genome.fa.s11743.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011743.1 Kokia drynarioides strain JFW-HI SEQ_126737, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  184780

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
727--874	23	6.3	23	82	6	181	11	23	22	42	1.86
727--902	48	3.8	44	79	10	156	11	24	21	42	1.86
727--902	23	7.5	23	79	9	176	11	24	21	42	1.86
10730--10777	21	2.3	21	85	0	60	39	14	25	20	1.91
11339--11366	9	3.1	9	100	0	56	10	10	32	46	1.73
11487--11511	11	2.3	11	100	0	50	16	0	0	84	0.63
14818--14873	20	2.8	19	81	5	58	46	10	7	35	1.66
21062--21104	2	21.5	2	100	0	86	0	51	0	48	1.00
25548--25588	19	2.1	20	82	13	50	26	31	0	41	1.56
33948--33972	12	2.1	12	100	0	50	36	0	0	64	0.94
44608--44664	23	2.5	23	94	2	98	21	43	22	12	1.85
50004--50157	76	2.0	76	94	0	272	31	13	19	35	1.91
51666--51873	104	2.0	104	100	0	416	37	5	24	32	1.79
59551--59785	51	4.6	51	83	2	274	32	14	22	30	1.94
62088--62119	15	2.1	16	94	5	57	50	12	18	18	1.78
65763--65828	29	2.3	29	77	15	66	43	3	6	46	1.43
67617--67649	17	1.9	17	88	11	50	48	3	0	48	1.17
67744--67782	20	2.0	18	85	14	51	43	0	2	53	1.14
70741--70786	23	2.0	23	91	0	74	45	8	6	39	1.61
70826--70874	27	1.9	27	88	12	77	34	2	2	61	1.19
71133--71175	21	2.0	21	86	0	59	39	2	18	39	1.64
74706--74763	23	2.5	23	91	2	89	12	25	18	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74778--74827	23	2.2	23	92	3	84	14	16	28	42	1.86
77114--77167	16	3.4	16	86	0	81	37	5	29	27	1.80
77337--77497	58	2.8	58	82	7	193	52	1	1	44	1.22
84203--84241	13	3.0	13	88	0	60	25	0	2	71	0.98
90195--90246	12	4.4	12	79	11	63	82	1	15	0	0.75
90196--90245	24	2.0	26	88	11	77	82	2	16	0	0.77
90198--90244	16	2.9	16	87	6	60	80	2	17	0	0.80
92609--92745	49	2.8	49	77	4	150	35	14	26	24	1.94
93075--93204	50	2.6	50	78	7	129	39	17	20	23	1.92
94081--94120	5	8.0	5	89	10	64	20	0	0	80	0.72
105063--105118	15	3.7	15	80	0	58	55	0	7	37	1.27
105095--105126	15	2.1	15	94	0	55	50	0	9	40	1.35
106386--106414	12	2.3	13	94	5	51	37	0	0	62	0.96
106489--106521	12	2.6	13	85	9	50	24	12	0	63	1.28
106643--106699	19	2.9	19	73	2	60	42	1	0	56	1.10
108478--108519	21	1.9	22	85	9	59	26	0	2	71	0.98
108482--108546	20	3.2	20	75	14	60	32	0	1	66	1.01
109094--109124	7	4.6	7	92	8	55	45	0	0	54	0.99
113545--113618	27	2.8	27	80	10	73	41	9	17	31	1.81
116732--117063	157	2.1	157	88	1	477	28	23	26	21	1.99
118780--118814	2	17.5	2	100	0	70	48	0	0	51	1.00
120428--120452	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120597--120657	23	2.7	23	84	0	86	26	19	19	34	1.96
127162--127267	29	3.7	28	76	10	106	38	0	24	35	1.62
127184--127435	29	8.6	29	73	11	140	38	2	23	36	1.68
127205--127363	87	1.8	87	83	5	214	36	3	23	36	1.71
127174--127453	59	4.8	59	80	6	241	36	2	23	36	1.70
128570--128625	15	3.3	16	77	18	60	30	0	3	66	1.09
128569--128627	18	3.2	18	75	20	59	30	0	3	66	1.08
129249--129274	10	2.6	10	100	0	52	57	0	0	42	0.98
129720--130084	78	4.7	77	82	4	401	25	18	31	24	1.98
129720--130126	39	10.5	39	69	3	219	26	18	30	24	1.98
129720--130103	156	2.5	155	85	3	486	25	18	30	25	1.98
129980--130103	38	3.2	37	68	7	86	26	20	28	24	1.99
135236--135261	3	8.7	3	100	0	52	0	30	0	69	0.89
144774--144815	14	3.0	14	83	10	59	69	4	7	19	1.31
144961--145181	29	7.7	28	77	8	196	35	4	25	34	1.78
144959--145218	58	4.5	58	76	10	210	34	4	26	34	1.77
145081--145210	28	4.5	30	77	11	119	33	3	26	36	1.72
146364--146419	3	17.7	3	75	17	51	32	0	1	66	1.03
146364--146419	15	3.3	16	77	18	60	32	0	1	66	1.03
146363--146421	18	3.2	18	75	20	59	32	0	1	66	1.02
147043--147086	6	7.8	6	80	14	58	52	0	2	45	1.13
147045--147086	16	2.5	17	96	3	77	54	0	2	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148222--148254	11	3.0	11	90	0	57	63	3	0	33	1.10
148581--148743	52	3.1	52	86	3	231	27	28	16	27	1.97
148600--148743	26	5.5	26	83	6	168	27	28	15	27	1.97
148600--148743	78	1.8	78	83	5	193	27	28	15	27	1.97
155868--155906	9	4.2	9	87	6	51	25	5	20	48	1.70
156269--156422	73	2.1	73	97	1	290	32	11	27	27	1.92
159432--159483	21	2.5	21	93	6	88	57	5	0	36	1.23
172850--172909	22	2.8	22	85	7	70	71	0	10	18	1.13
172850--172905	21	2.4	23	80	11	62	71	0	10	17	1.14
176927--176986	21	2.8	21	80	14	61	71	1	10	16	1.21
178969--179029	14	4.2	14	77	12	61	78	0	3	18	0.88
184361--184420	21	2.8	21	80	14	61	71	1	10	16	1.21

Tables:   1

The End!