genome.fa.s11752.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011752.1 Kokia drynarioides strain JFW-HI SEQ_126746, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  217851

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7390--7589	100	2.0	100	98	0	382	35	13	11	41	1.79
15279--15307	12	2.5	12	94	5	51	20	0	0	79	0.74
15774--15799	3	8.7	3	100	0	52	34	0	0	65	0.93
17639--17701	17	3.6	18	77	12	60	34	1	4	58	1.29
17662--17714	28	2.0	26	85	14	72	33	0	5	60	1.20
17653--17719	19	3.7	18	79	15	59	31	1	4	62	1.24
17718--17762	20	2.2	20	81	11	56	33	4	8	53	1.52
18752--18781	3	10.3	3	92	7	53	70	0	0	30	0.88
20944--20994	23	2.3	22	86	6	68	37	3	1	56	1.29
21605--21796	96	2.0	96	81	8	221	37	14	19	28	1.91
22145--22378	29	7.9	29	77	12	221	32	5	31	31	1.81
22149--22357	29	7.1	28	80	8	222	31	5	32	30	1.81
22145--22378	60	4.0	58	85	5	285	32	5	31	31	1.81
22154--22378	89	2.5	89	85	6	287	33	5	30	31	1.80
24118--24158	15	2.7	15	92	0	73	17	17	26	39	1.91
25481--25513	11	3.0	11	90	0	57	33	0	3	63	1.10
25504--25533	14	2.1	14	93	0	51	20	6	3	70	1.25
29151--29246	41	2.3	41	91	3	149	31	6	25	37	1.81
31687--31726	21	1.9	21	89	0	62	60	2	0	37	1.11
32764--32825	26	2.4	25	81	7	70	67	9	4	17	1.36
39004--39075	19	3.5	20	67	20	51	51	4	2	41	1.35
42013--42041	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66341--66398	29	2.0	30	89	3	91	48	15	6	29	1.71
66648--66685	15	2.6	15	84	15	53	39	2	0	57	1.12
66841--66879	16	2.5	15	84	15	53	35	2	2	58	1.25
66870--66942	29	2.5	30	81	2	76	47	6	5	39	1.53
73217--73287	20	3.5	20	69	16	56	43	28	4	23	1.72
73257--73320	27	2.4	27	86	5	85	40	29	4	25	1.76
73271--73327	14	4.1	14	78	13	64	36	29	8	24	1.86
76929--76987	27	2.2	27	93	0	100	38	3	10	47	1.54
76927--77000	27	2.5	28	85	12	96	41	2	8	47	1.47
82347--82436	35	2.5	36	83	3	119	45	10	15	28	1.78
110187--110245	25	2.3	26	83	13	70	44	3	0	52	1.17
123596--123631	6	6.0	6	100	0	72	66	0	16	16	1.25
128871--128913	21	2.2	20	91	8	70	69	4	2	23	1.18
134920--134966	23	2.2	20	85	11	58	68	6	8	17	1.37
134971--135010	20	2.0	20	85	9	55	67	27	0	5	1.11
135035--135086	13	3.9	13	78	14	61	75	21	3	0	0.97
136949--136994	23	2.0	23	100	0	92	39	17	4	39	1.69
146302--146335	13	2.7	13	90	4	52	61	2	0	35	1.11
146915--146950	18	1.9	19	88	5	56	55	5	0	38	1.23
148164--148222	30	1.9	30	82	6	73	45	10	1	42	1.48
149622--149706	29	3.0	29	85	1	109	14	7	24	54	1.65
154897--154950	28	1.9	28	92	0	90	29	12	22	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184441--184484	3	14.7	3	95	0	79	68	2	0	29	1.02
195519--195579	31	2.0	31	83	0	77	52	0	4	42	1.23
200710--200760	17	3.1	16	78	13	50	68	7	1	21	1.25
204595--204644	21	2.3	22	83	10	59	36	2	4	58	1.29
207192--207250	20	3.1	18	79	13	64	55	1	1	40	1.20
216616--216656	17	2.4	17	95	0	73	43	24	0	31	1.54
217071--217150	23	3.5	22	87	3	106	37	27	20	15	1.92
217043--217192	23	6.4	23	81	9	98	40	23	24	12	1.89

Tables:   1

The End!