	16	16	39	1.90
10841--11373	61	8.9	60	76	9	455	29	20	15	34	1.93
10841--11234	119	3.3	117	79	10	420	30	21	14	34	1.93
22963--23004	20	2.0	21	82	13	52	57	0	7	35	1.26
23576--23623	16	2.9	17	84	6	62	25	10	0	64	1.25
24703--24741	20	1.9	21	89	5	62	28	2	10	58	1.44
31418--31486	21	3.4	19	73	16	59	79	4	14	1	0.95
31430--31467	16	2.4	15	87	12	58	86	0	13	0	0.56
31441--31494	22	2.5	22	76	11	65	81	3	12	1	0.91
31430--31488	13	4.4	13	77	8	55	83	3	13	0	0.78
31418--31487	20	3.5	19	77	14	70	80	4	14	1	0.94
31895--32386	42	11.7	42	89	0	671	21	19	24	33	1.97
32376--32401	8	3.2	8	100	0	52	15	0	61	23	1.33
32292--32487	100	2.0	100	83	0	248	23	17	27	32	1.97
32805--32834	10	2.9	10	95	5	51	0	10	0	90	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32804--32834	15	2.1	14	94	5	53	0	9	0	90	0.46
32859--32926	3	22.7	3	96	0	127	33	33	0	32	1.58
32925--32969	3	15.0	3	100	0	90	33	0	0	66	0.92
33434--33862	147	2.9	146	85	6	549	43	2	9	44	1.51
33434--33800	147	2.5	148	89	3	562	41	3	8	46	1.51
33839--33906	33	2.0	33	83	8	84	35	2	10	51	1.51
42863--42915	17	3.2	15	77	17	52	41	5	1	50	1.36
42958--43015	24	2.4	24	85	5	73	50	0	6	43	1.29
43232--43282	16	3.2	17	75	13	54	45	0	7	47	1.32
43374--43410	7	5.1	7	90	3	56	54	0	0	45	1.00
43516--43548	17	1.9	17	93	0	57	42	6	0	51	1.26
43537--43586	18	2.8	18	87	3	66	28	4	8	60	1.43
43896--43946	10	5.1	10	76	13	52	47	5	1	45	1.38
44004--44071	30	2.3	29	85	12	93	39	1	7	51	1.39
44197--44229	17	2.0	17	88	5	50	39	0	0	60	0.97
44797--44826	14	2.1	14	100	0	60	46	20	13	20	1.83
44811--44876	22	3.1	22	62	16	57	37	13	12	36	1.82
44811--44888	22	3.6	22	65	13	54	41	15	11	32	1.83
44811--44897	42	2.1	42	91	0	138	39	14	11	34	1.83
45388--45412	13	1.9	13	100	0	50	80	0	0	20	0.72
45374--45428	18	3.1	18	81	5	76	72	0	3	23	1.00
45379--45449	35	2.0	36	81	13	85	71	1	4	22	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51097--51130	3	11.3	3	100	0	68	32	32	0	35	1.58
55700--55810	54	2.1	54	100	0	222	42	13	14	29	1.84
58454--58490	19	1.9	19	94	0	65	56	0	16	27	1.40
60936--60990	24	2.3	24	78	12	60	3	34	0	61	1.13
60937--60983	12	3.8	12	78	21	53	0	36	0	63	0.94
76063--76119	19	2.9	19	80	12	71	71	1	3	22	1.10
76046--76119	38	1.9	38	88	2	112	70	2	5	21	1.20
76063--76144	39	2.1	39	82	6	105	73	2	3	20	1.11
77518--77624	40	2.7	40	86	0	133	39	17	19	23	1.92
77599--77847	82	3.0	81	77	9	245	40	14	24	20	1.90
77599--77880	41	6.9	41	79	2	190	40	13	24	20	1.89
77599--77882	123	2.3	123	79	4	279	40	14	25	20	1.90
77640--77881	82	2.9	78	78	11	220	38	13	25	21	1.91
79216--79312	40	2.4	41	81	6	119	53	15	13	17	1.73
84673--84771	51	2.0	49	82	4	117	24	32	11	32	1.90
87051--87086	16	2.2	16	90	0	54	8	11	5	75	1.19
87517--87612	45	2.1	45	98	0	183	32	20	27	19	1.97
88660--88721	21	3.0	21	90	0	97	43	14	14	27	1.84
92748--92805	27	2.2	26	84	3	71	20	0	5	74	1.01
92748--92806	14	4.5	13	79	12	59	20	0	5	74	1.00
95161--95195	16	2.2	16	89	0	52	8	8	5	77	1.13
96649--96688	19	2.2	18	90	4	62	60	10	15	15	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98952--98989	15	2.7	14	84	11	51	71	2	7	18	1.23
114114--114176	24	2.7	23	85	7	74	31	11	17	39	1.85
115285--115404	58	2.1	58	87	4	172	33	0	17	48	1.53
116432--116481	26	1.9	26	87	0	73	38	12	24	26	1.90
116738--116790	19	2.8	18	80	5	52	37	0	1	60	1.08
120946--121080	59	2.3	59	89	0	198	42	14	13	29	1.84

Tables:   1

The End!