Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011782.1 Kokia drynarioides strain JFW-HI SEQ_126777, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 289247
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 40 characters in sequence are not A, C, G, or T
Found at i:607 original size:24 final size:26
Alignment explanation
Indices: 580--627 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
570 AGAGAAATGT
580 AAATG-TGATATATGA-A-ATTATGGG
1 AAATGATGA-ATATGAGAGATTATGGG
604 AAATGATGAATATGAGAGATTATG
1 AAATGATGAATATGAGAGATTATG
628 CCCATATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 11 0.52
25 4 0.19
26 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (26 bp):
AAATGATGAATATGAGAGATTATGGG
Found at i:716 original size:23 final size:23
Alignment explanation
Indices: 690--785 Score: 140
Period size: 23 Copynumber: 4.2 Consensus size: 23
680 ACACTAGCGC
690 GCTCTCTGATTAGCACTGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
*
713 GCTCTCTGTTTAGCACT-TCGTGT
1 GCTCTCTGATTAGCACTGT-GTGT
*
736 GCTCTCTGATTAGCACTGTGTAT
1 GCTCTCTGATTAGCACTGTGTGT
* *
759 GCTCTCTGATTTGCACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
782 GCTC
1 GCTC
786 AGTACTTTGT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
22 1 0.02
23 63 0.97
24 1 0.02
ACGTcount: A:0.11, C:0.24, G:0.23, T:0.42
Consensus pattern (23 bp):
GCTCTCTGATTAGCACTGTGTGT
Found at i:762 original size:46 final size:46
Alignment explanation
Indices: 690--828 Score: 168
Period size: 46 Copynumber: 3.2 Consensus size: 46
680 ACACTAGCGC
* *
690 GCTCTCTGATTAGCACTGTGTGTGCTCTCTGTTTAGCACTTCGTGT
1 GCTCTCTGATTAGCACTGTGTATGCTCTCTGTTTAGCACTTTGTGT
736 GCTCTCTGATTAGCACTGTGTATGCTCTCTGATTT-GCACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTATGCTCTCTG-TTTAGCACTTTGTGT
* **
782 G--CTC--AGTA-CTTTGTGTA--CTCTCTGTTTAGCACTTTGTGT
1 GCTCTCTGATTAGCACTGTGTATGCTCTCTGTTTAGCACTTTGTGT
821 GCTCTCTG
1 GCTCTCTG
829 TTGCCCAGCA
Statistics
Matches: 82, Mismatches: 5, Indels: 15
0.80 0.05 0.15
Matches are distributed among these distances:
38 3 0.04
39 19 0.23
41 10 0.12
42 3 0.04
44 3 0.04
46 41 0.50
47 3 0.04
ACGTcount: A:0.12, C:0.23, G:0.22, T:0.43
Consensus pattern (46 bp):
GCTCTCTGATTAGCACTGTGTATGCTCTCTGTTTAGCACTTTGTGT
Found at i:8422 original size:30 final size:30
Alignment explanation
Indices: 8383--8442 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
8373 TACTAAAGCA
*
8383 CTCCTAAGGGATAGTTTGGGTAAATTAATT
1 CTCCCAAGGGATAGTTTGGGTAAATTAATT
8413 CTCCCAAGGGATAGTTTGGGTAAATTAATT
1 CTCCCAAGGGATAGTTTGGGTAAATTAATT
8443 TCCAAGCTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.35
Consensus pattern (30 bp):
CTCCCAAGGGATAGTTTGGGTAAATTAATT
Found at i:9420 original size:30 final size:30
Alignment explanation
Indices: 9380--9476 Score: 115
Period size: 30 Copynumber: 3.2 Consensus size: 30
9370 TTTGGGGCCC
* **
9380 AAAATATAATTTT-GGAAAAATTGAGAGGTT
1 AAAATGTAATTTTAGGAAAGTTTGAG-GGTT
* *
9410 AAAATGTAATTTTAGGTAAGTTTGAGGGTC
1 AAAATGTAATTTTAGGAAAGTTTGAGGGTT
* *
9440 AAAATGTAATTTTGGGAAGGTTTGAGGGTT
1 AAAATGTAATTTTAGGAAAGTTTGAGGGTT
9470 AAAATGT
1 AAAATGT
9477 GATATCTTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
30 48 0.84
31 9 0.16
ACGTcount: A:0.38, C:0.01, G:0.26, T:0.35
Consensus pattern (30 bp):
AAAATGTAATTTTAGGAAAGTTTGAGGGTT
Found at i:10409 original size:85 final size:85
Alignment explanation
Indices: 10264--10599 Score: 431
Period size: 85 Copynumber: 4.0 Consensus size: 85
10254 CGCTTCAATA
* * * * * * * * *
10264 ATTTGGTCTACTTCTCT-TATCTTATCAGGAAGATGACCGCTTCATTGATTTAATCCACTTCTTT
1 ATTTGGTCTACATCTCTGTATCTCATCAGGAAAATGACCTCTTTATTGCTTTGACCCACTTCTCT
* *
10328 CTATCTCATCAAGAAGACAT
66 GTATCTCATCAAGAAGACAG
* * * * *
10348 ATTTGGTCTACTTCTCTGTATTTCATTAAGAAGATGACCTCTTTATTGCTTTGACCCACTTCTCT
1 ATTTGGTCTACATCTCTGTATCTCATCAGGAAAATGACCTCTTTATTGCTTTGACCCACTTCTCT
*
10413 GTATCTCATTAAGAAGACAG
66 GTATCTCATCAAGAAGACAG
* **
10433 ATTTGGTCTACATCTTTGTATCTCATCAGGAAAATGGTCTCTTTATTGCTTTGACCCACTTCTCT
1 ATTTGGTCTACATCTCTGTATCTCATCAGGAAAATGACCTCTTTATTGCTTTGACCCACTTCTCT
*
10498 GTATCTCATTAAGAAGACAG
66 GTATCTCATCAAGAAGACAG
* ** *
10518 ATTTGGTCTACATCTTTGTATCTCATCAGGAAAATGGTCTCTTTATTGCTTTGACCCACTTTTCT
1 ATTTGGTCTACATCTCTGTATCTCATCAGGAAAATGACCTCTTTATTGCTTTGACCCACTTCTCT
*
10583 ATATCTCATCAAGAAGA
66 GTATCTCATCAAGAAGA
10600 TCGGGTTTGA
Statistics
Matches: 227, Mismatches: 24, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
84 17 0.07
85 210 0.93
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (85 bp):
ATTTGGTCTACATCTCTGTATCTCATCAGGAAAATGACCTCTTTATTGCTTTGACCCACTTCTCT
GTATCTCATCAAGAAGACAG
Found at i:10816 original size:208 final size:209
Alignment explanation
Indices: 10433--11345 Score: 1253
Period size: 208 Copynumber: 4.4 Consensus size: 209
10423 AAGAAGACAG
* * * ** * * ** * * *
10433 ATTTGGTCTACATCTTTGTATCTCATCAGGAAAATGGTCTCTTTATTGCTTTGACCCACTTCTCT
1 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTAATTTAATCTACTTCTCT
* * * * * * * *
10498 GTATCTCATTAAGAAGACAGATTTGGTCTACATCTTTGTATCTCATCAGGAA-AATGGTCTCTTT
66 GTATCTCATCAAGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACTGATCGCTTT
* * *
10562 ATTGCTTTGACCCACTTTTCTATATCTCATCAAGAAGATCGGGTTTGAAGTGTCATTCGTATTGA
131 ATTGCTTTGACCCACTTCTCTATATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGA
10627 ACTTCGCTTCATTA
196 ACTTCGCTTCATTA
* *
10641 ATTTGCTCTACTTCTCTGTATCCCATCAGGAAGATGACCGCTTCATTAATTTAATCTACTTCTCT
1 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTAATTTAATCTACTTCTCT
* * *
10706 GTATCTCATCAAGAAGGCAAATTTGGTCCACTTCTCTGTATCTTATTAGGAAGACT-ATCGCTTT
66 GTATCTCATCAAGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACTGATCGCTTT
*
10770 ATTGCTTTGACCCACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGA
131 ATTGCTTTGACCCACTTCTCTATATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGA
* * *
10835 GCTTCGCTTCACTG
196 ACTTCGCTTCATTA
10849 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTAATTTAATCTACTTCTCT
1 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTAATTTAATCTACTTCTCT
* * *
10914 GTATCTCATCAAGAAGGCGGATTTGGTCCACTTCTTTGTATCTCATTAGGAAGACT-ATCGCTTT
66 GTATCTCATCAAGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACTGATCGCTTT
* * * *
10978 ATTGCTTTGACCCACTTCTTTGTATCTCATTAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGA
131 ATTGCTTTGACCCACTTCTCTATATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGA
* * * *
11043 GCTTCACTTTATTG
196 ACTTCGCTTCATTA
* * *
11057 ATTTGATCTACTTCTCTGTATCTCATCA-GACAGATGACCGCTTCATTGATTTAATCCACTTCTC
1 ATTTGGTCTACTTCTCTGTATCTCATCAGGA-AGATGACCGCTTCATTAATTTAATCTACTTCTC
* * *
11121 TATATCTCATCAAGAAGGCGGATTTGGTCCACTTTTCTGTATCTCATCAGGAAGA-TGATCGCTT
65 TGTATCTCATCAAGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACTGATCGCTT
* * * * *
11185 TATTGCTTTGACCCATTTCTCTATATTTCATCAGGAAGATGAGGTTTGAAGTCTCATTCGTATTA
130 TATTGCTTTGACCCACTTCTCTATATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTG
*
11250 AACTTCGCTTCAATA
195 AACTTCGCTTCATTA
* *
11265 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGTTTCATTGATTTAAGTC-ACTTCTC
1 ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTAATTTAA-TCTACTTCTC
11329 TGTATCTCATCAAGAAG
65 TGTATCTCATCAAGAAG
11346 ATGACTGTTT
Statistics
Matches: 634, Mismatches: 66, Indels: 10
0.89 0.09 0.01
Matches are distributed among these distances:
207 3 0.00
208 625 0.99
209 6 0.01
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (209 bp):
ATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTAATTTAATCTACTTCTCT
GTATCTCATCAAGAAGGCAGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGACTGATCGCTTT
ATTGCTTTGACCCACTTCTCTATATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTCGTATTGA
ACTTCGCTTCATTA
Found at i:10995 original size:85 final size:85
Alignment explanation
Indices: 10848--11007 Score: 205
Period size: 85 Copynumber: 1.9 Consensus size: 85
10838 TCGCTTCACT
* * *
10848 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTAATTTAATCTACTTCTC
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTAATTTAACCCACTTCTC
10913 TGTATCTCATCAAGAAGGCG
66 TGTATCTCATCAAGAAGGCG
* * * * ** *
10933 GATTTGGTCCACTTCTTTGTATCTCATTAGGAAGACT-ATCGCTTTATTGCTTTGACCCACTTCT
1 GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGA-TGACCGCTTCATTAATTTAACCCACTTCT
*
10997 TTGTATCTCAT
65 CTGTATCTCAT
11008 TAGGAAGATG
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
85 62 0.98
86 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.40
Consensus pattern (85 bp):
GATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCATTAATTTAACCCACTTCTC
TGTATCTCATCAAGAAGGCG
Found at i:11205 original size:85 final size:85
Alignment explanation
Indices: 11056--11222 Score: 219
Period size: 85 Copynumber: 2.0 Consensus size: 85
11046 TCACTTTATT
* *
11056 GATTTGATCTACTTCTCTGTATCTCATCAGACAGATGACCGCTTCATTGATTTAATCCACTTCTC
1 GATTTGATCCACTTCTCTGTATCTCATCAGACAGATGACCGCTTCATTGATTTAACCCACTTCTC
11121 TATATCTCATCAAGAAGGCG
66 TATATCTCATCAAGAAGGCG
* * * * * * *
11141 GATTTGGTCCACTTTTCTGTATCTCATCAGGA-AGATGATCGCTTTATTGCTTTGACCCATTTCT
1 GATTTGATCCACTTCTCTGTATCTCATCA-GACAGATGACCGCTTCATTGATTTAACCCACTTCT
* *
11205 CTATATTTCATCAGGAAG
65 CTATATCTCATCAAGAAG
11223 ATGAGGTTTG
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
85 68 0.97
86 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (85 bp):
GATTTGATCCACTTCTCTGTATCTCATCAGACAGATGACCGCTTCATTGATTTAACCCACTTCTC
TATATCTCATCAAGAAGGCG
Found at i:11329 original size:48 final size:48
Alignment explanation
Indices: 11274--11396 Score: 167
Period size: 48 Copynumber: 2.6 Consensus size: 48
11264 AATTTGGTCT
**
11274 ACTTCTCTGTATCTCATCAGGAAGATGACCGTTTCATTGA-TTTAAGTC
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGTTTCATT-ACTTTAACCC
* * * *
11322 ACTTCTCTGTATCTCATCAAGAAGATGACTGTTTTATTACTTTGACCC
1 ACTTCTCTGTATCTCATCAGGAAGATGACCGTTTCATTACTTTAACCC
*
11370 ACTTCTCTATATCTCATCAGGAAGATG
1 ACTTCTCTGTATCTCATCAGGAAGATG
11397 GGGTTTGAAG
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
47 1 0.02
48 65 0.98
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (48 bp):
ACTTCTCTGTATCTCATCAGGAAGATGACCGTTTCATTACTTTAACCC
Found at i:12075 original size:49 final size:48
Alignment explanation
Indices: 12022--12193 Score: 177
Period size: 49 Copynumber: 3.5 Consensus size: 48
12012 TTATCTTTAG
12022 GGTATAAGATTCGCCATTGTAGCTTTAATCTTTCCCTTCACATCGTTAA
1 GGTATAAGATTCGCCATTGTAGCTTTAATCTTTCCCTTCACATC-TTAA
* * ** * * *
12071 GGTATAAGGTTTGCCATTGCGGCTTCAACCTTTCCCATCACATCTCTAA
1 GGTATAAGATTCGCCATTGTAGCTTTAATCTTTCCCTTCACATCT-TAA
* *
12120 GGTATAAGATTCGCTATTGT-GACTTTAATCTCTT-CCTTCACATTCTTAT
1 GGTATAAGATTCGCCATTGTAG-CTTTAATCT-TTCCCTTCACA-TCTTAA
* * *
12169 GGTACAAGATTCGTCGTTGTAGCTT
1 GGTATAAGATTCGCCATTGTAGCTT
12194 CAATATTTTC
Statistics
Matches: 99, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
48 2 0.02
49 91 0.92
50 6 0.06
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (48 bp):
GGTATAAGATTCGCCATTGTAGCTTTAATCTTTCCCTTCACATCTTAA
Found at i:12079 original size:98 final size:97
Alignment explanation
Indices: 11910--12204 Score: 276
Period size: 98 Copynumber: 3.0 Consensus size: 97
11900 CAATCTGCTT
* * * * * *
11910 CTCTTCATCTTCAGGATATAAGAGTT-GCCATT-TCAACTTTGATCTTTCCCTTCATATCTCTAG
1 CTCTTCATCTTTAGGGTATAAGA-TTCGCCATTGT-AGCTTTAATCTTTCCCTTCACATCT-TAA
*
11973 GGTATAAGGTTCGTCGTTGTGGCTTCCATATTTTC
63 GGTATAAGGTTCGTCGTTGTGGCTTCAATATTTTC
*
12008 CTCTTTATCTTTAGGGTATAAGATTCGCCATTGTAGCTTTAATCTTTCCCTTCACATCGTTAAGG
1 CTCTTCATCTTTAGGGTATAAGATTCGCCATTGTAGCTTTAATCTTTCCCTTCACATC-TTAAGG
* * * * ** *
12073 TATAAGGTTTGCCATTGCGGCTTCAACCTTTCC
65 TATAAGGTTCGTCGTTGTGGCTTCAATATTTTC
* * * *
12106 CATC-ACATCTCTAAGGTATAAGATTCGCTATTGT-GACTTTAATCTCTT-CCTTCACATTCTTA
1 C-TCTTCATCTTTAGGGTATAAGATTCGCCATTGTAG-CTTTAATCT-TTCCCTTCACA-TCTTA
* * * *
12168 TGGTACAAGATTCGTCGTTGTAGCTTCAATATTTTC
62 AGGTATAAGGTTCGTCGTTGTGGCTTCAATATTTTC
12204 C
1 C
12205 ATCTCGTCTT
Statistics
Matches: 159, Mismatches: 31, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
97 3 0.02
98 148 0.93
99 8 0.05
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (97 bp):
CTCTTCATCTTTAGGGTATAAGATTCGCCATTGTAGCTTTAATCTTTCCCTTCACATCTTAAGGT
ATAAGGTTCGTCGTTGTGGCTTCAATATTTTC
Found at i:21284 original size:148 final size:148
Alignment explanation
Indices: 20996--21644 Score: 766
Period size: 148 Copynumber: 4.4 Consensus size: 148
20986 AATTAAAACC
* * * *
20996 AAAATCACTACTTTACTTCAAAATTAAAACTTTTATTTCGAAATAATTAAAAAAATTCGAAACTT
1 AAAATCACTACTTTACTTAAAAATTCAAACTTTTATTTCGAAATAGTT-AAAAAA-TCAAAACTT
* * * *
21061 TGTTTAAAAATATAAACTTTTTTCTTTAAAATCACTAAAAAACATATTTTTATTTTTTAAAAATG
64 TATTTAAAAATTTAAAC-TTTTTCTTTAAAATAACTAAAAAACATATTTTTA-TTTTTAAAAATA
21126 TAAA----C-TTATTTTTAATG
127 TAAACTTTCTTTATTTTTAATG
* * *
21143 AAAATCACTATTTTATTTAAAAAATTTAAACTTTTATTTCGAAATAGTT-AAAAATCAAAACTTT
1 AAAATCACTACTTTACTT-AAAAATTCAAACTTTTATTTCGAAATAGTTAAAAAATCAAAACTTT
21207 ATTTAAAAATTTAAACTTTTTCTTTAAAATAACTAAAAAACATATTTTTATTTTTAAAAATATAA
65 ATTTAAAAATTTAAACTTTTTCTTTAAAATAACTAAAAAACATATTTTTATTTTTAAAAATATAA
*
21272 ACTTTCTTTATTTTTTAATA
130 ACTTTCTTTA-TTTTTAATG
* * *
21292 AAAATCAGTACTTTATTTAAAAATTCAAACTTTTATTTCGAAATAGTTAAAAAAATCAAAAATTT
1 AAAATCACTACTTTACTTAAAAATTCAAACTTTTATTTCGAAATAGTT-AAAAAATCAAAACTTT
*
21357 ATTTAAAAATTTAAACTTTTTCTTTAAAATAACTAAAAAACAGATTTTTATTTTTAAAAATATAA
65 ATTTAAAAATTTAAACTTTTTCTTTAAAATAACTAAAAAACATATTTTTATTTTTAAAAATATAA
* * *
21422 ATTTTCTCCT-TTGTTAATG
130 ACTTTCT-TTATTTTTAATG
21441 AAAATCACTACTTT-CTTAAAAA-TCTAAACTTTTATTTCGAAATAGTTAAAAAAAATCAAAACT
1 AAAATCACTACTTTACTTAAAAATTC-AAACTTTTATTTCGAAATAGTT--AAAAAATCAAAACT
* *
21504 TTGTTTAAAAATTTAAAC-TTTTC-------T-A--AAAAAACATATTTTTATTTTTAAAAATCT
63 TTATTTAAAAATTTAAACTTTTTCTTTAAAATAACTAAAAAACATATTTTTATTTTTAAAAATAT
*
21558 AAACTTTCTTTTTTTTTTTAA-G
128 AAACTTTC--TTTATTTTTAATG
* * * * *
21580 AAAATCACTATTTTACTTAAAAA-TCAAAGTTTTATTTCAAAATTGTTTAAAAAAACCAAAACTT
1 AAAATCACTACTTTACTTAAAAATTCAAACTTTTATTTCGAAATAG-TT-AAAAAATCAAAACTT
21644 T
64 T
21645 TCCCAAAATC
Statistics
Matches: 451, Mismatches: 34, Indels: 42
0.86 0.06 0.08
Matches are distributed among these distances:
138 34 0.08
139 48 0.11
140 20 0.04
141 1 0.00
143 15 0.03
144 33 0.07
145 23 0.05
146 5 0.01
147 19 0.04
148 93 0.21
149 75 0.17
150 84 0.19
151 1 0.00
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.43
Consensus pattern (148 bp):
AAAATCACTACTTTACTTAAAAATTCAAACTTTTATTTCGAAATAGTTAAAAAATCAAAACTTTA
TTTAAAAATTTAAACTTTTTCTTTAAAATAACTAAAAAACATATTTTTATTTTTAAAAATATAAA
CTTTCTTTATTTTTAATG
Found at i:21413 original size:51 final size:49
Alignment explanation
Indices: 21153--21426 Score: 175
Period size: 51 Copynumber: 5.5 Consensus size: 49
21143 AAAATCACTA
** ** * * *
21153 TTTTATTTAAAAAATTTAAACTTTTAT-TTCGAAATAGTTAAAAATCAAAA
1 TTTTATTT-AAAAATTTAAACTTTT-TCTTTAAAATAACTAAAAAACAGAT
* *
21203 CTTTATTTAAAAATTTAAACTTTTTCTTTAAAATAACTAAAAAACATAT
1 TTTTATTTAAAAATTTAAACTTTTTCTTTAAAATAACTAAAAAACAGAT
* *** *
21252 TTTTATTTTTAAAAATATAAAC--TTTCTTTATTTTTTAA-TAAAAATCAG-T
1 TTTTA--TTTAAAAATTTAAACTTTTTCTTTA--AAATAACTAAAAAACAGAT
* * ** ** * *
21301 ACTTTATTTAAAAATTCAAACTTTTAT-TTCGAAATAGTTAAAAAAATCAAAA
1 -TTTTATTTAAAAATTTAAACTTTT-TCTTTAAAATAACT-AAAAAA-CAGAT
*
21353 ATTTATTTAAAAATTTAAACTTTTTCTTTAAAATAACTAAAAAACAGAT
1 TTTTATTTAAAAATTTAAACTTTTTCTTTAAAATAACTAAAAAACAGAT
*
21402 TTTTATTTTTAAAAATATAAA-TTTT
1 TTTTA--TTTAAAAATTTAAACTTTT
21427 CTCCTTTGTT
Statistics
Matches: 171, Mismatches: 37, Indels: 32
0.71 0.15 0.13
Matches are distributed among these distances:
48 16 0.09
49 53 0.31
50 39 0.23
51 63 0.37
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.45
Consensus pattern (49 bp):
TTTTATTTAAAAATTTAAACTTTTTCTTTAAAATAACTAAAAAACAGAT
Found at i:21552 original size:138 final size:139
Alignment explanation
Indices: 21391--21644 Score: 361
Period size: 139 Copynumber: 1.8 Consensus size: 139
21381 TAAAATAACT
21391 AAAAAACAGATTTTTATTTTTAAAAATATAAA-TTT-TCTCCTTTGTTAATGAAAATCACTACTT
1 AAAAAACAGATTTTTATTTTTAAAAATATAAACTTTCTCTCCTTTGTTAA-GAAAATCACTACTT
* *
21454 T-CTTAAAAATCTAAACTTTTATTTCGAAATAGTTAAAAAAAATCAAAACTTTGTTTAAAAATTT
65 TACTTAAAAATC-AAACTTTTATTTCAAAATAGTTAAAAAAAACCAAAACTTTGTTTAAAAATTT
21518 AAACTTTTCTA
129 AAACTTTTCTA
* * * ** * *
21529 AAAAAACATATTTTTATTTTTAAAAATCTAAACTTTCTTTTTTTTTTTAAGAAAATCACTATTTT
1 AAAAAACAGATTTTTATTTTTAAAAATATAAACTTTCTCTCCTTTGTTAAGAAAATCACTACTTT
* * *
21594 ACTTAAAAATCAAAGTTTTATTTCAAAATTGTTTAAAAAAACCAAAACTTT
66 ACTTAAAAATCAAACTTTTATTTCAAAATAGTTAAAAAAAACCAAAACTTT
21645 TCCCAAAATC
Statistics
Matches: 101, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
138 30 0.30
139 52 0.51
140 19 0.19
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.43
Consensus pattern (139 bp):
AAAAAACAGATTTTTATTTTTAAAAATATAAACTTTCTCTCCTTTGTTAAGAAAATCACTACTTT
ACTTAAAAATCAAACTTTTATTTCAAAATAGTTAAAAAAAACCAAAACTTTGTTTAAAAATTTAA
ACTTTTCTA
Found at i:22071 original size:3 final size:3
Alignment explanation
Indices: 22059--22109 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
22049 CATGAAACCC
22059 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
22106 TAA T
1 TAA T
22110 GATGATGATG
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:22114 original size:3 final size:3
Alignment explanation
Indices: 22108--22133 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
22098 AATAATAATA
22108 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
22134 AATTTGGGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:22633 original size:42 final size:42
Alignment explanation
Indices: 22585--22896 Score: 444
Period size: 42 Copynumber: 7.4 Consensus size: 42
22575 ACGCCTAAGA
* *
22585 CTCTAAATGCAATGAAAAGTAAATGAGCCTCCACACCTAGGC
1 CTCTAAATGCAATGAAAAGTAAATGGGCCTCCACACCTGGGC
** *
22627 CTCTAAATAAAATGAAAAGTAAATGGACCTCCACACCTGGGCC
1 CTCTAAATGCAATGAAAAGTAAATGGGCCTCCACACCTGGG-C
* *
22670 CTCTAAATACAATGAAAAGTAAATGGGCCTCCACACTTGGGC
1 CTCTAAATGCAATGAAAAGTAAATGGGCCTCCACACCTGGGC
* * * * *
22712 CTCTAAATGCAATGAAAAGAAAATGGACCTCCACGCATGAGC
1 CTCTAAATGCAATGAAAAGTAAATGGGCCTCCACACCTGGGC
* *
22754 CTCTAAATGCAATGAAAAGTAAATAGGCCTCCACACCTTGGC
1 CTCTAAATGCAATGAAAAGTAAATGGGCCTCCACACCTGGGC
* *
22796 TTCTAAATGCAATGAAAAGTAAATGGGACCTCCACACCTGGAC
1 CTCTAAATGCAATGAAAAGTAAATGGG-CCTCCACACCTGGGC
* *
22839 CTCTAAATGCGATGAAAAGTAAATGGGCCTCCACATCTGGGC
1 CTCTAAATGCAATGAAAAGTAAATGGGCCTCCACACCTGGGC
22881 CTCTAAATGCAATGAA
1 CTCTAAATGCAATGAA
22897 TGCTTTCCTT
Statistics
Matches: 238, Mismatches: 30, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
42 161 0.68
43 77 0.32
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.20
Consensus pattern (42 bp):
CTCTAAATGCAATGAAAAGTAAATGGGCCTCCACACCTGGGC
Found at i:22683 original size:85 final size:84
Alignment explanation
Indices: 22585--22896 Score: 446
Period size: 85 Copynumber: 3.7 Consensus size: 84
22575 ACGCCTAAGA
* **
22585 CTCTAAATGCAATGAAAAGTAAATGAGCCTCCACACCTAGGCCTCTAAATAAAATGAAAAGTAAA
1 CTCTAAATGCAATGAAAAGTAAATGAGCCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAAA
22650 TGGACCTCCACACCTGGGCC
66 TGGACCTCCACACCTGGG-C
* * * *
22670 CTCTAAATACAATGAAAAGTAAATGGGCCTCCACACTTGGGCCTCTAAATGCAATGAAAAGAAAA
1 CTCTAAATGCAATGAAAAGTAAATGAGCCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAAA
* * *
22735 TGGACCTCCACGCATGAGC
66 TGGACCTCCACACCTGGGC
* *
22754 CTCTAAATGCAATGAAAAGTAAAT-AGGCCTCCACACCTTGGCTTCTAAATGCAATGAAAAGTAA
1 CTCTAAATGCAATGAAAAGTAAATGA-GCCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAA
*
22818 ATGGGACCTCCACACCTGGAC
65 AT-GGACCTCCACACCTGGGC
* * *
22839 CTCTAAATGCGATGAAAAGTAAATGGGCCTCCACATCTGGGCCTCTAAATGCAATGAA
1 CTCTAAATGCAATGAAAAGTAAATGAGCCTCCACACCTGGGCCTCTAAATGCAATGAA
22897 TGCTTTCCTT
Statistics
Matches: 199, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
84 60 0.30
85 139 0.70
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.20
Consensus pattern (84 bp):
CTCTAAATGCAATGAAAAGTAAATGAGCCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAAA
TGGACCTCCACACCTGGGC
Found at i:22889 original size:127 final size:127
Alignment explanation
Indices: 22585--22896 Score: 448
Period size: 127 Copynumber: 2.5 Consensus size: 127
22575 ACGCCTAAGA
* * **
22585 CTCTAAATGCAATGAAAAGTAAATGAGCCTCCACACCTAGGCCTCTAAATAAAATGAAAAGTAAA
1 CTCTAAATGCAATGAAAAGTAAATGGGCCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAAA
* *
22650 TGGACCTCCACACCTGGGCCCTCTAAATACAATGAAAAGTAAATGGGCCTCCACACTTGGGC
66 TGGACCTCCACACCTGGGCCCTCTAAATACAATGAAAAGTAAATGGGCCTCCACACCTGGAC
* * * * *
22712 CTCTAAATGCAATGAAAAGAAAATGGACCTCCACGCATGAGCCTCTAAATGCAATGAAAAGTAAA
1 CTCTAAATGCAATGAAAAGTAAATGGGCCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAAA
* * *
22777 TAGG-CCTCCACACCTTGG-CTTCTAAATGCAATGAAAAGTAAATGGGACCTCCACACCTGGAC
66 T-GGACCTCCACACCTGGGCCCTCTAAATACAATGAAAAGTAAATGGG-CCTCCACACCTGGAC
* *
22839 CTCTAAATGCGATGAAAAGTAAATGGGCCTCCACATCTGGGCCTCTAAATGCAATGAA
1 CTCTAAATGCAATGAAAAGTAAATGGGCCTCCACACCTGGGCCTCTAAATGCAATGAA
22897 TGCTTTCCTT
Statistics
Matches: 162, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
126 26 0.16
127 134 0.83
128 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.20
Consensus pattern (127 bp):
CTCTAAATGCAATGAAAAGTAAATGGGCCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAAA
TGGACCTCCACACCTGGGCCCTCTAAATACAATGAAAAGTAAATGGGCCTCCACACCTGGAC
Found at i:23309 original size:10 final size:9
Alignment explanation
Indices: 23296--23340 Score: 54
Period size: 10 Copynumber: 4.7 Consensus size: 9
23286 TTGCTCTCTC
23296 TTTCTATTTT
1 TTTCT-TTTT
23306 TTTCTTTTT
1 TTTCTTTTT
23315 TCTTCTTTTT
1 T-TTCTTTTT
*
23325 TTGTATTTTT
1 TT-TCTTTTT
23335 TTTCTT
1 TTTCTT
23341 GATTTAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 9 0.29
10 22 0.71
ACGTcount: A:0.04, C:0.11, G:0.02, T:0.82
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:30283 original size:20 final size:20
Alignment explanation
Indices: 30251--30289 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
30241 TAAATAAAAA
30251 AAATCCTCTTTTTCTTTTTAT
1 AAATCCTCTTTTT-TTTTTAT
30272 AAATCC-CTTTTTTTTTTA
1 AAATCCTCTTTTTTTTTTA
30290 AAAAAAACCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 6 0.33
21 6 0.33
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.62
Consensus pattern (20 bp):
AAATCCTCTTTTTTTTTTAT
Found at i:31706 original size:85 final size:85
Alignment explanation
Indices: 31562--31717 Score: 197
Period size: 85 Copynumber: 1.8 Consensus size: 85
31552 TGCTTTATTA
* * *
31562 ATTTGGTCTACTTCTCTGTATCTCATCAAAAAGATGACCGCCTCATTGTTTTAATCCACTACTCT
1 ATTTGGTCTACTTCTCTATATCTCATCAAAAAGATGACCGCCTCATTGCTTTAACCCACTACTCT
31627 GTATCTTATCAAGAAGACGG
66 GTATCTTATCAAGAAGACGG
* ** * * * * *
31647 ATTTGGT-TCACTTCTCTATATCTCATTAGGAAGGTGACCGCTTTATTGCTTTGACCCACTTCTC
1 ATTTGGTCT-ACTTCTCTATATCTCATCAAAAAGATGACCGCCTCATTGCTTTAACCCACTACTC
31711 TGTATCT
65 TGTATCT
31718 CATTAGGAAG
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
84 1 0.02
85 58 0.98
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (85 bp):
ATTTGGTCTACTTCTCTATATCTCATCAAAAAGATGACCGCCTCATTGCTTTAACCCACTACTCT
GTATCTTATCAAGAAGACGG
Found at i:31808 original size:209 final size:209
Alignment explanation
Indices: 31436--32575 Score: 1557
Period size: 209 Copynumber: 5.4 Consensus size: 209
31426 CTGTTTCATT
* * * * * * * *
31436 GATTTGG-TCAACTTCTCTGAATCTCACCAGGAAGATGACTGCTTCATTG-TCTGACTCATTTCT
1 GATTTGGTTC-ACTTCTCTGTATCTCATCAGGAAGGTGACCGCTTTATTGCTTTGACCCACTTCT
* * * * * ** * ** * *
31499 CTTTATCTTATCAGAAAAATGAGATTTTAAAGTTTCACTCACACATTCGA-CTTTGCTTTATTAA
65 CTGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACT--CACATT-GAGCTTCACTTCATTGA
* * * *
31563 TTTGGTCTACTTCTCTGTATCTCATCAAAAAGATGACCGCCTCATTGTTTTAATCCACTACTCTG
127 TTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTA
* *
31628 TATCTTATCAAGAAGACG
192 TATCTCATCAGGAAGACG
* *
31646 GATTTGGTTCACTTCTCTATATCTCATTAGGAAGGTGACCGCTTTATTGCTTTGACCCACTTCTC
1 GATTTGGTTCACTTCTCTGTATCTCATCAGGAAGGTGACCGCTTTATTGCTTTGACCCACTTCTC
* * *
31711 TGTATCTCATTAGGAAGATGAGGGTTTGAAGTTTCACTTACATTGAGCTTCACTTCATTGATTTG
66 TGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATTGATTTG
* * * *
31776 GTCTACTTCTCAGTATCTCATCAGGAAGATGACTGCCTCAATATTTTAATCCACTTCTCTATATC
131 GTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTATATC
31841 TCATCAGGAAGACG
196 TCATCAGGAAGACG
* * *
31855 GATTTGGTTCACTTCTCTGTATCTCATCAGGAAAGTAACCGCTTTATTACTTTGACCCACTTCTC
1 GATTTGGTTCACTTCTCTGTATCTCATCAGGAAGGTGACCGCTTTATTGCTTTGACCCACTTCTC
* * *
31920 TGTATCTCATCAGAAAAATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTGATTTG
66 TGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATTGATTTG
* * *
31985 GTCTACTTCTCAGTATCTCATCAAGAAGATGACCGTCTCATTGTTTTAATCCACTTCTATGTATC
131 GTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTATATC
32050 TCATCAGGAAGACG
196 TCATCAGGAAGACG
*
32064 GATTTGGTTCACTTCTCTTTATCTCATCAGGAAGGTGACCGCTTTATTGCTTTGACCCACTTCTC
1 GATTTGGTTCACTTCTCTGTATCTCATCAGGAAGGTGACCGCTTTATTGCTTTGACCCACTTCTC
* * *
32129 TGTATCTCATCAAGAAGATGGGGGTTTGAAGTTTTACTCACATTGAGCTTTACTTCATTGATTTG
66 TGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATTGATTTG
* * *
32194 GTCTACTTCTCAGTATCTCTTCAAGAAGATGACCGTCTCATTGTTTTAATTCACTTCTCTATATC
131 GTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTATATC
* *
32259 TCATCAAGAAGACA
196 TCATCAGGAAGACG
* * * * * * *
32273 GATTTGGTTCACTTCTTTGTTTCTTACCAGGAAGGTAACCGCTTTATTGCTTTGACTCACTTCTT
1 GATTTGGTTCACTTCTCTGTATCTCATCAGGAAGGTGACCGCTTTATTGCTTTGACCCACTTCTC
* * * *
32338 TGTATCTCATCAAGAAGATGGGGGTTTGAAGCTCCACTCACATTGAGCTTCGCTTCATTGATTTG
66 TGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATTGATTTG
* * * * *
32403 GTCTACTTCTTAGTATCTCATCAGGAAGATGACCACCTCATTATTTTAATCCACTTCTCTATAAC
131 GTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTATATC
*
32468 TCATTAGGAAGACG
196 TCATCAGGAAGACG
* *
32482 GATTTGGTTCACTTCTCTGTATCTCATTAGGAAGGTGACCGCTTTATTGCTCTGACCCACTTCTC
1 GATTTGGTTCACTTCTCTGTATCTCATCAGGAAGGTGACCGCTTTATTGCTTTGACCCACTTCTC
* *
32547 TGTATCTCTTAAGGAAGATGGGGGTTTGA
66 TGTATCTCATCAGGAAGATGGGGGTTTGA
32576 TGTCAAAGCT
Statistics
Matches: 824, Mismatches: 103, Indels: 7
0.88 0.11 0.01
Matches are distributed among these distances:
208 2 0.00
209 739 0.90
210 39 0.05
211 44 0.05
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (209 bp):
GATTTGGTTCACTTCTCTGTATCTCATCAGGAAGGTGACCGCTTTATTGCTTTGACCCACTTCTC
TGTATCTCATCAGGAAGATGGGGGTTTGAAGTTTCACTCACATTGAGCTTCACTTCATTGATTTG
GTCTACTTCTCAGTATCTCATCAAGAAGATGACCGCCTCATTGTTTTAATCCACTTCTCTATATC
TCATCAGGAAGACG
Found at i:32124 original size:85 final size:85
Alignment explanation
Indices: 31979--32146 Score: 214
Period size: 85 Copynumber: 2.0 Consensus size: 85
31969 TCGCTTCATT
* *
31979 GATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGTCTCATTGTTTTAATCCACTTCTA
1 GATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGTCTCATTGCTTTAACCCACTTCTA
*
32044 TGTATCTCATCAGGAAGACG
66 TGTATCTCATCAAGAAGACG
** * * * *
32064 GATTTGGT-TCACTTCTCTTTATCTCATCAGGAAGGTGACCG-CTTTATTGCTTTGACCCACTTC
1 GATTTGGTCT-ACTTCTCAGTATCTCATCAAGAAGATGACCGTC-TCATTGCTTTAACCCACTTC
*
32127 TCTGTATCTCATCAAGAAGA
64 TATGTATCTCATCAAGAAGA
32147 TGGGGGTTTG
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
84 2 0.03
85 69 0.97
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (85 bp):
GATTTGGTCTACTTCTCAGTATCTCATCAAGAAGATGACCGTCTCATTGCTTTAACCCACTTCTA
TGTATCTCATCAAGAAGACG
Found at i:32828 original size:49 final size:49
Alignment explanation
Indices: 32771--33157 Score: 255
Period size: 49 Copynumber: 7.8 Consensus size: 49
32761 AGGTACCGTC
* *
32771 TTCGCCGTTGCGACCTCAACCTTTCCCTTCATCTCTTCATGGTACCAAG
1 TTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTCATGGTACCAGG
* * * * * * * *
32820 TTCACCGTTGCGGCGTTAACATTTCCCTCCATATCTTTATGGTA-CTGG
1 TTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTCATGGTACCAGG
* * * * * * * *
32868 ATTCGCTGTTGCGGCCTTAATCTTTCCCATCACATATGCATGGTACCAGG
1 -TTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTCATGGTACCAGG
*
32918 TTCGCCGTTGCAGA-CTCAACCTTTCCCTTCATATCTTCATGGTA-CTGG
1 TTCGCCGTTGC-GACCTCAACCTTTCCCTTCATATCTTCATGGTACCAGG
* * * * * * * * *
32966 ATTCGTCATTGCGGCCTCAATCTTTCCCATCACATCTGCTAAGGTA-TAGGG
1 -TTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTC-ATGGTACCA-GG
** * * * *
33017 TTCATCGTTACGGCCTCAACCTTTCCCTTCATATCTTCATGGTATCGGG
1 TTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTCATGGTACCAGG
* * * *
33066 TTCGTCGTTGC-AGCCTCAACCTTTCCCATCTACAT-TTGCTAAGGTACCAGG
1 TTCGCCGTTGCGA-CCTCAACCTTTCCCTTC-ATATCTT-C-ATGGTACCAGG
* * * ** *
33117 TTTGTCGCTATGACCTTAACCTTTCCCTTCATATCTTCATG
1 TTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTCATG
33158 TTTCCTCAGC
Statistics
Matches: 257, Mismatches: 67, Indels: 28
0.73 0.19 0.08
Matches are distributed among these distances:
48 6 0.02
49 168 0.65
50 48 0.19
51 34 0.13
52 1 0.00
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (49 bp):
TTCGCCGTTGCGACCTCAACCTTTCCCTTCATATCTTCATGGTACCAGG
Found at i:32893 original size:98 final size:98
Alignment explanation
Indices: 32771--33114 Score: 295
Period size: 98 Copynumber: 3.5 Consensus size: 98
32761 AGGTACCGTC
* * * * * * *
32771 TTCGCCGTTGCGACCTCAACCTTTCCCTTCATC-TCTTCATGGTACCAAGTTCACCGTTGC-GGC
1 TTCGCTGTTGCGGCCTCAATCTTTCCCATCA-CATATGCATGGTACCAAGTTCACCGTTGCAGAC
* *
32834 GTTAACATTTCCCTCCATATCTTTATGGTACTGGA
65 -TCAACATTTCCCTCCATATCTTCATGGTACTGGA
* * *
32869 TTCGCTGTTGCGGCCTTAATCTTTCCCATCACATATGCATGGTACCAGGTTCGCCGTTGCAGACT
1 TTCGCTGTTGCGGCCTCAATCTTTCCCATCACATATGCATGGTACCAAGTTCACCGTTGCAGACT
* *
32934 CAACCTTTCCCTTCATATCTTCATGGTACTGGA
66 CAACATTTCCCTCCATATCTTCATGGTACTGGA
* * * * * * * *
32967 TTCG-TCATTGCGGCCTCAATCTTTCCCATCACATCTGCTAAGGTA-TAGGGTTCATCGTTACGG
1 TTCGCT-GTTGCGGCCTCAATCTTTCCCATCACATATGC-ATGGTACCA-AGTTCACCGTTGCAG
* * * *
33030 CCTCAACCTTTCCCTTCATATCTTCATGGTA-TCGGG
63 ACTCAACATTTCCCTCCATATCTTCATGGTACT-GGA
* * * *
33066 TTCG-TCGTTGCAGCCTCAACCTTTCCCATCTACATTTGCTAAGGTACCA
1 TTCGCT-GTTGCGGCCTCAATCTTTCCCATC-ACATATGC-ATGGTACCA
33115 GGTTTGTCGC
Statistics
Matches: 208, Mismatches: 30, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
97 2 0.01
98 114 0.55
99 77 0.37
100 14 0.07
101 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.17, T:0.34
Consensus pattern (98 bp):
TTCGCTGTTGCGGCCTCAATCTTTCCCATCACATATGCATGGTACCAAGTTCACCGTTGCAGACT
CAACATTTCCCTCCATATCTTCATGGTACTGGA
Found at i:33070 original size:99 final size:99
Alignment explanation
Indices: 32841--33157 Score: 381
Period size: 99 Copynumber: 3.2 Consensus size: 99
32831 GGCGTTAACA
* * *
32841 TTTCCCTCCATATCTTTATGGTACTGGATTCG-CTGTTGCGGCCTTAATCTTTCCCATCACATAT
1 TTTCCCTTCATATCTTCATGGTACTGGATTCGTC-GTTGCGGCCTCAATCTTTCCCATCACATAT
* * * * *
32905 GC-ATGGTACCAGGTTCGCCGTTGCAGACTCAACC
65 GCTAAGGTACCAGGTTCGTCGTTACGGCCTCAACC
* *
32939 TTTCCCTTCATATCTTCATGGTACTGGATTCGTCATTGCGGCCTCAATCTTTCCCATCACATCTG
1 TTTCCCTTCATATCTTCATGGTACTGGATTCGTCGTTGCGGCCTCAATCTTTCCCATCACATATG
* *
33004 CTAAGGTA-TAGGGTTCATCGTTACGGCCTCAACC
66 CTAAGGTACCA-GGTTCGTCGTTACGGCCTCAACC
* * * *
33038 TTTCCCTTCATATCTTCATGGTA-TCGGGTTCGTCGTTGCAGCCTCAACCTTTCCCATCTACATT
1 TTTCCCTTCATATCTTCATGGTACT-GGATTCGTCGTTGCGGCCTCAATCTTTCCCATC-ACATA
* * * * *
33102 TGCTAAGGTACCAGGTTTGTCGCTATGACCTTAACC
64 TGCTAAGGTACCAGGTTCGTCGTTACGGCCTCAACC
33138 TTTCCCTTCATATCTTCATG
1 TTTCCCTTCATATCTTCATG
33158 TTTCCTCAGC
Statistics
Matches: 189, Mismatches: 24, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
98 61 0.32
99 76 0.40
100 51 0.27
101 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.17, T:0.36
Consensus pattern (99 bp):
TTTCCCTTCATATCTTCATGGTACTGGATTCGTCGTTGCGGCCTCAATCTTTCCCATCACATATG
CTAAGGTACCAGGTTCGTCGTTACGGCCTCAACC
Found at i:33786 original size:103 final size:103
Alignment explanation
Indices: 33620--33880 Score: 297
Period size: 103 Copynumber: 2.5 Consensus size: 103
33610 TTAAGGTTGT
* * * * * * * *
33620 AAGGTGAATGAAATTGAATTTGATTGAAGGCAAAGCTTGCATAAAAGAAAGAGATCATTGGTTCA
1 AAGGTGAATAAAATTGAATTT-CTTGGAGGCAAAGCTCGCATGAATGAAAAAGATCATCGGTTCA
* * *
33685 TGAACCGTTATCAATATAGAAATGCTTGAACATGATCGC
65 TGAACCGTTATCAATACAAAAACGCTTGAACATGATCGC
*
33724 AAGGTGAATAAAATTGAATTTCTTGGAGGCAAAGCACGCATGAATGAAAAAGATCATCGGTTCAT
1 AAGGTGAATAAAATTGAATTTCTTGGAGGCAAAGCTCGCATGAATGAAAAAGATCATCGGTTCAT
* * * * * *
33789 GAATCGTTGTTAGTGCAAAAACGCTTGAACATGGTCGC
66 GAACCGTTATCAATACAAAAACGCTTGAACATGATCGC
** * * * *
33827 AAGACGAATAAAATTGAATTTCCTAGAGGCAAAGCTCCCGTGAATGAAAAAGAT
1 AAGGTGAATAAAATTGAATTTCTTGGAGGCAAAGCTCGCATGAATGAAAAAGAT
33881 TAAAAATGAC
Statistics
Matches: 132, Mismatches: 25, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
103 112 0.85
104 20 0.15
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.25
Consensus pattern (103 bp):
AAGGTGAATAAAATTGAATTTCTTGGAGGCAAAGCTCGCATGAATGAAAAAGATCATCGGTTCAT
GAACCGTTATCAATACAAAAACGCTTGAACATGATCGC
Found at i:34208 original size:10 final size:10
Alignment explanation
Indices: 34193--34247 Score: 60
Period size: 10 Copynumber: 5.6 Consensus size: 10
34183 TCGACCTCTC
34193 TTTTTCTTTT
1 TTTTTCTTTT
34203 TTTTTCTTTT
1 TTTTTCTTTT
34213 TTTTT-TATTT
1 TTTTTCT-TTT
*
34223 TTTAT-TTTT
1 TTTTTCTTTT
* *
34232 CTTTTCCTTT
1 TTTTTCTTTT
34242 TTTTTC
1 TTTTTC
34248 ATCGAATAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
9 7 0.18
10 31 0.82
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:34243 original size:18 final size:16
Alignment explanation
Indices: 34193--34236 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
34183 TCGACCTCTC
*
34193 TTTTTCTTTTTTTTTCT
1 TTTTTCTTTTTTTTT-A
*
34210 TTTTTTTTTATTTTTTA
1 TTTTTCTTT-TTTTTTA
34227 TTTTTCTTTT
1 TTTTTCTTTT
34237 CCTTTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 1 0.04
17 16 0.70
18 6 0.26
ACGTcount: A:0.05, C:0.07, G:0.00, T:0.89
Consensus pattern (16 bp):
TTTTTCTTTTTTTTTA
Found at i:35124 original size:257 final size:257
Alignment explanation
Indices: 34668--35183 Score: 1014
Period size: 257 Copynumber: 2.0 Consensus size: 257
34658 GTCGTGATAC
34668 TTGTTCTTGAATTCGCTGTACACTTTTGCTATCATACTATTGCTCAAATTCAAGTCATTATTGGA
1 TTGTTCTTGAATTCGCTGTACACTTTTGCTATCATACTATTGCTCAAATTCAAGTCATTATTGGA
34733 TATGATCCTTTTTGGCATTCCATATCGACATATAATCTTTCTTCTTCAAGAATCTGCTTAATCGT
66 TATGATCCTTTTTGGCATTCCATATCGACATATAATCTTTCTTCTTCAAGAATCTGCTTAATCGT
34798 CGACTGTCATAGGAAGTAGTAATCAACAATAATGAGGACGAATTGATACTCATTAAAAAACTCTT
131 CGACTGTCATAGGAAGTAGTAATCAACAATAATGAGGACGAATTGATACTCATTAAAAAACTCTT
34863 TTGCAAAGTTAGCTCAATAATGTCCATGCTTTACATAGAAAGAGGCCACAAAGATAAACTAA
196 TTGCAAAGTTAGCTCAATAATGTCCATGCTTTACATAGAAAGAGGCCACAAAGATAAACTAA
*
34925 TTGTTCTTGAATTCGCTGTACACTTTTGCTATCATACTATTGCTCAAATTCAAGTCATTATTTGA
1 TTGTTCTTGAATTCGCTGTACACTTTTGCTATCATACTATTGCTCAAATTCAAGTCATTATTGGA
34990 TATGATCCTTTTTGGCATTCCATATCGACATATAATCTTTCTTCTTCAAGAATCTGCTTAATCGT
66 TATGATCCTTTTTGGCATTCCATATCGACATATAATCTTTCTTCTTCAAGAATCTGCTTAATCGT
*
35055 CGACTGTCATAGGAAGTAGTAATCAACAATCATGAGGACGAATTGATACTCATTAAAAAACTCTT
131 CGACTGTCATAGGAAGTAGTAATCAACAATAATGAGGACGAATTGATACTCATTAAAAAACTCTT
35120 TTGCAAAGTTAGCTCAATAATGTCCATGCTTTACATAGAAAGAGGCCACAAAGATAAACTAA
196 TTGCAAAGTTAGCTCAATAATGTCCATGCTTTACATAGAAAGAGGCCACAAAGATAAACTAA
35182 TT
1 TT
35184 TTTCAAAATG
Statistics
Matches: 257, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
257 257 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (257 bp):
TTGTTCTTGAATTCGCTGTACACTTTTGCTATCATACTATTGCTCAAATTCAAGTCATTATTGGA
TATGATCCTTTTTGGCATTCCATATCGACATATAATCTTTCTTCTTCAAGAATCTGCTTAATCGT
CGACTGTCATAGGAAGTAGTAATCAACAATAATGAGGACGAATTGATACTCATTAAAAAACTCTT
TTGCAAAGTTAGCTCAATAATGTCCATGCTTTACATAGAAAGAGGCCACAAAGATAAACTAA
Found at i:38676 original size:22 final size:20
Alignment explanation
Indices: 38619--38676 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 20
38609 AAAAGTTATC
38619 TACAAATCAAGTCTTTAAGAT
1 TACAAATCAA-TCTTTAAGAT
38640 TACAAAATCATATCTTCTACAGAT
1 TAC-AAATCA-ATCTT-TA-AGAT
*
38664 TACATATCAATCT
1 TACAAATCAATCT
38677 AAGATATTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
21 3 0.09
22 14 0.44
23 8 0.25
24 7 0.22
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.34
Consensus pattern (20 bp):
TACAAATCAATCTTTAAGAT
Found at i:45972 original size:20 final size:20
Alignment explanation
Indices: 45936--45981 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
45926 TCATTAAGCT
*
45936 TTAATTAATCATTTTTA-ATC
1 TTAATTAATCATATTTATA-C
45956 TTAATTGAATC-TATTTATAC
1 TTAATT-AATCATATTTATAC
45976 TTAATT
1 TTAATT
45982 TAAACTATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.54
Consensus pattern (20 bp):
TTAATTAATCATATTTATAC
Found at i:50958 original size:19 final size:19
Alignment explanation
Indices: 50931--50968 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
50921 CACTATCACC
50931 CACCATAATCAAATTTGTT
1 CACCATAATCAAATTTGTT
*
50950 CACCGTAATCAAATTTGTT
1 CACCATAATCAAATTTGTT
50969 ATTAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (19 bp):
CACCATAATCAAATTTGTT
Found at i:51431 original size:15 final size:15
Alignment explanation
Indices: 51411--51461 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
51401 AGTTTTGAGG
51411 TTTTGAGGAGTAAAA
1 TTTTGAGGAGTAAAA
*
51426 TTTTGAGGAAG-AGAA
1 TTTTGAGG-AGTAAAA
** *
51441 GATAGAGGAGTAAAA
1 TTTTGAGGAGTAAAA
51456 TTTTGA
1 TTTTGA
51462 AGGGAAAATA
Statistics
Matches: 26, Mismatches: 8, Indels: 4
0.68 0.21 0.11
Matches are distributed among these distances:
14 2 0.08
15 22 0.85
16 2 0.08
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (15 bp):
TTTTGAGGAGTAAAA
Found at i:51567 original size:30 final size:30
Alignment explanation
Indices: 51533--51591 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
51523 ATAAAAGAAA
51533 AGTAAAAGTTTTAGAAGAAAAGTGGAAAGG
1 AGTAAAAGTTTTAGAAGAAAAGTGGAAAGG
51563 AGTAAAAGTTTTAGAAGAAAAGTGGAAAG
1 AGTAAAAGTTTTAGAAGAAAAGTGGAAAG
51592 CTTTGAGGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.51, C:0.00, G:0.29, T:0.20
Consensus pattern (30 bp):
AGTAAAAGTTTTAGAAGAAAAGTGGAAAGG
Found at i:51744 original size:29 final size:31
Alignment explanation
Indices: 51697--51757 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
51687 AGGGGTGGGA
* *
51697 TGAGAAGGGAGTAAAAGTTTT-GAGGGAAAG
1 TGAGAAGGGAATAAAAGTTTTGGAGGAAAAG
51727 TGAGAA-GGAATAAAAGTTTTGGAGGAAAAG
1 TGAGAAGGGAATAAAAGTTTTGGAGGAAAAG
51757 T
1 T
51758 AAAAATGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 13 0.46
30 15 0.54
ACGTcount: A:0.43, C:0.00, G:0.36, T:0.21
Consensus pattern (31 bp):
TGAGAAGGGAATAAAAGTTTTGGAGGAAAAG
Found at i:53221 original size:18 final size:18
Alignment explanation
Indices: 53198--53245 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
53188 TTTACAATTC
53198 ATATCACTTTCAATTCCA
1 ATATCACTTTCAATTCCA
53216 ATATCACTTTCAATTCCA
1 ATATCACTTTCAATTCCA
*
53234 ATTTCACTTTCA
1 ATATCACTTTCA
53246 CTTTCAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.42
Consensus pattern (18 bp):
ATATCACTTTCAATTCCA
Found at i:53235 original size:24 final size:24
Alignment explanation
Indices: 53208--53254 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
53198 ATATCACTTT
53208 CAATTCCAATATCACTTTCAATTC
1 CAATTCCAATATCACTTTCAATTC
* * *
53232 CAATTTCACTTTCACTTTCAATT
1 CAATTCCAATATCACTTTCAATT
53255 TTGATCACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.43
Consensus pattern (24 bp):
CAATTCCAATATCACTTTCAATTC
Found at i:53253 original size:18 final size:18
Alignment explanation
Indices: 53201--53255 Score: 83
Period size: 18 Copynumber: 3.1 Consensus size: 18
53191 ACAATTCATA
*
53201 TCACTTTCAATTCCAATA
1 TCACTTTCAATTCCAATT
53219 TCACTTTCAATTCCAATT
1 TCACTTTCAATTCCAATT
* *
53237 TCACTTTCACTTTCAATT
1 TCACTTTCAATTCCAATT
53255 T
1 T
53256 TGATCACAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.45
Consensus pattern (18 bp):
TCACTTTCAATTCCAATT
Found at i:59214 original size:11 final size:11
Alignment explanation
Indices: 59196--59238 Score: 52
Period size: 10 Copynumber: 3.9 Consensus size: 11
59186 ATTATATTGT
59196 TATTTTGGTGC
1 TATTTTGGTGC
*
59207 TGTTTTGGTTGC
1 TATTTTGG-TGC
*
59219 TATTTT-TTGC
1 TATTTTGGTGC
59229 TATTTTGGTG
1 TATTTTGGTG
59239 TTGTGTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
10 9 0.35
11 9 0.35
12 8 0.31
ACGTcount: A:0.07, C:0.07, G:0.26, T:0.60
Consensus pattern (11 bp):
TATTTTGGTGC
Found at i:59899 original size:30 final size:31
Alignment explanation
Indices: 59846--59906 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
59836 AAAAATTTAA
59846 TTGGTACCTAAACTATTCATTTTTT-TCATT
1 TTGGTACCTAAACTATTCATTTTTTGTCATT
* **
59876 TTGGTACCTAAACTTTTTTTTTTTTGTCATT
1 TTGGTACCTAAACTATTCATTTTTTGTCATT
59907 GGTAGAATCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.15, G:0.08, T:0.57
Consensus pattern (31 bp):
TTGGTACCTAAACTATTCATTTTTTGTCATT
Found at i:61418 original size:15 final size:15
Alignment explanation
Indices: 61385--61446 Score: 52
Period size: 15 Copynumber: 3.9 Consensus size: 15
61375 AAATAATTAT
*
61385 ATAAAAAATTTCAATAA
1 ATAAAAAATAT-AA-AA
61402 ATAAAAAATATAAAA
1 ATAAAAAATATAAAA
** *
61417 ATATTAAATATTAAA
1 ATAAAAAATATAAAA
*
61432 ATAATATAATATAAA
1 ATAA-AAAATATAAA
61447 TATTTTTTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
15 17 0.47
16 9 0.25
17 10 0.28
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAAAAAATATAAAA
Found at i:61426 original size:26 final size:26
Alignment explanation
Indices: 61383--61440 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
61373 TAAAATAATT
*
61383 ATATAAAAAATTTCAATAAATAAAA-A
1 ATATAAAAAATTTAAAT-AATAAAATA
*
61409 ATAT-AAAAATATTAAATATTAAAATA
1 ATATAAAAAAT-TTAAATAATAAAATA
61435 ATATAA
1 ATATAA
61441 TATAAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 12 0.44
26 14 0.52
27 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (26 bp):
ATATAAAAAATTTAAATAATAAAATA
Found at i:61442 original size:16 final size:15
Alignment explanation
Indices: 61400--61446 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
61390 AAATTTCAAT
*
61400 AAATAAAAAATATAA
1 AAATAATAAATATAA
* *
61415 AAATATTAAATATTA
1 AAATAATAAATATAA
61430 AAATAATATAATATAA
1 AAATAATA-AATATAA
61446 A
1 A
61447 TATTTTTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATAATAAATATAA
Found at i:65715 original size:15 final size:16
Alignment explanation
Indices: 65687--65716 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
65677 AGTTAAAATG
65687 TAATTTTATTTTTTAT
1 TAATTTTATTTTTTAT
65703 TAATTTT-TTTTTTA
1 TAATTTTATTTTTTA
65717 ATTTTAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TAATTTTATTTTTTAT
Found at i:66490 original size:3 final size:3
Alignment explanation
Indices: 66482--66511 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
66472 TCAACTTGAC
66482 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
66512 ATAGGCGAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:71091 original size:2 final size:2
Alignment explanation
Indices: 71084--71126 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
71074 GGTATCAAAT
71084 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
71126 T
1 T
71127 TTATGAGTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:92093 original size:20 final size:21
Alignment explanation
Indices: 92068--92121 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
92058 TCAGTCGCAT
92068 AAGAAAAAAAGAAAT-AGAAA
1 AAGAAAAAAAGAAATGAGAAA
* *
92088 AAGAAAGAAAAG--TTGATAAA
1 AAGAAA-AAAAGAAATGAGAAA
92108 AAGAAAAAAAGAAA
1 AAGAAAAAAAGAAA
92122 GAAAGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
19 6 0.22
20 16 0.59
21 5 0.19
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (21 bp):
AAGAAAAAAAGAAATGAGAAA
Found at i:96964 original size:22 final size:22
Alignment explanation
Indices: 96934--96977 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
96924 AAGCCTTAGA
96934 AGAGCCTAAGTAAGGAAAGACT
1 AGAGCCTAAGTAAGGAAAGACT
*
96956 AGAGGCTAAGTAAGGAAAGACT
1 AGAGCCTAAGTAAGGAAAGACT
96978 GATAGACCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.45, C:0.11, G:0.30, T:0.14
Consensus pattern (22 bp):
AGAGCCTAAGTAAGGAAAGACT
Found at i:100633 original size:3 final size:3
Alignment explanation
Indices: 100625--100708 Score: 141
Period size: 3 Copynumber: 28.0 Consensus size: 3
100615 CTATGACATT
*
100625 GAA GAA GAA GAA GAA GAA GAA GAA AAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* *
100673 GAA AAA GAA GAA GAA GAA GAA GAA GAA GAA AAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
100709 AGGGATGACC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:102861 original size:49 final size:48
Alignment explanation
Indices: 102804--103278 Score: 412
Period size: 49 Copynumber: 9.7 Consensus size: 48
102794 GACATTAATA
* *
102804 GAAAGATTGAAGCCGCAACGGTGAATCTTATACCTTAGAGATGTGTTAG
1 GAAAGATTGAAGCCGCAACGGTGAATCTTGTACCTTAGAGATGTG-AAG
* ** * * *
102853 GAAAGATTGAAGCTGCAACAATGAATCTTGTGCCCTAGAGATATGGAAG
1 GAAAGATTGAAGCCGCAACGGTGAATCTTGTACCTTAGAGATGT-GAAG
* * * * *
102902 GAAAGGTTGAAGCCGCAACGATGAACCTTGTACCTTAGAGATGGGATGG
1 GAAAGATTGAAGCCGCAACGGTGAATCTTGTACCTTAGAGATGTGA-AG
*** * * * *
102951 GAAAGATTGAAGCTATAACGGCGAATCTTGTACCCTAGAGATATGGAGG
1 GAAAGATTGAAGCCGCAACGGTGAATCTTGTACCTTAGAGATGT-GAAG
* ** * * ** ** *
103000 GAAAGCTTGAAGTTGTAATGACGAGCCTTGTACCTTAGAGATGTGATGG
1 GAAAGATTGAAGCCGCAACGGTGAATCTTGTACCTTAGAGATGTGA-AG
* * * *
103049 GAAAGATTGAAGCCACAACGATGAATCTTGTACCCTAGAGATATGAAAG
1 GAAAGATTGAAGCCGCAACGGTGAATCTTGTACCTTAGAGATGTG-AAG
* * * * *
103098 GAAAGGTTGAAGTCGCAATGGCGAA-CGTTATACCTTAGAGATGTGAAGG
1 GAAAGATTGAAGCCGCAACGGTGAATC-TTGTACCTTAGAGATGTGAA-G
* * * *
103147 GAAAGATTGAAGCCTCAATGGTGAATCTTGTACCCTAGAGATGTGGAGG
1 GAAAGATTGAAGCCGCAACGGTGAATCTTGTACCTTAGAGATGT-GAAG
* * * *
103196 GAAAGGTTGAAGCCGCAATGGTGAACCTTATACCTTAGAGATGTGAAGG
1 GAAAGATTGAAGCCGCAACGGTGAATCTTGTACCTTAGAGATGTGAA-G
* *
103245 GAAAGATTGAAGCCGCAACGGGGAATCTTATACC
1 GAAAGATTGAAGCCGCAACGGTGAATCTTGTACC
103279 CTAAAGCTGA
Statistics
Matches: 342, Mismatches: 74, Indels: 20
0.78 0.17 0.05
Matches are distributed among these distances:
48 9 0.03
49 326 0.95
50 7 0.02
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (48 bp):
GAAAGATTGAAGCCGCAACGGTGAATCTTGTACCTTAGAGATGTGAAG
Found at i:102977 original size:98 final size:98
Alignment explanation
Indices: 102804--103281 Score: 580
Period size: 98 Copynumber: 4.9 Consensus size: 98
102794 GACATTAATA
* * * * * *
102804 GAAAGATTGAAGCCGCAACGGTGAATCTTATACCTTAGAGATGTGTTAGGAAAGATTGAAGCTGC
1 GAAAGGTTGAAGCCGCAATGGTGAACCTTATACCTTAGAGATGTGATGGGAAAGATTGAAGCTAC
* *
102869 AACAATGAATCTTGTGCCCTAGAGATATGGAAG
66 AACGATGAATCTTGTACCCTAGAGATATGGAAG
* * * * *
102902 GAAAGGTTGAAGCCGCAACGATGAACCTTGTACCTTAGAGATGGGATGGGAAAGATTGAAGCTAT
1 GAAAGGTTGAAGCCGCAATGGTGAACCTTATACCTTAGAGATGTGATGGGAAAGATTGAAGCTAC
** *
102967 AACGGCGAATCTTGTACCCTAGAGATATGGAGG
66 AACGATGAATCTTGTACCCTAGAGATATGGAAG
* ** * ** * * *
103000 GAAAGCTTGAAGTTGTAATGACGAGCCTTGTACCTTAGAGATGTGATGGGAAAGATTGAAGCCAC
1 GAAAGGTTGAAGCCGCAATGGTGAACCTTATACCTTAGAGATGTGATGGGAAAGATTGAAGCTAC
*
103065 AACGATGAATCTTGTACCCTAGAGATATGAAAG
66 AACGATGAATCTTGTACCCTAGAGATATGGAAG
* * * *
103098 GAAAGGTTGAAGTCGCAATGGCGAACGTTATACCTTAGAGATGTGAAGGGAAAGATTGAAGCCT-
1 GAAAGGTTGAAGCCGCAATGGTGAACCTTATACCTTAGAGATGTGATGGGAAAGATTGAAG-CTA
* * * *
103162 CAATGGTGAATCTTGTACCCTAGAGATGTGGAGG
65 CAACGATGAATCTTGTACCCTAGAGATATGGAAG
* **
103196 GAAAGGTTGAAGCCGCAATGGTGAACCTTATACCTTAGAGATGTGAAGGGAAAGATTGAAGCCGC
1 GAAAGGTTGAAGCCGCAATGGTGAACCTTATACCTTAGAGATGTGATGGGAAAGATTGAAGCTAC
** *
103261 AACGGGGAATCTTATACCCTA
66 AACGATGAATCTTGTACCCTA
103282 AAGCTGAAGA
Statistics
Matches: 329, Mismatches: 49, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
97 1 0.00
98 327 0.99
99 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (98 bp):
GAAAGGTTGAAGCCGCAATGGTGAACCTTATACCTTAGAGATGTGATGGGAAAGATTGAAGCTAC
AACGATGAATCTTGTACCCTAGAGATATGGAAG
Found at i:103303 original size:147 final size:146
Alignment explanation
Indices: 102804--103326 Score: 497
Period size: 147 Copynumber: 3.6 Consensus size: 146
102794 GACATTAATA
* * * *
102804 GAAAGATTGAAGCCGCAACGGTGAATCTTATACCTTAGAGATG-TGTTAGGAAAGATTGAAGCTG
1 GAAAGATTGAAGCCGCAACGGCGAATCTTATACCCTAAAGATGAAG--AGGAAAGATTGAAGCTG
** * * *
102868 CAACAATGAATCTTGTGCCCTAGAGATATGGAAGGAAAGGTTGAAGCCGCAACGATGAACCTTGT
64 CAATGATGAATCTTGTACCCTAGAGATGTGGAGGGAAAGGTTGAAGCCGCAACGATGAACCTTGT
* *
102933 ACCTTAGAGATGGGATGG
129 ACCTTAGAGATGTGAAGG
*** * * * * *
102951 GAAAGATTGAAGCTATAACGGCGAATCTTGTACCCTAGAGAT-ATGGAGGGAAAGCTTGAAGTTG
1 GAAAGATTGAAGCCGCAACGGCGAATCTTATACCCTAAAGATGA-AGA-GGAAAGATTGAAGCTG
* * ** * * * *
103015 TAATGACGAGCCTTGTACCTTAGAGATGT-GATGGGAAAGATTGAAGCCACAACGATGAATCTTG
64 CAATGATGAATCTTGTACCCTAGAGATGTGGA-GGGAAAGGTTGAAGCCGCAACGATGAACCTTG
* * *
103079 TACCCTAGAGATATGAAAG
128 TACCTTAGAGATGTGAAGG
* * * * *
103098 GAAAGGTTGAAGTCGCAATGGCGAA-CGTTATACCTTAGAGATGTGAAG-GGAAAGATTGAAGCC
1 GAAAGATTGAAGCCGCAACGGCGAATC-TTATACCCTAAAGA--TGAAGAGGAAAGATTGAAG-C
* * *
103161 T-CAATGGTGAATCTTGTACCCTAGAGATGTGGAGGGAAAGGTTGAAGCCGCAATGGTGAACCTT
62 TGCAATGATGAATCTTGTACCCTAGAGATGTGGAGGGAAAGGTTGAAGCCGCAACGATGAACCTT
*
103225 ATACCTTAGAGATGTGAAGG
127 GTACCTTAGAGATGTGAAGG
* *
103245 GAAAGATTGAAGCCGCAACGGGGAATCTTATACCCTAAAGCTGAAGAGGAGTAA-ATTGAAGCTG
1 GAAAGATTGAAGCCGCAACGGCGAATCTTATACCCTAAAGATGAAGAGGA--AAGATTGAAGCTG
*
103309 C-ATGGA-GAATCTTATACC
64 CAAT-GATGAATCTTGTACC
103327 TCAAAGTGGC
Statistics
Matches: 298, Mismatches: 62, Indels: 33
0.76 0.16 0.08
Matches are distributed among these distances:
145 5 0.02
146 22 0.07
147 261 0.88
148 7 0.02
149 2 0.01
150 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (146 bp):
GAAAGATTGAAGCCGCAACGGCGAATCTTATACCCTAAAGATGAAGAGGAAAGATTGAAGCTGCA
ATGATGAATCTTGTACCCTAGAGATGTGGAGGGAAAGGTTGAAGCCGCAACGATGAACCTTGTAC
CTTAGAGATGTGAAGG
Found at i:103643 original size:23 final size:23
Alignment explanation
Indices: 103596--103643 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
103586 CACGACAAAA
*
103596 AATAAAAATTCCAAACAATACCC
1 AATAAAAATTCCAAACAAAACCC
*
103619 AATAAAAATTCCAAACAAAATCC
1 AATAAAAATTCCAAACAAAACCC
103642 AA
1 AA
103644 AGAAATAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (23 bp):
AATAAAAATTCCAAACAAAACCC
Found at i:107563 original size:70 final size:70
Alignment explanation
Indices: 107448--107660 Score: 327
Period size: 70 Copynumber: 3.0 Consensus size: 70
107438 TGTTTAGGAG
* * **
107448 CAGTGGGGTTTTATATATCTAAGTTAATTGTTAACTTACAAATAATTTTGAAAGGGAACAATGGT
1 CAGTGGGGTTTTAGATATCAAAGTTAATTGTTAACTTACTGATAATTTTGAAAGGGAACAATGGT
*
107513 TGTTT
66 TGTTC
* * *
107518 CAGTGTGGTTTTAGATATCCAAGTTAATTGTTAACTTACTGATAATTTTGAAAGGGAACAATAGT
1 CAGTGGGGTTTTAGATATCAAAGTTAATTGTTAACTTACTGATAATTTTGAAAGGGAACAATGGT
107583 TGTTC
66 TGTTC
* * *
107588 CAGTGGGGTTTTAGATATCAAATTTAATTGTTAAGTTATTGATAATTTTGAAAGGGAACAATGGT
1 CAGTGGGGTTTTAGATATCAAAGTTAATTGTTAACTTACTGATAATTTTGAAAGGGAACAATGGT
107653 TGTTC
66 TGTTC
107658 CAG
1 CAG
107661 CAAGAAAAAT
Statistics
Matches: 130, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
70 130 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (70 bp):
CAGTGGGGTTTTAGATATCAAAGTTAATTGTTAACTTACTGATAATTTTGAAAGGGAACAATGGT
TGTTC
Found at i:119377 original size:18 final size:17
Alignment explanation
Indices: 119354--119392 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
119344 AAGTAAAGTT
119354 TTTTATTTAAATTATTTA
1 TTTTATTTAAATT-TTTA
**
119372 TTTTATTTTTATTTTTA
1 TTTTATTTAAATTTTTA
119389 TTTT
1 TTTT
119393 TCAAAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTATTTAAATTTTTA
Found at i:119458 original size:19 final size:20
Alignment explanation
Indices: 119411--119458 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 20
119401 TTGATAAATC
119411 TTAA-TATTA-AATTATAAA
1 TTAATTATTATAATTATAAA
*
119429 TTAAATT-TTATAATT-TATA
1 TT-AATTATTATAATTATAAA
119448 TTAATTATTAT
1 TTAATTATTAT
119459 CAAGAGTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 6 0.24
19 14 0.56
20 5 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTAATTATTATAATTATAAA
Found at i:119785 original size:20 final size:20
Alignment explanation
Indices: 119760--119829 Score: 140
Period size: 20 Copynumber: 3.5 Consensus size: 20
119750 AGCCTATAAG
119760 TGCTCGACGCCACTCGATGT
1 TGCTCGACGCCACTCGATGT
119780 TGCTCGACGCCACTCGATGT
1 TGCTCGACGCCACTCGATGT
119800 TGCTCGACGCCACTCGATGT
1 TGCTCGACGCCACTCGATGT
119820 TGCTCGACGC
1 TGCTCGACGC
119830 TCTTGAAGCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.14, C:0.36, G:0.26, T:0.24
Consensus pattern (20 bp):
TGCTCGACGCCACTCGATGT
Found at i:121216 original size:18 final size:18
Alignment explanation
Indices: 121173--121223 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
121163 GAGATTCTAT
* *
121173 TAAGGAAGAAAAAGATTC
1 TAAGGAAGAAGAAGATCC
121191 TAAGGAAGAAGAAGATCC
1 TAAGGAAGAAGAAGATCC
121209 TGAA-GAAGAAGAAGA
1 T-AAGGAAGAAGAAGA
121224 ATATCCTGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 28 0.93
19 2 0.07
ACGTcount: A:0.55, C:0.06, G:0.27, T:0.12
Consensus pattern (18 bp):
TAAGGAAGAAGAAGATCC
Found at i:124037 original size:12 final size:12
Alignment explanation
Indices: 124020--124044 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
124010 TGTTATTATG
124020 ATGAATGCTATT
1 ATGAATGCTATT
124032 ATGAATGCTATT
1 ATGAATGCTATT
124044 A
1 A
124045 ATTATTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (12 bp):
ATGAATGCTATT
Found at i:133448 original size:30 final size:30
Alignment explanation
Indices: 133412--133476 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
133402 TATGTGGAAG
*
133412 TCAACTTATGGTGGAGCTTGACCCAGAGGA
1 TCAACTTATGGTGGAGCCTGACCCAGAGGA
* *
133442 TCAACTTATGGTGGAGCCTGGCCCGGAGGA
1 TCAACTTATGGTGGAGCCTGACCCAGAGGA
133472 TCAAC
1 TCAAC
133477 CTCCGAACAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.22
Consensus pattern (30 bp):
TCAACTTATGGTGGAGCCTGACCCAGAGGA
Found at i:147156 original size:54 final size:59
Alignment explanation
Indices: 147092--147217 Score: 145
Period size: 60 Copynumber: 2.2 Consensus size: 59
147082 TAGTTTACAC
* *
147092 ATTATTTTCTTATCAC-T-A-A-TATAATCTTTTTTTATT-CAACTACATAACCTATGT
1 ATTATCTTCTTATCACATCATACTATAATCTTATTTTATTGCAACTACATAACCTATGT
** *
147146 ATTATCTTCTTATCACATGCATACTATAATCTTATTTTATTGTGACTCCATAACCTATGT
1 ATTATCTTCTTATCACAT-CATACTATAATCTTATTTTATTGCAACTACATAACCTATGT
*
147206 ATATATCCTCTT
1 AT-TATCTTCTT
147218 TGAAAGAGCT
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
54 15 0.25
55 1 0.02
57 1 0.02
58 1 0.02
59 16 0.27
60 17 0.29
61 8 0.14
ACGTcount: A:0.29, C:0.19, G:0.04, T:0.48
Consensus pattern (59 bp):
ATTATCTTCTTATCACATCATACTATAATCTTATTTTATTGCAACTACATAACCTATGT
Found at i:151939 original size:12 final size:12
Alignment explanation
Indices: 151918--151979 Score: 64
Period size: 12 Copynumber: 5.7 Consensus size: 12
151908 TGATGCCATG
151918 GGAG-AAAGAAA
1 GGAGAAAAGAAA
151929 GGAGAAAAGAAA
1 GGAGAAAAGAAA
151941 -GA-AAAAGAAA
1 GGAGAAAAGAAA
*
151951 --AGGAAAGAAA
1 GGAGAAAAGAAA
*
151961 GGAGAGAAGAAA
1 GGAGAAAAGAAA
151973 GG-GAAAA
1 GGAGAAAA
151980 ATATGTATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
9 1 0.02
10 15 0.35
11 10 0.23
12 17 0.40
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (12 bp):
GGAGAAAAGAAA
Found at i:151941 original size:16 final size:16
Alignment explanation
Indices: 151920--151973 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
151910 ATGCCATGGG
151920 AGAAAGAAAGGAGAAA
1 AGAAAGAAAGGAGAAA
*
151936 AGAAAGAAA-AAGAAA
1 AGAAAGAAAGGAGAAA
*
151951 AGGAAAGAAAGGAGAGA
1 A-GAAAGAAAGGAGAAA
151968 AGAAAG
1 AGAAAG
151974 GGAAAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 6 0.18
16 22 0.67
17 5 0.15
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
AGAAAGAAAGGAGAAA
Found at i:153580 original size:8 final size:8
Alignment explanation
Indices: 153567--153594 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
153557 TATTTATGTC
153567 TAAATTTT
1 TAAATTTT
153575 TAAATTTT
1 TAAATTTT
153583 TAAATTTT
1 TAAATTTT
153591 TAAA
1 TAAA
153595 AATAAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TAAATTTT
Found at i:159089 original size:20 final size:21
Alignment explanation
Indices: 159064--159102 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
159054 CTCCTATGAC
*
159064 CAAGTTGCCTTC-ACTCCAAA
1 CAAGTTGACTTCAACTCCAAA
159084 CAAGTTGACTTCAACTCCA
1 CAAGTTGACTTCAACTCCA
159103 TAACGGACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.31, C:0.33, G:0.10, T:0.26
Consensus pattern (21 bp):
CAAGTTGACTTCAACTCCAAA
Found at i:159529 original size:107 final size:107
Alignment explanation
Indices: 159343--159559 Score: 434
Period size: 107 Copynumber: 2.0 Consensus size: 107
159333 ACCAATATTG
159343 ATTACCTTATTGGATGAATCATTTTTCATGCGCAGAACTCCACCTTCAATCGAACTGTATGTGAA
1 ATTACCTTATTGGATGAATCATTTTTCATGCGCAGAACTCCACCTTCAATCGAACTGTATGTGAA
159408 GAACCATTCTCTGTTAGGATACATGTGGAAAGAACATCTTGA
66 GAACCATTCTCTGTTAGGATACATGTGGAAAGAACATCTTGA
159450 ATTACCTTATTGGATGAATCATTTTTCATGCGCAGAACTCCACCTTCAATCGAACTGTATGTGAA
1 ATTACCTTATTGGATGAATCATTTTTCATGCGCAGAACTCCACCTTCAATCGAACTGTATGTGAA
159515 GAACCATTCTCTGTTAGGATACATGTGGAAAGAACATCTTGA
66 GAACCATTCTCTGTTAGGATACATGTGGAAAGAACATCTTGA
159557 ATT
1 ATT
159560 TAGGATCCAC
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 110 1.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (107 bp):
ATTACCTTATTGGATGAATCATTTTTCATGCGCAGAACTCCACCTTCAATCGAACTGTATGTGAA
GAACCATTCTCTGTTAGGATACATGTGGAAAGAACATCTTGA
Found at i:162712 original size:17 final size:17
Alignment explanation
Indices: 162666--162724 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
162656 TATATATATG
*
162666 AAAATGCAATGACAATG
1 AAAATGCAATGACAATA
* * * *
162683 TAGATTCAGTGACAATA
1 AAAATGCAATGACAATA
*
162700 AAAATGCAATGACATTA
1 AAAATGCAATGACAATA
*
162717 ATAATGCA
1 AAAATGCA
162725 GGGAGAATTA
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.49, C:0.12, G:0.15, T:0.24
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:174023 original size:37 final size:37
Alignment explanation
Indices: 173982--174084 Score: 118
Period size: 37 Copynumber: 2.8 Consensus size: 37
173972 AATGCACCCA
* *
173982 AGACTGTCACTGCATAAA-TTTTCTTCAAACTGCATCT
1 AGACTATCACTGCA-AAAGTATTCTTCAAACTGCATCT
* *
174019 AGACTATCACTGCAAAAGTATTCTTCAAATTGCATCA
1 AGACTATCACTGCAAAAGTATTCTTCAAACTGCATCT
* * *
174056 AGAACTATCATTCCATAAGTATTCTTCAA
1 AG-ACTATCACTGCAAAAGTATTCTTCAA
174085 TTGCACCCAA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
36 3 0.05
37 31 0.54
38 23 0.40
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (37 bp):
AGACTATCACTGCAAAAGTATTCTTCAAACTGCATCT
Found at i:174130 original size:26 final size:26
Alignment explanation
Indices: 174100--174150 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
174090 CCCAAGAATG
*
174100 TCGCTGCATGAACATGTCTAGAATTA
1 TCGCTGCATGAACATGTCCAGAATTA
*
174126 TCGCTGCATGAACGTGTCCAGAATT
1 TCGCTGCATGAACATGTCCAGAATT
174151 GCGCCTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
TCGCTGCATGAACATGTCCAGAATTA
Found at i:178185 original size:38 final size:38
Alignment explanation
Indices: 178138--178246 Score: 164
Period size: 38 Copynumber: 2.9 Consensus size: 38
178128 CAAAATTTAC
* * * *
178138 CCAAGACTATCACTGCGTAAATATTCTTCAATTTGCAT
1 CCAAAACTATCGCTGCATAAGTATTCTTCAATTTGCAT
*
178176 CCAAAACTATCGCTGCATAAGTATTCTTCAAATTGCAT
1 CCAAAACTATCGCTGCATAAGTATTCTTCAATTTGCAT
*
178214 CCAGAACTATCGCTGCATAAGTATTCTTCAATT
1 CCAAAACTATCGCTGCATAAGTATTCTTCAATT
178247 GCACCTAGAA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.33
Consensus pattern (38 bp):
CCAAAACTATCGCTGCATAAGTATTCTTCAATTTGCAT
Found at i:178267 original size:37 final size:37
Alignment explanation
Indices: 178145--178268 Score: 144
Period size: 38 Copynumber: 3.3 Consensus size: 37
178135 TACCCAAGAC
* *
178145 TATCACTGCGTAAATATTCTTCAATTTGCATCCA-AAA
1 TATCACTGCATAAGTATTCTTCAA-TTGCATCCAGAAA
* *
178182 CTATCGCTGCATAAGTATTCTTCAAATTGCATCCAGAAC
1 -TATCACTGCATAAGTATTCTTC-AATTGCATCCAGAAA
*
178221 TATCGCTGCATAAGTATTCTTCAATTGCA-CCTAGAAA
1 TATCACTGCATAAGTATTCTTCAATTGCATCC-AGAAA
*
178258 TGTCACTGCAT
1 TATCACTGCAT
178269 GAACATGTCC
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
36 2 0.03
37 20 0.26
38 50 0.66
39 4 0.05
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.33
Consensus pattern (37 bp):
TATCACTGCATAAGTATTCTTCAATTGCATCCAGAAA
Found at i:183594 original size:39 final size:39
Alignment explanation
Indices: 183535--183612 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
183525 TGCAATGTGA
*
183535 CATGGCATGCAAATACAGAAACAAAATAATAAGCATGTT
1 CATGACATGCAAATACAGAAACAAAATAATAAGCATGTT
183574 CATGACATGCAAATACAGAAACAAAATAATAAGCATGTT
1 CATGACATGCAAATACAGAAACAAAATAATAAGCATGTT
183613 AAACATGCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.50, C:0.15, G:0.14, T:0.21
Consensus pattern (39 bp):
CATGACATGCAAATACAGAAACAAAATAATAAGCATGTT
Found at i:186921 original size:27 final size:30
Alignment explanation
Indices: 186888--186943 Score: 82
Period size: 27 Copynumber: 2.0 Consensus size: 30
186878 TTTCTTAAAT
186888 AATTATAA-AAA-TATAAA-AATTATTAAG
1 AATTATAAGAAATTATAAATAATTATTAAG
*
186915 AATTATAAGAAATTATAAATGATTATTAA
1 AATTATAAGAAATTATAAATAATTATTAA
186944 TTATTTGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 8 0.32
28 3 0.12
29 6 0.24
30 8 0.32
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (30 bp):
AATTATAAGAAATTATAAATAATTATTAAG
Found at i:186940 original size:20 final size:19
Alignment explanation
Indices: 186883--186933 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
186873 AGTGATTTCT
186883 TAAATAATTATAAA-AA-TA
1 TAAA-AATTATAAAGAATTA
*
186901 TAAAAATTATTAAGAATTA
1 TAAAAATTATAAAGAATTA
186920 TAAGAAATTATAAA
1 TAA-AAATTATAAA
186934 TGATTATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 8 0.29
18 6 0.21
19 5 0.18
20 9 0.32
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (19 bp):
TAAAAATTATAAAGAATTA
Found at i:186945 original size:27 final size:27
Alignment explanation
Indices: 186885--186947 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
186875 TGATTTCTTA
*
186885 AATAATTATAAAAATATAAAAATTATT
1 AATAATTATAAAAATATAAAAATGATT
* *
186912 AAGAATTATAAGAAAT-TATAAATGATT
1 AATAATTATAA-AAATATAAAAATGATT
*
186939 ATTAATTAT
1 AATAATTAT
186948 TTGAAAATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 26 0.87
28 4 0.13
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (27 bp):
AATAATTATAAAAATATAAAAATGATT
Found at i:192010 original size:16 final size:16
Alignment explanation
Indices: 191989--192024 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
191979 TTTTCATCTC
191989 ATTTGCACTTAGGTTA
1 ATTTGCACTTAGGTTA
* *
192005 ATTTGCATTTAGTTTA
1 ATTTGCACTTAGGTTA
192021 ATTT
1 ATTT
192025 AACATCCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.25, C:0.08, G:0.14, T:0.53
Consensus pattern (16 bp):
ATTTGCACTTAGGTTA
Found at i:196534 original size:111 final size:110
Alignment explanation
Indices: 196327--196548 Score: 399
Period size: 111 Copynumber: 2.0 Consensus size: 110
196317 GATTTTACTT
* *
196327 GTACCGTCTCATTATCGAAACATGAAAAACATTACGAATCTTTTCAAGTTTGGGGGTAAAGCTAA
1 GTACCATCTCAATATCGAAACATGAAAAACATTACGAATCTTTTCAAGTTTGGGGGTAAAGCTAA
196392 CCTGTAAGCTATAGAACCAAATCTTCTTGTAATCTCATACGACTC
66 CCTGTAAGCTATAGAACCAAATCTTCTTGTAATCTCATACGACTC
*
196437 GTACCATCTCAATATCGAAACATGAAAAACATTATGAATCTTTTCAAGTTTTGGGGGTAAAGCTA
1 GTACCATCTCAATATCGAAACATGAAAAACATTACGAATCTTTTCAAG-TTTGGGGGTAAAGCTA
*
196502 GCCTGTAAGCTATAGAACCAAATCTTCTTGTAATCTCATACGACTC
65 ACCTGTAAGCTATAGAACCAAATCTTCTTGTAATCTCATACGACTC
196548 G
1 G
196549 ATAAACCTTG
Statistics
Matches: 107, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
110 45 0.42
111 62 0.58
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (110 bp):
GTACCATCTCAATATCGAAACATGAAAAACATTACGAATCTTTTCAAGTTTGGGGGTAAAGCTAA
CCTGTAAGCTATAGAACCAAATCTTCTTGTAATCTCATACGACTC
Found at i:198986 original size:80 final size:80
Alignment explanation
Indices: 198851--199006 Score: 190
Period size: 80 Copynumber: 1.9 Consensus size: 80
198841 TAACCATTTT
** * **
198851 CGTCAATTCATGGCACCCGGTGCCTAGTGGATAAACTGTGATAAAAGAGTACAGCTCTAGTTAGG
1 CGTCAATTCATGGCACCCAATGCCTAGTGGATAAACCGCAATAAAAGAGTACAGCTCTAGTT-GG
198916 -TTAACCAACGAAATC
65 ATTAACCAACGAAATC
* * * * *
198931 CGTCAATTCGTTGCACCCAATGTCTAGTGGATAAACCGCAATAAATGAGCT-CAGCTCTGGTTGG
1 CGTCAATTCATGGCACCCAATGCCTAGTGGATAAACCGCAATAAAAGAG-TACAGCTCTAGTTGG
198995 ATTAACCAACGA
65 ATTAACCAACGA
199007 TTTGTGCCTA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
79 2 0.03
80 61 0.95
81 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (80 bp):
CGTCAATTCATGGCACCCAATGCCTAGTGGATAAACCGCAATAAAAGAGTACAGCTCTAGTTGGA
TTAACCAACGAAATC
Found at i:232975 original size:10 final size:8
Alignment explanation
Indices: 232944--232976 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
232934 TCGTCACTCA
232944 CATT-TCT
1 CATTCTCT
232951 CATTCTCT
1 CATTCTCT
232959 CATTCTCT
1 CATTCTCT
*
232967 CATCCTCT
1 CATTCTCT
232975 CA
1 CA
232977 AGTTCTTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
7 4 0.17
8 20 0.83
ACGTcount: A:0.15, C:0.39, G:0.00, T:0.45
Consensus pattern (8 bp):
CATTCTCT
Found at i:236168 original size:56 final size:56
Alignment explanation
Indices: 236092--236218 Score: 218
Period size: 56 Copynumber: 2.3 Consensus size: 56
236082 TATGTGGTCG
*
236092 TATTGGCAAATATGTGGTGGCTTGTCCACGATGTGATTATGTGACTATGTAACCGT
1 TATTGGCAATTATGTGGTGGCTTGTCCACGATGTGATTATGTGACTATGTAACCGT
* **
236148 TATTGGCAATTATGTTGTGGCTTGTCCACGATGTGATTATGTGACTATGTAGTCGT
1 TATTGGCAATTATGTGGTGGCTTGTCCACGATGTGATTATGTGACTATGTAACCGT
236204 TATTGGCAATTATGT
1 TATTGGCAATTATGT
236219 AATGATTTAT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 67 1.00
ACGTcount: A:0.22, C:0.13, G:0.26, T:0.39
Consensus pattern (56 bp):
TATTGGCAATTATGTGGTGGCTTGTCCACGATGTGATTATGTGACTATGTAACCGT
Found at i:236234 original size:56 final size:56
Alignment explanation
Indices: 236092--236238 Score: 177
Period size: 56 Copynumber: 2.6 Consensus size: 56
236082 TATGTGGTCG
* ** * *
236092 TATTGGCAAATATGTGGTGGCTTGTCCACGATGTGATTATGTGACTATGTAACCGT
1 TATTGGCAATTATGTAATGACTTATCCACGATGTGATTATGTGACTATGTAACCGT
** * * **
236148 TATTGGCAATTATGTTGTGGCTTGTCCACGATGTGATTATGTGACTATGTAGTCGT
1 TATTGGCAATTATGTAATGACTTATCCACGATGTGATTATGTGACTATGTAACCGT
* *
236204 TATTGGCAATTATGTAATGATTTATTCACGATGTG
1 TATTGGCAATTATGTAATGACTTATCCACGATGTG
236239 CTATATGACC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 81 1.00
ACGTcount: A:0.23, C:0.12, G:0.25, T:0.39
Consensus pattern (56 bp):
TATTGGCAATTATGTAATGACTTATCCACGATGTGATTATGTGACTATGTAACCGT
Found at i:238652 original size:20 final size:21
Alignment explanation
Indices: 238627--238665 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
238617 CTAATTAATT
238627 GAAATT-ATATTTTTTTTATA
1 GAAATTGATATTTTTTTTATA
*
238647 GAAATTGATTTTTTTTTTA
1 GAAATTGATATTTTTTTTA
238666 ATATACTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (21 bp):
GAAATTGATATTTTTTTTATA
Found at i:239184 original size:21 final size:21
Alignment explanation
Indices: 239158--239210 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
239148 TGAAACGAGA
*
239158 TGATGACGTGGACTAAAAATT
1 TGATGACATGGACTAAAAATT
* *
239179 TGATGACATGGATTTAAAA-T
1 TGATGACATGGACTAAAAATT
*
239199 TGTTGACATGGA
1 TGATGACATGGA
239211 AGTAAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.32
Consensus pattern (21 bp):
TGATGACATGGACTAAAAATT
Found at i:239218 original size:21 final size:21
Alignment explanation
Indices: 239158--239223 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
239148 TGAAACGAGA
* *
239158 TGATGACGTGGACTAAAAATT
1 TGATGACATGGAGTAAAAATT
* *
239179 TGATGACATGGATTTAAAA-T
1 TGATGACATGGAGTAAAAATT
*
239199 TGTTGACATGGAAGTAAAAAATT
1 TGATGACATGG-AGT-AAAAATT
239222 TG
1 TG
239224 TTATTAATGT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 11 0.31
21 18 0.50
22 4 0.11
23 3 0.08
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (21 bp):
TGATGACATGGAGTAAAAATT
Found at i:239224 original size:23 final size:21
Alignment explanation
Indices: 239172--239225 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 21
239162 GACGTGGACT
* *
239172 AAAAATTTGATGACATGGATT
1 AAAAATTTGTTGACATGGATA
*
239193 TAAAA-TTGTTGACATGGAAGTA
1 AAAAATTTGTTGACATGG-A-TA
239215 AAAAATTTGTT
1 AAAAATTTGTT
239226 ATTAATGTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 11 0.42
21 5 0.19
22 5 0.19
23 5 0.19
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.35
Consensus pattern (21 bp):
AAAAATTTGTTGACATGGATA
Found at i:240345 original size:123 final size:122
Alignment explanation
Indices: 240110--240426 Score: 386
Period size: 123 Copynumber: 2.6 Consensus size: 122
240100 GTTTTCCCAT
* * * * *
240110 AAACATCGCAAAAGGTAA-ATCAATAGTAGCATTTATGGGAAAAACGCCGCAAAAGATAAGAGCA
1 AAACGTCGCAAAAGGTAAGAACATTAGTAGCATTTATGGGAAAAATGCCGCAAAAGGTAA-AGCA
* * * *
240174 TTATCGGCGTTTATGACAAAACACTCAAAAGGTAAGAGCATTAGTGGCGTTTATGAGA
65 TTAGCGGCATTTATGACAAAACACGCAAAAGGTAAGAGCATTAATGGCGTTTATGAGA
* * * * *
240232 AAACGTCGTAAAAGGTAAGAGCATTAGTGGCGTTTATGGG-AAAATGCCACAAAAGGTAATAGCA
1 AAACGTCGCAAAAGGTAAGAACATTAGTAGCATTTATGGGAAAAATGCCGCAAAAGGTAA-AGCA
* * *
240296 TTAGCGGTATTTATGAGAAAACGCCGCAAAAGGTAAGAGCATTAATGGCGTTTATGAGA
65 TTAGCGGCATTTATGACAAAAC-ACGCAAAAGGTAAGAGCATTAATGGCGTTTATGAGA
* * * * * *
240355 AAACGCCGCAAAATGTAAGAACATTAGCAGCATTTATGGGAAAAATGCCGCTAAAGGTTAAGCAA
1 AAACGTCGCAAAAGGTAAGAACATTAGTAGCATTTATGGGAAAAATGCCGCAAAAGGTAAAGCAT
240420 TAGCGGC
66 TAGCGGC
240427 GTTTTTCCAT
Statistics
Matches: 163, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
122 54 0.33
123 93 0.57
124 16 0.10
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (122 bp):
AAACGTCGCAAAAGGTAAGAACATTAGTAGCATTTATGGGAAAAATGCCGCAAAAGGTAAAGCAT
TAGCGGCATTTATGACAAAACACGCAAAAGGTAAGAGCATTAATGGCGTTTATGAGA
Found at i:240391 original size:41 final size:41
Alignment explanation
Indices: 240141--240430 Score: 305
Period size: 41 Copynumber: 7.1 Consensus size: 41
240131 AATAGTAGCA
* * *
240141 TTTATGGGAAAAACGCCGCAAAAGATAAGAGCATTATCGGCG
1 TTTATGAG-AAAACGCCGCAAAAGGTAAGAGCATTAGCGGCG
* * * *
240183 TTTATGACAAAAC-ACTCAAAAGGTAAGAGCATTAGTGGCG
1 TTTATGAGAAAACGCCGCAAAAGGTAAGAGCATTAGCGGCG
* * *
240223 TTTATGAGAAAACGTCGTAAAAGGTAAGAGCATTAGTGGCG
1 TTTATGAGAAAACGCCGCAAAAGGTAAGAGCATTAGCGGCG
* * * * **
240264 TTTATGGGAAAATGCCACAAAAGGTAATAGCATTAGCGGTA
1 TTTATGAGAAAACGCCGCAAAAGGTAAGAGCATTAGCGGCG
**
240305 TTTATGAGAAAACGCCGCAAAAGGTAAGAGCATTAATGGCG
1 TTTATGAGAAAACGCCGCAAAAGGTAAGAGCATTAGCGGCG
* * * *
240346 TTTATGAGAAAACGCCGCAAAATGTAAGAACATTAGCAGCA
1 TTTATGAGAAAACGCCGCAAAAGGTAAGAGCATTAGCGGCG
* * * * *
240387 TTTATGGGAAAAATGCCGCTAAAGGTTA-AGCAATAGCGGCG
1 TTTATGAG-AAAACGCCGCAAAAGGTAAGAGCATTAGCGGCG
240428 TTT
1 TTT
240431 TTCCATAAGC
Statistics
Matches: 203, Mismatches: 43, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
40 34 0.17
41 148 0.73
42 21 0.10
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.22
Consensus pattern (41 bp):
TTTATGAGAAAACGCCGCAAAAGGTAAGAGCATTAGCGGCG
Found at i:242505 original size:41 final size:40
Alignment explanation
Indices: 242443--242588 Score: 148
Period size: 41 Copynumber: 3.5 Consensus size: 40
242433 ACAAAATTAG
* * **
242443 AGGTAAAGCAATAGTGACGTTTATGGGAAAATCGTCGCAAA
1 AGGTAAAGCAATAGCGGCGTTTATGGGAAAA-CACCGCAAA
242484 AGGTAAAGCAATAGCGGCGTTTATGGGAAAACACCGCAAA
1 AGGTAAAGCAATAGCGGCGTTTATGGGAAAACACCGCAAA
* * * * *
242524 AGGTAAAGAGCATTAGCGGCATTTATGAGAAAGAAACCGCTAA
1 AGGT-AA-AGCAATAGCGGCGTTTATGGGAAA-ACACCGCAAA
** *
242567 AGGTATTGCAATAGTGGCGTTT
1 AGGTAAAGCAATAGCGGCGTTT
242589 TCCCATAAAC
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
40 11 0.12
41 43 0.49
42 22 0.25
43 12 0.14
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.21
Consensus pattern (40 bp):
AGGTAAAGCAATAGCGGCGTTTATGGGAAAACACCGCAAA
Found at i:248815 original size:66 final size:66
Alignment explanation
Indices: 248708--248845 Score: 172
Period size: 66 Copynumber: 2.1 Consensus size: 66
248698 GCATATTGCT
* * *
248708 CAACTTAAAGCAGAGGCAGCAGCGAGAGAAGCAGAAGCTCAAAGAAAATATGATAAACTTCATCT
1 CAACTTAAAGCAGAGGCAGCAGCGAGAGAAGCAGAAGCTCAAAGAAAATATGACAAACTGCAACT
248773 A
66 A
* * * * *
248774 CAACTTGAAGCCA-AGGTAGCAGCGAGGGAAGCAG-AGTCTCAAAGAAAGTATGACGAACTGCAA
1 CAACTTAAAG-CAGAGGCAGCAGCGAGAGAAGCAGAAG-CTCAAAGAAAATATGACAAACTGCAA
248837 CTA
64 CTA
248840 CAACTT
1 CAACTT
248846 CAAAATATGA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
65 2 0.03
66 58 0.94
67 2 0.03
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.15
Consensus pattern (66 bp):
CAACTTAAAGCAGAGGCAGCAGCGAGAGAAGCAGAAGCTCAAAGAAAATATGACAAACTGCAACT
A
Found at i:249184 original size:43 final size:43
Alignment explanation
Indices: 249121--249252 Score: 194
Period size: 43 Copynumber: 3.1 Consensus size: 43
249111 AAAGCGCGGT
* *
249121 GTTTGTGGGAAAAGCACCGCTAGAGATCATGTTCTATAGTGGC
1 GTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTATAGTGGC
* **
249164 GTTTGTGGGAAAAGCGCCGCTAAAGACCATGTTCTATAGCAGC
1 GTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTATAGTGGC
* *
249207 ATTTGT-CGAAAAGCGCCGCTAAAGATCATGTTCTATAGTGGC
1 GTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTATAGTGGC
249249 GTTT
1 GTTT
249253 TTCCGCATAA
Statistics
Matches: 78, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 35 0.45
43 43 0.55
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
GTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTATAGTGGC
Found at i:252243 original size:2 final size:2
Alignment explanation
Indices: 252236--252269 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
252226 ATTTTTATTC
252236 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
252270 CACATTAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:253531 original size:18 final size:18
Alignment explanation
Indices: 253508--253547 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
253498 TTTATTAAAA
253508 TAATTATGCATGTCATTG
1 TAATTATGCATGTCATTG
253526 TAATTATGCATGTCATTG
1 TAATTATGCATGTCATTG
253544 TAAT
1 TAAT
253548 GCATGTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (18 bp):
TAATTATGCATGTCATTG
Found at i:276060 original size:44 final size:44
Alignment explanation
Indices: 275997--276085 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
275987 GTTGAGGAAT
*
275997 GACATCTCTTCTTTTGCTCAATTTGATATTGAAACACTTTATGA
1 GACATATCTTCTTTTGCTCAATTTGATATTGAAACACTTTATGA
*
276041 GACATATCTTCTTTTGCTCAATTTGATATTGAAATACTTTATGA
1 GACATATCTTCTTTTGCTCAATTTGATATTGAAACACTTTATGA
276085 G
1 G
276086 GCATGGGAGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (44 bp):
GACATATCTTCTTTTGCTCAATTTGATATTGAAACACTTTATGA
Found at i:279258 original size:22 final size:20
Alignment explanation
Indices: 279221--279281 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
279211 AAAAAAGTCG
279221 AAAAGAAAAATTGAAAAAAAA
1 AAAAG-AAAATTGAAAAAAAA
279242 AAAAGAAAATT-AAGAAAAAA
1 AAAAGAAAATTGAA-AAAAAA
*
279262 AGAGAAGAAAA-AGAAAAAAA
1 A-A-AAGAAAATTGAAAAAAA
279282 TATGTCTGAG
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
19 2 0.06
20 13 0.37
21 11 0.31
22 9 0.26
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (20 bp):
AAAAGAAAATTGAAAAAAAA
Found at i:279259 original size:19 final size:19
Alignment explanation
Indices: 279221--279281 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
279211 AAAAAAGTCG
*
279221 AAAAGAAAAATTGAAAAAAAA
1 AAAAG-AAAATT-AAGAAAAA
279242 AAAAGAAAATTAAGAAAAA
1 AAAAGAAAATTAAGAAAAA
* *
279261 AAGAGAAGAA-AAAGAAAAA
1 AAAAGAA-AATTAAGAAAAA
279280 AA
1 AA
279282 TATGTCTGAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 23 0.64
20 8 0.22
21 5 0.14
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (19 bp):
AAAAGAAAATTAAGAAAAA
Found at i:279949 original size:12 final size:12
Alignment explanation
Indices: 279932--279958 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
279922 CTCATTCTTA
279932 ATGCGTTTTTGG
1 ATGCGTTTTTGG
279944 ATGCGTTTTTGG
1 ATGCGTTTTTGG
279956 ATG
1 ATG
279959 ACTAATCGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.11, C:0.07, G:0.33, T:0.48
Consensus pattern (12 bp):
ATGCGTTTTTGG
Found at i:280299 original size:23 final size:25
Alignment explanation
Indices: 280273--280318 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
280263 CCAATTAGGG
280273 AATTA-TTGTTTAG-ATTTAATTCT
1 AATTATTTGTTTAGAATTTAATTCT
*
280296 AATTATTTTTTTAGAATTTAATT
1 AATTATTTGTTTAGAATTTAATT
280319 TGGATCCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (25 bp):
AATTATTTGTTTAGAATTTAATTCT
Found at i:281381 original size:32 final size:32
Alignment explanation
Indices: 281339--281403 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
281329 CAATTTGCAC
* * *
281339 ATAAACAGTTCCCATACAATCAACTCTCATAT
1 ATAAACAGTTCACAGACAATCAACTCACATAT
*
281371 ATAAATAGTTCACAGACAATCAACTCACATAT
1 ATAAACAGTTCACAGACAATCAACTCACATAT
281403 A
1 A
281404 ATCAATTCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.45, C:0.25, G:0.05, T:0.26
Consensus pattern (32 bp):
ATAAACAGTTCACAGACAATCAACTCACATAT
Found at i:281434 original size:29 final size:29
Alignment explanation
Indices: 281395--281555 Score: 205
Period size: 29 Copynumber: 5.6 Consensus size: 29
281385 GACAATCAAC
* ** *
281395 TCACATATAATCAATTCATATACAATATT
1 TCACATATAATCAGTTCGCATACAATAGT
* *
281424 TCACATATAATTAGTTCGCATATAATAGT
1 TCACATATAATCAGTTCGCATACAATAGT
*
281453 TCACAAATAATCAGTTCGCATACAATAGT
1 TCACATATAATCAGTTCGCATACAATAGT
* *
281482 TCACATATAATCAGTTTGCATACTATAGT
1 TCACATATAATCAGTTCGCATACAATAGT
* **
281511 TTACATATAATCAGTTTACATACAATAGT
1 TCACATATAATCAGTTCGCATACAATAGT
*
281540 TCACAAATAATCAGTT
1 TCACATATAATCAGTT
281556 TAAGCTCACA
Statistics
Matches: 115, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 115 1.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.35
Consensus pattern (29 bp):
TCACATATAATCAGTTCGCATACAATAGT
Found at i:281447 original size:15 final size:15
Alignment explanation
Indices: 281427--281503 Score: 77
Period size: 15 Copynumber: 5.3 Consensus size: 15
281417 CAATATTTCA
281427 CATATAATTAGTTCG
1 CATATAATTAGTTCG
*
281442 CATATAA-TAGTTCA
1 CATATAATTAGTTCG
* *
281456 CAAATAATCAGTTCG
1 CATATAATTAGTTCG
* *
281471 CATACAA-TAGTTCA
1 CATATAATTAGTTCG
* *
281485 CATATAATCAGTTTG
1 CATATAATTAGTTCG
281500 CATA
1 CATA
281504 CTATAGTTTA
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
14 23 0.48
15 25 0.52
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (15 bp):
CATATAATTAGTTCG
Found at i:281557 original size:29 final size:29
Alignment explanation
Indices: 281369--281555 Score: 196
Period size: 29 Copynumber: 6.4 Consensus size: 29
281359 CAACTCTCAT
* **
281369 ATATAAAT-AGTTCACAGACAATCAACTCAC
1 ATAT-AATCAGTTCACATACAAT-AGTTCAC
* * *
281399 ATATAATCAATTCATATACAATATTTCAC
1 ATATAATCAGTTCACATACAATAGTTCAC
* * *
281428 ATATAATTAGTTCGCATATAATAGTTCAC
1 ATATAATCAGTTCACATACAATAGTTCAC
* *
281457 AAATAATCAGTTCGCATACAATAGTTCAC
1 ATATAATCAGTTCACATACAATAGTTCAC
** * *
281486 ATATAATCAGTTTGCATACTATAGTTTAC
1 ATATAATCAGTTCACATACAATAGTTCAC
*
281515 ATATAATCAGTTTACATACAATAGTTCAC
1 ATATAATCAGTTCACATACAATAGTTCAC
*
281544 AAATAATCAGTT
1 ATATAATCAGTT
281556 TAAGCTCACA
Statistics
Matches: 134, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
29 119 0.89
30 15 0.11
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.34
Consensus pattern (29 bp):
ATATAATCAGTTCACATACAATAGTTCAC
Found at i:283560 original size:21 final size:21
Alignment explanation
Indices: 283536--283599 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
283526 GAGTTCACAC
* * *
283536 AACATTTAAAGGAGTTTGTAT
1 AACATATAAAAGAGTTTGCAT
*
283557 AACATATAAAAGAGTTCGCAT
1 AACATATAAAAGAGTTTGCAT
283578 AACATATAAAAGAGTTTGCAT
1 AACATATAAAAGAGTTTGCAT
283599 A
1 A
283600 TGCATGTAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.30
Consensus pattern (21 bp):
AACATATAAAAGAGTTTGCAT
Found at i:287638 original size:12 final size:13
Alignment explanation
Indices: 287612--287651 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 13
287602 GATTTTCTCC
* *
287612 AAAATAAAATTGA
1 AAAAGAAAAATGA
287625 AAAAGAAAAA-GA
1 AAAAGAAAAATGA
287637 AAAAGAAAAATGA
1 AAAAGAAAAATGA
287650 AA
1 AA
287652 TTGACCTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 12 0.50
13 12 0.50
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (13 bp):
AAAAGAAAAATGA
Found at i:288079 original size:17 final size:16
Alignment explanation
Indices: 288057--288126 Score: 77
Period size: 17 Copynumber: 4.1 Consensus size: 16
288047 CAAACTCATT
288057 TTAAATTTATTTTAAGA
1 TTAAATTTATTTTAA-A
*
288074 TTAAATTTGTTTTAAAA
1 TTAAATTTATTTT-AAA
288091 TTTAAATTTATTTTAAA
1 -TTAAATTTATTTTAAA
* *
288108 TTTAATTTAAGTTTAAA
1 TTAAATTT-ATTTTAAA
288125 TT
1 TT
288127 TATTTTCAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
16 7 0.15
17 25 0.54
18 14 0.30
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (16 bp):
TTAAATTTATTTTAAA
Found at i:288097 original size:18 final size:18
Alignment explanation
Indices: 288056--288116 Score: 83
Period size: 17 Copynumber: 3.6 Consensus size: 18
288046 CCAAACTCAT
*
288056 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTTTAAAA
*
288074 -TTAAATTTGTTTTAAAA
1 TTTAAATTTATTTTAAAA
288091 TTTAAATTTATTTT-AAA
1 TTTAAATTTATTTTAAAA
288108 TTT-AATTTA
1 TTTAAATTTA
288117 AGTTTAAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
16 6 0.15
17 21 0.54
18 12 0.31
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTAAATTTATTTTAAAA
Found at i:288099 original size:6 final size:6
Alignment explanation
Indices: 288088--288142 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
288078 ATTTGTTTTA
* * *
288088 AAATTT AAATTT -ATTTT AAATTT -AATTT AAGTTT AAATTT -ATTTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
288133 CAAATTT AAA
1 -AAATTT AAA
288143 ATAAATAAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
5 13 0.33
6 22 0.56
7 4 0.10
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (6 bp):
AAATTT
Found at i:288105 original size:11 final size:11
Alignment explanation
Indices: 288089--288128 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
288079 TTTGTTTTAA
288089 AATTTAAATTT
1 AATTTAAATTT
*
288100 ATTTTAAATTT
1 AATTTAAATTT
*
288111 AATTTAAGTTT
1 AATTTAAATTT
288122 AAATTTA
1 -AATTTA
288129 TTTTCAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
11 19 0.76
12 6 0.24
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (11 bp):
AATTTAAATTT
Found at i:288106 original size:29 final size:28
Alignment explanation
Indices: 288074--288141 Score: 91
Period size: 29 Copynumber: 2.4 Consensus size: 28
288064 TATTTTAAGA
**
288074 TTAAATTTGTTTTAAAATTTAAATTTATT
1 TTAAATTTAATTT-AAATTTAAATTTATT
*
288103 TTAAATTTAATTTAAGTTTAAATTTATT
1 TTAAATTTAATTTAAATTTAAATTTATT
288131 TTCAAATTTAA
1 TT-AAATTTAA
288142 AATAAATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 16 0.46
29 19 0.54
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (28 bp):
TTAAATTTAATTTAAATTTAAATTTATT
Found at i:288123 original size:35 final size:34
Alignment explanation
Indices: 288056--288128 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 34
288046 CCAAACTCAT
288056 TTTAAATTTATTTTAAGATTAAATTTGTTTTAAAA
1 TTTAAATTTATTTTAAGATTAAATTTGTTTT-AAA
*
288091 TTTAAATTTATTTTAA-ATTTAATTTAAG-TTTAAA
1 TTTAAATTTATTTTAAGATTAAATTT--GTTTTAAA
288125 TTTA
1 TTTA
288129 TTTTCAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
34 15 0.43
35 19 0.54
36 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (34 bp):
TTTAAATTTATTTTAAGATTAAATTTGTTTTAAA
Found at i:288124 original size:46 final size:46
Alignment explanation
Indices: 288054--288142 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
288044 GCCCAAACTC
* *
288054 ATTTTAAATTTATTTTAAGATTAAATTTGTTTTAAAATTTAAATTT
1 ATTTTAAATTTAATTTAAGATTAAATTTATTTTAAAATTTAAATTT
* *
288100 ATTTTAAATTTAATTTAAGTTTAAATTTATTTTCAAATTTAAA
1 ATTTTAAATTTAATTTAAGATTAAATTTATTTTAAAATTTAAA
288143 ATAAATAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.55
Consensus pattern (46 bp):
ATTTTAAATTTAATTTAAGATTAAATTTATTTTAAAATTTAAATTT
Done.