genome.fa.s11739.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011739.1 Kokia drynarioides strain JFW-HI SEQ_126733, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  477670

Tables:   1   2   

This is table  2  of  2  ( 146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389160--389215	20	2.8	20	82	12	62	37	0	1	60	1.07
394926--394991	33	2.0	33	96	0	123	31	15	7	45	1.74
394929--394999	33	2.2	33	89	5	108	32	15	7	45	1.73
399658--399735	32	2.4	32	81	8	88	30	2	5	61	1.31
400674--400705	16	2.0	16	93	0	55	18	3	0	78	0.89
405390--405430	12	3.6	12	74	12	50	26	12	2	58	1.46
405389--405436	22	2.2	22	100	0	96	27	12	4	56	1.54
421017--421177	30	5.4	30	79	4	173	32	6	23	37	1.80
421012--421198	90	2.1	89	82	3	223	32	6	24	36	1.81
424171--424262	36	2.8	33	79	17	113	30	15	29	25	1.95
430311--430477	63	2.8	58	80	13	198	51	4	0	43	1.27
434664--434764	46	2.2	47	80	5	116	54	9	1	33	1.45
438109--438149	16	2.6	16	84	0	55	51	2	7	39	1.43
444670--444995	50	6.6	50	84	5	380	33	15	28	21	1.94
444743--444995	24	10.3	24	70	5	166	32	16	29	20	1.95
444681--444972	147	2.0	147	86	2	408	33	16	29	21	1.95
445575--445722	71	2.1	71	94	0	260	23	12	27	35	1.92
450069--450151	24	3.4	24	78	11	80	37	16	28	16	1.91
449982--450151	49	3.5	50	79	6	179	37	17	26	19	1.93
450786--450831	21	2.2	21	84	7	58	34	26	15	23	1.94
455031--455094	23	2.8	24	76	9	71	39	18	12	29	1.88
455960--456046	29	3.0	29	69	12	81	58	2	12	26	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456480--456506	2	13.5	2	100	0	54	51	0	48	0	1.00
461054--461142	23	3.8	23	80	11	99	15	26	19	38	1.92
464949--464986	17	2.3	17	86	4	51	60	2	23	13	1.45
477507--477551	20	2.2	21	84	4	56	53	8	13	24	1.68

Tables:   1   2

The End!