genome.fa.s11738.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011738.1 Kokia drynarioides strain JFW-HI SEQ_126732, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  180976

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60--91	15	2.0	17	88	11	50	62	0	0	37	0.95
779--862	17	4.9	17	82	2	105	57	4	2	35	1.33
779--874	17	5.6	17	80	4	86	58	4	2	35	1.29
11480--11619	69	2.0	69	87	0	199	40	10	8	40	1.69
11685--11741	30	1.9	29	82	10	71	22	3	3	70	1.18
11851--11881	16	1.9	16	93	0	53	22	0	0	77	0.77
17800--17855	21	2.6	21	91	2	85	78	5	1	14	1.00
20891--21132	121	2.0	119	95	3	432	25	18	23	32	1.97
25977--26094	32	3.9	32	73	15	106	24	16	10	49	1.76
25979--26115	32	4.5	32	74	11	99	24	16	10	48	1.78
25977--26166	91	2.1	90	83	2	238	24	15	12	47	1.80
26348--26509	31	5.4	31	68	14	122	47	11	17	23	1.80
26319--26509	61	3.2	58	82	3	220	47	11	17	24	1.80
26337--26509	59	2.9	60	82	2	222	47	10	17	23	1.79
28098--28123	7	3.7	7	100	0	52	0	0	26	73	0.84
29741--29783	19	2.2	20	84	12	54	37	0	6	55	1.27
40750--40818	20	3.5	20	72	21	72	46	0	0	53	1.00
40750--40818	9	6.8	11	73	25	55	46	0	0	53	1.00
42634--43135	250	2.0	250	95	0	896	37	19	13	29	1.90
43671--43704	12	2.8	12	81	0	50	23	23	0	52	1.47
44200--44243	22	2.0	22	82	8	54	47	4	0	47	1.22
50735--50792	31	1.9	31	85	3	82	41	15	6	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50889--50928	17	2.3	19	79	16	50	22	0	5	72	1.04
54796--54853	23	2.7	21	79	10	71	65	1	0	32	1.03
54803--54853	23	2.3	21	90	6	75	68	1	0	29	1.00
55463--55506	19	2.2	20	88	4	63	31	0	2	65	1.05
55540--55611	10	7.2	10	72	0	54	37	1	1	59	1.15
55667--55746	29	2.7	30	71	9	74	43	2	17	36	1.63
59032--59407	80	4.7	80	86	2	445	31	23	19	25	1.98
59112--59407	159	1.9	159	88	1	450	31	23	19	25	1.98
61921--62066	40	3.7	39	77	5	132	34	16	17	30	1.92
61945--62004	20	3.0	20	73	7	59	41	13	11	33	1.80
62994--63046	27	1.9	28	88	3	81	52	0	3	43	1.19
68903--68951	22	2.3	22	85	3	64	10	14	20	55	1.68
69063--69096	17	1.9	18	88	5	52	41	0	5	52	1.25
76228--76261	16	2.1	16	100	0	68	17	14	0	67	1.23
76798--76825	2	14.0	2	100	0	56	50	0	50	0	1.00
76926--76970	24	1.9	24	86	4	65	4	22	15	57	1.56
84920--84991	38	1.9	37	83	8	92	61	16	1	20	1.42
85571--85631	2	30.5	2	80	12	63	49	3	0	47	1.18
90707--90778	30	2.4	30	83	0	90	37	4	25	33	1.75
90699--90839	60	2.3	60	83	4	169	39	2	24	34	1.68
90737--90845	30	3.6	30	95	2	184	34	0	27	37	1.57
91317--91355	1	39.0	1	100	0	78	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91919--91943	13	1.9	13	100	0	50	8	0	8	84	0.79
94602--94647	23	2.0	23	86	0	65	30	0	2	67	1.03
98335--98360	2	13.0	2	100	0	52	50	0	0	50	1.00
98651--98684	14	2.5	14	90	4	52	70	8	14	5	1.31
109567--109663	39	2.5	40	83	3	117	16	21	18	43	1.88
121493--121545	21	2.5	21	78	0	52	28	28	13	30	1.94
123064--123395	161	2.1	161	90	3	526	28	15	14	41	1.87
123486--123529	22	2.0	22	95	0	79	47	9	25	18	1.77
125432--125645	94	2.3	94	93	0	356	24	23	29	22	1.99
127367--127413	9	5.1	9	76	23	53	53	0	0	46	1.00
127365--127405	19	2.0	21	90	9	68	48	0	0	51	1.00
127366--127415	19	2.7	20	73	20	54	52	0	0	48	1.00
128319--128396	11	7.6	11	73	16	62	44	1	1	52	1.17
128319--128396	20	3.9	20	71	18	72	44	1	1	52	1.17
131386--131419	17	1.9	18	88	5	52	55	0	2	41	1.15
132130--132295	81	2.0	81	98	0	323	37	10	22	30	1.87
146433--146467	6	5.8	6	86	0	52	45	2	2	48	1.32
147454--147479	2	13.0	2	100	0	52	50	0	0	50	1.00
149965--150001	19	1.9	19	88	0	56	24	5	8	62	1.44
151309--151357	22	2.2	22	77	0	53	42	24	2	30	1.66
151479--151519	16	2.5	17	84	7	59	48	19	0	31	1.49
159838--159954	58	2.0	58	100	0	234	37	11	10	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168893--168919	12	2.2	12	100	0	54	25	11	0	62	1.28
169777--169937	80	2.0	80	98	0	313	28	21	17	32	1.96
170899--170943	14	3.1	14	78	6	54	46	4	4	44	1.43
173987--174040	12	5.1	12	72	25	50	48	0	0	51	1.00
176947--176994	26	1.9	25	83	8	62	43	2	2	52	1.24
180880--180941	4	15.2	4	83	9	72	66	0	33	0	0.92
180880--180941	17	3.8	16	85	8	72	66	0	33	0	0.92
180880--180942	25	2.6	24	84	2	90	65	0	34	0	0.93

Tables:   1

The End!