genome.fa.s11777.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011777.1 Kokia drynarioides strain JFW-HI SEQ_126772, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140136

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4360--5128	39	19.8	38	70	11	281	25	29	20	24	1.99
4360--4933	78	7.4	78	82	1	603	25	29	20	25	1.99
4359--5134	117	6.6	117	70	13	359	25	29	19	25	1.99
5594--5652	17	3.4	17	79	6	57	38	0	8	52	1.32
5594--5670	34	2.3	34	82	10	88	37	2	9	50	1.48
5593--5646	28	1.9	28	92	0	90	37	0	7	55	1.28
7232--7331	30	3.4	30	82	6	114	37	25	3	35	1.71
7256--7467	30	7.1	29	75	13	155	37	25	2	34	1.71
7305--7795	29	16.7	29	70	15	162	36	24	3	36	1.72
7304--7614	30	10.5	30	70	15	98	35	23	4	36	1.74
7636--7795	60	2.7	60	83	10	186	38	25	0	35	1.61
7717--7798	30	2.8	28	77	15	78	39	28	1	31	1.65
7536--7795	59	4.4	60	78	10	243	36	24	2	36	1.70
7717--7869	29	5.2	29	73	12	116	35	28	5	30	1.79
7538--7869	59	5.6	58	75	11	158	35	25	4	34	1.76
14412--14451	17	2.4	17	84	12	55	25	0	5	70	1.08
14390--14469	23	3.5	22	75	11	81	22	1	2	73	1.02
14478--14508	16	1.9	16	93	0	53	32	0	0	67	0.91
15331--15357	13	2.1	13	100	0	54	85	0	7	7	0.75
16186--16233	23	2.1	23	92	0	78	27	25	22	25	2.00
16193--16242	23	2.2	23	88	0	73	30	20	26	24	1.98
20709--20829	47	2.5	47	94	2	215	38	14	24	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20760--21123	201	1.8	200	87	3	543	35	17	23	23	1.95
21470--21505	18	2.0	18	94	0	63	41	0	0	58	0.98
21461--21508	12	4.3	11	80	12	53	37	0	0	62	0.95
21462--21531	29	2.4	29	81	9	72	41	1	1	55	1.17
23282--23338	30	1.9	30	85	0	78	38	24	1	35	1.66
23354--23714	29	12.3	28	66	20	127	31	26	3	37	1.75
23354--23682	59	5.6	59	83	8	327	31	26	4	37	1.76
23353--23680	177	1.9	177	81	10	402	31	26	4	37	1.76
23353--23713	118	3.1	116	81	9	394	31	26	3	37	1.75
36675--36703	12	2.4	12	100	0	58	55	17	6	20	1.65
51987--52040	21	2.6	21	100	0	108	35	25	9	29	1.87
68101--68139	6	6.5	6	87	0	51	23	30	0	46	1.53
70353--70542	94	2.0	93	95	2	353	22	24	24	28	1.99
75710--75774	24	2.9	22	80	15	62	6	16	6	70	1.28
75715--75755	21	2.0	21	90	9	66	7	14	7	70	1.31
85705--85738	14	2.5	14	90	4	52	41	0	5	52	1.25
88701--88742	9	4.7	9	85	8	50	73	2	7	16	1.15
89019--89077	17	3.6	17	80	17	63	71	1	5	22	1.15
89038--89071	16	2.2	16	89	5	52	70	0	5	23	1.09
89121--89210	30	3.1	28	82	17	89	73	2	4	20	1.11
90129--90153	13	1.9	13	100	0	50	76	8	0	16	1.02
90960--91158	51	3.9	50	67	12	145	26	17	19	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92360--92413	27	2.0	27	85	0	72	48	14	12	24	1.79
92750--92789	21	1.9	21	89	0	62	0	25	0	75	0.81
92758--92801	3	14.7	3	81	9	54	0	27	0	72	0.85
94921--94957	4	9.5	4	85	14	51	21	0	0	78	0.75
96721--96750	10	3.1	10	95	4	53	73	6	0	20	1.05
96995--97043	17	2.8	17	79	17	55	71	4	8	16	1.26
97017--97053	17	2.2	17	90	0	56	72	5	2	18	1.15
97036--97069	16	2.2	16	89	5	52	70	2	5	20	1.21
97121--97199	35	2.2	37	82	13	94	73	5	6	15	1.21
97119--97199	37	2.2	37	80	8	96	74	4	6	14	1.19
97156--97207	23	2.3	23	83	6	61	75	5	7	11	1.19
99821--99851	2	15.5	2	100	0	62	48	0	0	51	1.00
100370--100434	31	2.1	32	91	2	105	26	7	9	56	1.57
100298--100472	91	1.9	90	83	3	226	26	8	11	53	1.65
101212--101270	19	3.1	19	78	9	57	33	3	1	61	1.23
101487--101517	14	2.2	14	94	0	53	45	16	3	35	1.63
103625--104013	194	2.0	193	94	1	690	31	16	16	35	1.91
109735--109780	23	2.0	23	95	0	83	45	8	4	41	1.55
112783--112809	6	4.5	6	100	0	54	29	0	0	70	0.88
113838--113869	6	5.3	6	100	0	64	46	53	0	0	1.00
114675--114750	36	2.1	38	90	5	120	32	2	9	55	1.46
115358--115407	24	2.1	24	81	7	57	28	4	10	58	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119948--119996	20	2.6	18	78	12	53	32	4	6	57	1.42
120427--120506	14	5.7	14	74	11	65	48	28	0	22	1.51
120426--120472	22	2.1	22	88	0	67	51	29	0	19	1.47
120526--120561	17	2.1	17	89	0	54	52	27	0	19	1.46
122849--122882	15	2.3	15	90	10	52	29	26	2	41	1.70
123432--123481	26	2.0	25	88	4	73	20	24	6	50	1.70
124049--124101	27	2.0	27	88	0	79	13	26	33	26	1.93
124042--124113	27	2.7	27	82	0	72	13	31	31	22	1.93
124167--124214	18	2.8	17	82	14	55	31	2	0	66	1.03
125281--125324	22	2.0	22	82	8	54	31	4	4	59	1.38
125322--125346	6	4.2	6	100	0	50	16	0	16	68	1.22
125990--126066	26	2.8	26	76	7	73	58	7	1	32	1.35
128658--128709	25	2.0	26	88	3	79	25	25	3	46	1.70
129146--129195	2	25.0	2	100	0	100	50	0	0	50	1.00
129440--129479	15	2.5	16	88	8	55	30	0	0	70	0.88
129439--129504	27	2.4	27	78	9	71	34	0	1	63	1.04
129846--129902	27	2.1	28	83	3	71	22	28	26	22	1.99
133813--133949	7	19.6	7	67	13	68	45	29	0	24	1.54
133834--133905	34	2.1	34	87	10	103	47	26	0	26	1.53
133932--133967	17	2.1	17	89	0	54	52	27	0	19	1.46
133948--133998	15	3.5	15	73	13	52	49	27	0	23	1.51
133930--134056	54	2.4	53	84	10	161	46	26	0	25	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136918--136969	26	2.0	26	88	3	79	19	25	3	51	1.63
137654--137700	17	2.8	17	81	12	62	29	0	0	70	0.88
137653--137717	26	2.5	25	80	12	69	36	0	0	63	0.95
137688--137728	20	2.1	19	90	4	64	46	0	0	53	1.00
140107--140136	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!