Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001174.1 Kokia drynarioides strain JFW-HI SEQ_112504, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4933
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:2265 original size:17 final size:17

Alignment explanation


    Indices: 2239--2287  Score: 55
    Period size: 17  Copynumber: 2.8  Consensus size: 17

       2229 TCTATAGAAA

                              
       2239 TTCTTATTCTTT-TATCT
          1 TTCTT-TTCTTTCTATCT

                          *   
       2256 TTCTCTTTCTTTCTTTCT
          1 TTCT-TTTCTTTCTATCT

                          
       2274 TTCTTTTCTCTTCT
          1 TTCTTTTCT-TTCT

       2288 TCCTCCCCTT


Statistics
Matches: 28,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  17   15  0.54
  18   13  0.46

ACGTcount: A:0.04, C:0.24, G:0.00, T:0.71


Consensus pattern (17 bp):   
TTCTTTTCTTTCTATCT

Found at i:2276 original size:18 final size:18

Alignment explanation


    Indices: 2253--2288  Score: 56
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       2243 TATTCTTTTA

                               
       2253 TCTTTCTCTTTCT-TTCTT
          1 TCTTTCT-TTTCTCTTCTT

                              
       2271 TCTTTCTTTTCTCTTCTT
          1 TCTTTCTTTTCTCTTCTT

       2289 CCTCCCCTTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    5  0.29
  18   12  0.71

ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72


Consensus pattern (18 bp):   
TCTTTCTTTTCTCTTCTT
Done.