genome.fa.s11783.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011783.1 Kokia drynarioides strain JFW-HI SEQ_126778, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143117

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11453--11515	28	2.2	28	85	2	81	26	12	28	31	1.93
11531--11815	59	4.8	59	84	7	321	35	2	26	36	1.69
11531--11805	117	2.3	117	85	5	358	35	2	26	35	1.69
11531--11819	30	9.8	29	78	7	271	34	2	27	35	1.69
12174--12330	79	2.0	78	98	0	296	22	16	35	25	1.95
12994--13052	16	3.6	16	70	17	57	38	5	0	55	1.22
13812--13871	29	2.1	29	87	6	86	50	3	0	46	1.18
13811--13900	17	5.2	18	77	6	80	51	5	0	43	1.25
13811--13854	6	7.5	6	82	5	54	47	2	0	50	1.13
14293--14838	207	2.7	199	83	6	716	21	23	19	35	1.96
14666--14990	152	2.1	152	95	0	587	24	21	20	34	1.97
26334--26468	58	2.3	57	78	8	137	37	3	23	35	1.73
26392--26554	28	5.6	29	75	11	127	36	2	24	36	1.69
26378--26554	58	3.0	58	81	6	180	35	2	25	36	1.69
26384--26526	29	5.0	27	76	13	112	34	2	25	37	1.68
26459--26562	31	3.5	28	76	17	104	32	2	25	38	1.71
27660--27718	16	3.6	16	70	17	57	38	5	0	55	1.22
28466--28585	17	6.9	17	81	4	114	50	5	2	41	1.37
28481--28553	6	12.5	6	70	11	53	53	2	1	42	1.23
30878--30960	41	2.0	41	95	0	148	24	30	20	25	1.99
36449--36483	18	1.9	18	88	0	52	25	17	8	48	1.75
44758--44907	61	2.5	61	77	2	158	37	4	14	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64564--64632	29	2.3	31	78	19	83	24	14	10	50	1.73
64955--64996	6	7.2	6	87	12	61	47	2	33	16	1.60
65982--66010	11	2.6	11	100	0	58	82	0	0	17	0.66
66081--66149	36	1.9	36	94	2	122	33	4	13	49	1.61
75356--75380	2	12.5	2	100	0	50	48	0	0	52	1.00
78831--78862	16	2.0	16	100	0	64	37	6	18	37	1.76
85967--86007	12	3.2	13	82	10	57	82	2	2	12	0.86
92935--92986	26	2.0	26	81	3	61	63	0	0	36	0.95
92970--93049	29	2.8	29	75	9	85	62	2	0	35	1.09
94127--94151	11	2.3	11	100	0	50	40	12	8	40	1.72
96341--96379	20	2.0	19	90	5	60	48	0	0	51	1.00
98751--98813	26	2.4	26	69	10	65	38	0	12	49	1.41
101432--101478	24	2.0	24	87	8	69	53	0	2	44	1.12
105186--105226	22	1.9	22	95	5	75	17	7	21	53	1.67
112729--112797	29	2.3	30	77	5	77	46	13	5	34	1.67
112949--112977	15	1.9	15	100	0	58	27	0	3	68	1.05
116936--117022	42	2.1	42	100	0	174	27	4	11	56	1.54
122132--122282	30	5.2	30	79	11	138	33	28	1	36	1.69
122123--122428	59	5.2	58	79	8	252	35	25	2	36	1.69
122123--122489	87	4.2	87	75	11	292	34	26	2	36	1.72
122149--122428	29	9.7	29	76	9	259	35	25	2	37	1.68
122154--122428	59	4.7	58	80	6	281	35	24	2	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122123--122488	29	12.6	30	75	11	225	34	26	3	36	1.72
122670--122719	14	3.4	15	75	10	50	22	10	6	62	1.48
127198--127265	17	4.1	17	88	1	93	39	0	2	57	1.14
127216--127267	6	9.0	6	76	23	58	46	0	1	51	1.12
129001--129320	30	10.8	29	76	8	207	35	27	5	31	1.79
129004--129307	59	5.1	59	74	10	226	36	26	5	31	1.79
129620--129793	90	1.9	90	82	11	214	29	19	14	36	1.91
134559--134614	11	4.9	11	78	6	58	35	1	1	60	1.17
134541--134616	17	4.4	17	86	3	98	39	1	2	56	1.21
134556--134602	23	2.0	23	87	0	67	40	0	2	57	1.11
134712--134753	17	2.4	18	88	4	59	50	35	2	11	1.52
135319--135355	19	2.1	18	85	14	51	51	2	5	40	1.39
135407--135443	17	2.1	18	90	5	58	54	0	0	45	1.00
136552--136730	89	2.0	89	87	2	261	31	32	5	30	1.79
136441--136791	30	11.9	30	72	9	195	32	31	5	30	1.79
136441--136645	59	3.5	59	89	3	315	32	32	6	28	1.82
136501--136805	59	5.2	59	81	5	228	34	30	4	31	1.77
136649--136814	59	2.8	59	88	0	251	35	28	2	33	1.71
140257--140306	24	2.1	24	100	0	100	24	24	16	36	1.94

Tables:   1

The End!