Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011754.1 Kokia drynarioides strain JFW-HI SEQ_126748, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 895

Length: 1493
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.29

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:642 original size:30 final size:30

Alignment explanation


    Indices: 606--671  Score: 132
    Period size: 30  Copynumber: 2.2  Consensus size: 30

        596 CCTCCGATGG

                                          
        606 AGTACACTCCGGATTTACAGCCATCGGTGC
          1 AGTACACTCCGGATTTACAGCCATCGGTGC

                                          
        636 AGTACACTCCGGATTTACAGCCATCGGTGC
          1 AGTACACTCCGGATTTACAGCCATCGGTGC

                  
        666 AGTACA
          1 AGTACA

        672 TGCAGTGGTT


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   36  1.00

ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23


Consensus pattern (30 bp):   
AGTACACTCCGGATTTACAGCCATCGGTGC

Found at i:1029 original size:45 final size:44

Alignment explanation


    Indices: 956--1092  Score: 193
    Period size: 45  Copynumber: 3.0  Consensus size: 44

        946 GCATAGCTCA

                                                         
        956 TCAAGCCAAGGATATCAGCCTCAGTTTGACGAGCCATCGCAATAC
          1 TCAAGCCAAGGATATCAG-CTCAGTTTGACGAGCCATCGCAATAC

                                   *                     
       1001 TCAAGCCAAGGATATCAGCTTCAATTTGACGAGCCATCGCAATAC
          1 TCAAGCCAAGGATATCAGC-TCAGTTTGACGAGCCATCGCAATAC

                 **              *            *     *    
       1046 TCAAGGGAAGGATATCAGGCTGAGTTTGACGAGCTATCGCGATAC
          1 TCAAGCCAAGGATATCA-GCTCAGTTTGACGAGCCATCGCAATAC

              
       1091 TC
          1 TC

       1093 TATTCCTCCC


Statistics
Matches: 83,  Mismatches: 7, Indels: 4
        0.88            0.07        0.04

Matches are distributed among these distances:
  44    1  0.01
  45   80  0.96
  46    2  0.02

ACGTcount: A:0.31, C:0.25, G:0.23, T:0.22


Consensus pattern (44 bp):   
TCAAGCCAAGGATATCAGCTCAGTTTGACGAGCCATCGCAATAC
Done.