genome.fa.s11779.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011779.1 Kokia drynarioides strain JFW-HI SEQ_126774, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  390585

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2650--2716	4	16.5	4	78	9	73	1	31	0	67	1.00
2650--2716	17	4.1	16	77	9	73	1	31	0	67	1.00
6145--6182	7	5.7	7	96	3	62	89	0	10	0	0.49
12010--12039	6	5.0	6	100	0	60	66	16	16	0	1.25
19915--20001	22	3.9	22	76	11	79	43	22	21	11	1.85
51337--51798	111	4.1	111	86	3	611	23	26	21	28	1.99
58117--58143	6	4.5	6	100	0	54	0	85	0	14	0.61
80936--80980	19	2.3	19	80	3	54	48	2	4	44	1.35
83992--84033	16	2.6	16	88	3	57	0	26	4	69	1.08
86890--86990	23	4.3	23	78	9	98	10	24	21	42	1.85
86911--87018	48	2.3	46	79	12	112	12	23	21	43	1.85
88224--88292	31	2.2	31	79	5	77	39	0	1	59	1.06
92460--92493	2	17.0	2	93	0	59	50	2	47	0	1.16
100883--100933	24	2.1	24	85	0	66	23	7	11	56	1.61
100897--100943	24	2.0	24	82	0	58	25	8	14	51	1.71
102869--102915	24	2.0	24	91	0	76	27	8	8	55	1.59
102873--102927	24	2.3	24	80	0	65	27	12	9	50	1.70
121151--121182	13	2.5	13	94	0	55	40	3	12	43	1.58
125034--125062	2	14.5	2	100	0	58	48	0	0	51	1.00
129543--129636	47	2.0	47	97	2	181	18	22	6	53	1.67
130377--130597	60	3.7	60	92	2	354	27	16	40	15	1.89
133984--134033	19	2.8	18	88	11	61	50	0	4	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133996--134033	19	2.0	19	100	0	76	52	0	5	42	1.24
135071--135106	15	2.2	18	85	14	51	44	5	0	50	1.25
151353--151379	5	5.4	5	100	0	54	18	59	0	22	1.38
159013--159251	122	2.0	122	90	3	383	41	17	12	28	1.86
159363--159425	32	2.0	32	100	0	126	25	23	19	31	1.98
186382--186451	32	2.3	30	88	9	106	31	2	11	54	1.51
186396--186485	29	3.1	29	81	12	96	34	2	10	53	1.47
187447--187505	27	2.1	28	82	14	70	44	5	5	45	1.47
189202--189239	20	2.0	20	84	5	51	7	18	2	71	1.23
200729--200764	16	2.1	16	90	10	54	55	0	0	44	0.99
200499--201073	292	2.0	291	91	0	925	34	13	12	38	1.83
202048--202077	2	15.0	2	100	0	60	50	0	0	50	1.00
212161--212219	28	2.1	28	87	0	82	16	27	18	37	1.93
214210--214297	46	1.9	46	83	0	113	40	18	9	31	1.81
226251--226323	29	2.4	31	90	4	114	52	1	1	45	1.18
226251--226330	30	2.7	29	83	9	99	50	1	1	47	1.17
227910--228055	67	2.2	67	97	0	274	30	15	13	41	1.84
240616--240670	21	2.6	22	83	8	62	58	0	1	40	1.09
247537--247580	23	2.0	22	90	4	70	59	0	6	34	1.24
261865--261923	27	2.2	27	87	0	82	37	6	16	38	1.76
262269--262315	18	2.5	19	76	16	53	68	2	0	29	1.02
262325--262392	22	3.0	21	71	21	66	51	0	4	44	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262712--262741	10	3.1	10	90	9	53	50	0	0	50	1.00
263462--263521	9	7.1	9	69	27	51	51	0	0	48	1.00
263460--263502	21	2.0	22	90	4	70	48	0	0	51	1.00
263463--263523	30	2.1	29	90	6	97	54	0	0	45	1.00
271357--271430	36	2.1	36	100	0	148	21	0	43	35	1.53
273494--273558	31	2.1	31	100	0	130	27	13	23	35	1.93
275620--275697	38	2.1	38	100	0	156	28	15	17	38	1.91
276776--276928	23	6.6	23	76	9	123	44	20	21	13	1.85
276776--276925	69	2.1	68	83	11	180	44	20	22	13	1.85
276866--276949	23	3.6	22	75	15	71	40	22	23	13	1.89
276825--276949	46	2.7	46	78	5	117	41	21	23	13	1.88
279000--279533	267	2.0	267	91	1	865	29	20	23	26	1.99
281719--281769	15	3.4	15	75	0	57	66	3	1	27	1.20
281734--281782	22	2.2	21	79	10	53	65	4	2	28	1.22
281711--281782	30	2.4	30	90	2	119	65	5	1	27	1.23
286525--286597	29	2.4	30	82	8	78	31	6	4	57	1.44
286524--286586	28	2.2	30	81	13	80	30	6	3	60	1.37
286917--286947	4	7.8	4	100	0	62	25	22	0	51	1.48
307699--307748	21	2.4	22	80	10	59	40	6	2	52	1.38
315037--315098	24	2.5	23	76	21	63	50	9	0	40	1.35
315643--315682	20	2.0	20	85	4	55	80	12	2	5	0.98
315690--315757	33	2.2	30	84	12	84	73	19	0	7	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315712--315758	10	4.5	10	86	10	60	76	19	0	4	0.95
321680--321743	33	2.0	33	84	3	85	59	12	7	20	1.58
324231--324261	12	2.6	12	94	0	53	58	16	25	0	1.38
324629--324673	18	2.6	17	82	6	63	37	11	2	48	1.51
324736--324805	32	2.1	35	89	7	110	28	0	2	68	1.04
340242--340269	5	5.6	5	100	0	56	0	17	0	82	0.68
348532--348579	24	2.0	24	84	12	62	25	6	2	66	1.26
354127--354179	18	2.9	18	75	10	63	33	15	16	33	1.90
355638--355700	26	2.3	28	81	13	78	58	3	0	38	1.14
356578--356704	23	5.4	23	82	5	139	44	21	22	12	1.85
365597--365646	21	2.4	21	80	6	57	30	24	10	36	1.88
366368--366561	52	3.7	52	90	1	291	31	22	15	30	1.95
368108--368145	20	1.9	20	88	0	58	28	34	10	26	1.90
368366--368423	20	2.9	20	79	5	64	32	29	12	25	1.92
371252--371298	24	1.9	24	83	12	60	34	8	8	48	1.64
373286--373399	57	2.0	57	100	0	228	21	19	21	38	1.93
376599--376636	7	5.4	7	96	0	67	15	36	0	47	1.46
387225--387262	16	2.4	16	86	8	51	84	2	5	7	0.86
387397--387499	51	2.0	51	88	0	152	54	10	2	32	1.50
389936--389974	20	2.0	20	89	0	60	46	2	2	48	1.29

Tables:   1

The End!