Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011765.1 Kokia drynarioides strain JFW-HI SEQ_126760, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2511
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35


Found at i:2450 original size:16 final size:17

Alignment explanation


    Indices: 2414--2450  Score: 51
    Period size: 16  Copynumber: 2.3  Consensus size: 17

       2404 TGTTATATAT

                *            
       2414 TTATATATTTATATGAA
          1 TTATTTATTTATATGAA

                             
       2431 -TATTTATTTATA-GAA
          1 TTATTTATTTATATGAA

                 
       2446 TTATT
          1 TTATT

       2451 ATATATTTAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 3
        0.82            0.05        0.14

Matches are distributed among these distances:
  15    3  0.17
  16   15  0.83

ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57


Consensus pattern (17 bp):   
TTATTTATTTATATGAA
Done.