Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001177.1 Kokia drynarioides strain JFW-HI SEQ_112507, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3307
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34


Found at i:2224 original size:29 final size:29

Alignment explanation


    Indices: 2191--2247  Score: 96
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       2181 AGGGTATAAG

                  *                      
       2191 TACACAGTTGAAAGTAGGACTCTAAAGAT
          1 TACACAATTGAAAGTAGGACTCTAAAGAT

                           *            
       2220 TACACAATTGAAAGTGGGACTCTAAAGA
          1 TACACAATTGAAAGTAGGACTCTAAAGA

       2248 ATAGCAAGGG


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   26  1.00

ACGTcount: A:0.42, C:0.14, G:0.21, T:0.23


Consensus pattern (29 bp):   
TACACAATTGAAAGTAGGACTCTAAAGAT
Done.