Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011762.1 Kokia drynarioides strain JFW-HI SEQ_126757, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6087
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35


Found at i:1002 original size:39 final size:39

Alignment explanation


    Indices: 920--1015  Score: 113
    Period size: 39  Copynumber: 2.5  Consensus size: 39

        910 CTAAACGGGC

                        *          *  *   *       *
        920 AGTGACACTGTAGACACTACAATGCTGTACTGAATCGGT
          1 AGTGACACTGTAAACACTACAATACTATACGGAATCGGA

                                    *               
        959 AGTGACACTGTAAACACTACAATATTATACGGAAAT-GGA
          1 AGTGACACTGTAAACACTACAATACTATACGG-AATCGGA

                        *     
        998 AGTGACACTGTATACACT
          1 AGTGACACTGTAAACACT

       1016 GAGATGTTAT


Statistics
Matches: 49,  Mismatches: 7, Indels: 2
        0.84            0.12        0.03

Matches are distributed among these distances:
  39   46  0.94
  40    3  0.06

ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25


Consensus pattern (39 bp):   
AGTGACACTGTAAACACTACAATACTATACGGAATCGGA
Done.