Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011785.1 Kokia drynarioides strain JFW-HI SEQ_126780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 138696
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.31
Found at i:490 original size:86 final size:86
Alignment explanation
Indices: 323--531 Score: 242
Period size: 86 Copynumber: 2.4 Consensus size: 86
313 GGATGTTTCA
* *
323 GAGCATCAAACACCATCCGTAACTTAGGTTGATGGTGGTGCGGGACCATCAGAAAGCACGGGCAC
1 GAGCATCAAACACCATCCGTAACTTAGGTTGATGGTGGTGCGCGACCATCAGAAAGCACGGGAAC
* *
388 CTTGGTACCTTGGATGTACAG
66 CTTGGTACCCTAGATGTACAG
* * * *
409 GAGCATCAAACACCATCCGTAACTT-TGTCTGATGGTGGTGTGCGAGCATCA-AGAAGCATGGGA
1 GAGCATCAAACACCATCCGTAACTTAGGT-TGATGGTGGTGCGCGACCATCAGA-AAGCACGGGA
* * *
472 ACCTTGGTGCCCTAGATGTGCTG
64 ACCTTGGTACCCTAGATGTACAG
* * ** *
495 GAGTATCGAACACCATTAGTAACTTAGGTCGATGGTG
1 GAGCATCAAACACCATCCGTAACTTAGGTTGATGGTG
532 CTACAGAACC
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
85 3 0.03
86 98 0.95
87 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (86 bp):
GAGCATCAAACACCATCCGTAACTTAGGTTGATGGTGGTGCGCGACCATCAGAAAGCACGGGAAC
CTTGGTACCCTAGATGTACAG
Found at i:813 original size:86 final size:86
Alignment explanation
Indices: 690--940 Score: 304
Period size: 86 Copynumber: 2.9 Consensus size: 86
680 AACTTAACCT
* * * * *
690 GATGGTGGTGTGGGACCATCAGGAAGCGTCGATACCTTGGTGCCTTGGTTGTGTGGGAGCATTGG
1 GATGGTGGTGTGGGACCATCGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTGGGAGCATCGG
*
755 ACACTATCAGTAACATAGATC
66 ACACCATCAGTAACATAGATC
* * * * * **
776 GATGGGGGTGTGGGACTATCGGGAAGCATTGGCACCTTGGTGCCTTAGATGTGTGGGAGCATCAA
1 GATGGTGGTGTGGGACCATCGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTGGGAGCATCGG
* * *
841 ACACCATCAGTAACTTAGGTT
66 ACACCATCAGTAACATAGATC
* * * *
862 GATGGTGGTATGGGACCATTGGGAAGCATCGACACCTTGGTACCTTGGATGTGCGGGAGCATCGG
1 GATGGTGGTGTGGGACCATCGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTGGGAGCATCGG
* *
927 ACATCATCGGTAAC
66 ACACCATCAGTAAC
941 TTATGTCATT
Statistics
Matches: 136, Mismatches: 29, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
86 136 1.00
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.25
Consensus pattern (86 bp):
GATGGTGGTGTGGGACCATCGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTGGGAGCATCGG
ACACCATCAGTAACATAGATC
Found at i:963 original size:86 final size:86
Alignment explanation
Indices: 701--968 Score: 198
Period size: 86 Copynumber: 3.1 Consensus size: 86
691 ATGGTGGTGT
* * * * * * * *** *
701 GGGACCATCAGGAAGCGTCGATACCTTGGTGCCTTGGTTGTGTGGGAGCATTGGACACTATCAGT
1 GGGACCATCGGGAAGCATCGACACCTTGGTACCTTAGATGTGCGGGAGCATCAAACACCATCAGT
* * ** **
766 AACATA-GATCGATGGGGGTGT
66 AACTTAGGTTC-ATGGTAGTAC
* * * * *
787 GGGACTATCGGGAAGCATTGGCACCTTGGTGCCTTAGATGTGTGGGAGCATCAAACACCATCAGT
1 GGGACCATCGGGAAGCATCGACACCTTGGTACCTTAGATGTGCGGGAGCATCAAACACCATCAGT
* * *
852 AACTTAGGTTGATGGTGGTAT
66 AACTTAGGTTCATGGTAGTAC
* * ** * *
873 GGGACCATTGGGAAGCATCGACACCTTGGTACCTTGGATGTGCGGGAGCATCGGACATCATCGGT
1 GGGACCATCGGGAAGCATCGACACCTTGGTACCTTAGATGTGCGGGAGCATCAAACACCATCAGT
* * *
938 AACTTATG-TCATTGTTAGTGC
66 AACTTAGGTTCA-TGGTAGTAC
959 GGGACCATCG
1 GGGACCATCG
969 AATACCATCG
Statistics
Matches: 145, Mismatches: 35, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
85 2 0.01
86 141 0.97
87 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (86 bp):
GGGACCATCGGGAAGCATCGACACCTTGGTACCTTAGATGTGCGGGAGCATCAAACACCATCAGT
AACTTAGGTTCATGGTAGTAC
Found at i:1178 original size:86 final size:86
Alignment explanation
Indices: 1035--1244 Score: 217
Period size: 86 Copynumber: 2.4 Consensus size: 86
1025 TTTTAATGCT
* * * * * * *
1035 TTGGATGTGTGGGAGCATCGGACACCAACGGTAACCTAGGCTGGTGATTGTATGGGACCATTGAG
1 TTGGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGGCTGATGATAGTATGGGACCATCGAG
1100 AATAACT-AGCACCTTAGTACC
66 AA-AACTGAGCACCTTAGTACC
* * * *
1121 TTGGATGTGCGGGAGCCTCGGACACCATCGACAACTTATGCTGATGGTAGT-TCGGGACCATCGA
1 TTGGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGGCTGATGATAGTAT-GGGACCATCGA
** * * *
1185 GAAGCCTGGGCACCTTGGTGCC
65 GAAAACTGAGCACCTTAGTACC
* **
1207 TTGGATGTGCGGGAGCGTCAAACACCATCGGCAACTTA
1 TTGGATGTGCGGGAGCATCGGACACCATCGGCAACTTA
1245 AGACAATGGC
Statistics
Matches: 102, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
85 3 0.03
86 99 0.97
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (86 bp):
TTGGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGGCTGATGATAGTATGGGACCATCGAG
AAAACTGAGCACCTTAGTACC
Found at i:1782 original size:43 final size:43
Alignment explanation
Indices: 1663--1826 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 43
1653 AACAAAAACT
* * * * *
1663 ATCGACACTTTGGTGCCTTGGATGTAC-GGTAGCCTCGGACCA-C
1 ATCGGCACCTTGGTGACTTGGATGTGCAGG-AGCATCGGA-CAGC
* * * **
1706 ATCGGTACTTTGGT-ACCTTGGATATGC-GAGAGCATCGGACATT
1 ATCGGCACCTTGGTGA-CTTGGATGTGCAG-GAGCATCGGACAGC
* *
1749 ATCGGCACCTTGGTGACTTGGATGTGTAGGAGCATCGGGCAGC
1 ATCGGCACCTTGGTGACTTGGATGTGCAGGAGCATCGGACAGC
* *
1792 ATCGGCACCTTGGTGACTTGGTTGTGCGGGAGCAT
1 ATCGGCACCTTGGTGACTTGGATGTGCAGGAGCAT
1827 TAGACACCAT
Statistics
Matches: 99, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 2 0.02
43 94 0.95
44 3 0.03
ACGTcount: A:0.19, C:0.22, G:0.32, T:0.27
Consensus pattern (43 bp):
ATCGGCACCTTGGTGACTTGGATGTGCAGGAGCATCGGACAGC
Found at i:2452 original size:122 final size:122
Alignment explanation
Indices: 2294--2517 Score: 308
Period size: 122 Copynumber: 1.8 Consensus size: 122
2284 GGAGCATCGG
** * *
2294 ACACCATCGATAACTTAGGCCAATGGTGGTGTGGGACAATTGGGAAA-CAAGGGCACCTTGTTGC
1 ACACCATCGATAACTTAGGCCAATGGTGGTACGGGACAATT-AGAAAGCAAGGGCACCTTGGTGC
* *
2358 CTTGGATGTGCAGGAGCATCAGATACCATAGGTAACTTTGGATGTTCCAGAGCATTAA
65 CTTGGATGTACAGGAGCATCAAATACCATAGGTAACTTTGGATGTTCCAGAGCATTAA
* * *
2416 ACACCATTCG-TAACTTAGGCCGATGGTGGTACGGGACCATTAGAAAGCACGGGCACCTTGGTGC
1 ACACCA-TCGATAACTTAGGCCAATGGTGGTACGGGACAATTAGAAAGCAAGGGCACCTTGGTGC
* **
2480 CTTGGATGTACGGGAGCATCAAATACCATCTGTAACTT
65 CTTGGATGTACAGGAGCATCAAATACCATAGGTAACTT
2518 GGTCTGATAG
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
121 4 0.05
122 81 0.92
123 3 0.03
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (122 bp):
ACACCATCGATAACTTAGGCCAATGGTGGTACGGGACAATTAGAAAGCAAGGGCACCTTGGTGCC
TTGGATGTACAGGAGCATCAAATACCATAGGTAACTTTGGATGTTCCAGAGCATTAA
Found at i:2719 original size:86 final size:82
Alignment explanation
Indices: 2407--3007 Score: 255
Period size: 86 Copynumber: 7.1 Consensus size: 82
2397 GGATGTTCCA
* * * * * *
2407 GAGCATTAAACACCATTCGTAACTTAGGCCGATGGTGGTACGGGACCATTAGAAAGCACGGGCAC
1 GAGCATCAAATACCA-TCGTAACTTAGGTCGATGGTGGTACGAGACCATCAGGAAGCAC-GGCAC
*
2472 CTTGGTGCCTTGGATGTACGG
64 CTTGGTGCC-TGGATGTGC-G
* * ** * *
2493 GAGCATCAAATACCATCTGTAACTT-GGTCTGATAGTCGTGTGAGAGCATCAAGAAGCATCGGCA
1 GAGCATCAAATACCATC-GTAACTTAGGTC-GATGGTGGTACGAGACCATCAGGAAGCA-CGGCA
*
2557 TCTTGGTGCCCTGGATGTGCTG
63 CCTTGGTG-CCTGGATGTGC-G
* * * * * * **
2579 GAGTATCAAACACCATGAGTAACATAGGTCGATGGTGCTACG-GAACTATTGGGAAGCATCGGCA
1 GAGCATCAAATACCAT-CGTAACTTAGGTCGATGGTGGTACGAG-ACCATCAGGAAGCA-CGGCA
*
2643 CCTTAGTGCCTAGGATGTGCG
63 CCTTGGTGCCT-GGATGTGCG
* * * * * *
2664 AGAGCACCATATACCATCGATAACTTAGGTCTATGGTGGTGCGAGACCATCGGGAAGCACGGGAC
1 -GAGCATCAAATACCATCG-TAACTTAGGTCGATGGTGGTACGAGACCATCAGGAAGCACGGCAC
** * * *
2729 CTTCATG-CTGTA-CT--A
64 CTTGGTGCCTGGATGTGCG
* * * ** * * **
2744 GAGCATCGAACACCATCGTCAACTTA-GCCTGATGGTGGTGTGGGACCATCAGGAAGCGTCGATA
1 GAGCATCAAATACCATCGT-AACTTAGGTC-GATGGTGGTACGAGACCATCAGGAAGC-ACGGCA
* *
2808 CCTTGGTGCCTTGGTTGTGTGG
63 CCTTGGTGCC-TGGATGTG-CG
** * * * * * ** * * * *
2830 GAGCATCGGACACCATCAATAACATAGATCGATGGGGGTGTGGGACTATCGGGAAGCATTGGCAC
1 GAGCATCAAATACCATC-GTAACTTAGGTCGATGGTGGTACGAGACCATCAGGAAGCA-CGGCAC
* * *
2895 CTTGGTACCTTAGATGTGTGG
64 CTTGGTGCC-TGGATGTG-CG
* * * * * ** *
2916 GAGCATTAAACACCATCAATAACTTAGG-CTGATGGTGGTATGGGACCATTGGGAAGCATCGACA
1 GAGCATCAAATACCATC-GTAACTTAGGTC-GATGGTGGTACGAGACCATCAGGAAGCA-CGGCA
*
2980 CCTTGGTGCCTTGGATGTGTGG
63 CCTTGGTGCC-TGGATGTG-CG
3002 GAGCAT
1 GAGCAT
3008 AGGTCATCAT
Statistics
Matches: 397, Mismatches: 94, Indels: 48
0.74 0.17 0.09
Matches are distributed among these distances:
78 3 0.01
79 43 0.11
80 9 0.02
81 1 0.00
82 3 0.01
83 3 0.01
84 2 0.01
85 22 0.06
86 301 0.76
87 10 0.03
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (82 bp):
GAGCATCAAATACCATCGTAACTTAGGTCGATGGTGGTACGAGACCATCAGGAAGCACGGCACCT
TGGTGCCTGGATGTGCG
Found at i:3027 original size:86 final size:86
Alignment explanation
Indices: 2764--3010 Score: 309
Period size: 86 Copynumber: 2.9 Consensus size: 86
2754 CACCATCGTC
* * * * *
2764 AACTTAGCCTGATGGTGGTGTGGGACCATCAGGAAGCGTCGATACCTTGGTGCCTTGGTTGTGTG
1 AACTTAGGCTGATGGTGGTGTGGGACCATCGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTG
*
2829 GGAGCATCGGACACCATCAAT
66 GGAGCATAGGACACCATCAAT
* * * * * * * *
2850 AACATA-GATCGATGGGGGTGTGGGACTATCGGGAAGCATTGGCACCTTGGTACCTTAGATGTGT
1 AACTTAGGCT-GATGGTGGTGTGGGACCATCGGGAAGCATCGACACCTTGGTGCCTTGGATGTGT
*
2914 GGGAGCATTA-AACACCATCAAT
65 GGGAGCA-TAGGACACCATCAAT
* *
2936 AACTTAGGCTGATGGTGGTATGGGACCATTGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTG
1 AACTTAGGCTGATGGTGGTGTGGGACCATCGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTG
3001 GGAGCATAGG
66 GGAGCATAGG
3011 TCATCATTGG
Statistics
Matches: 131, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
85 3 0.02
86 125 0.95
87 3 0.02
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.25
Consensus pattern (86 bp):
AACTTAGGCTGATGGTGGTGTGGGACCATCGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTG
GGAGCATAGGACACCATCAAT
Found at i:3047 original size:86 final size:85
Alignment explanation
Indices: 2764--3052 Score: 301
Period size: 86 Copynumber: 3.4 Consensus size: 85
2754 CACCATCGTC
* * * * *
2764 AACTTAGCCTGATGGTGGTGTGGGACCATCAGGAAGCGTCGATACCTTGGTGCCTTGGTTGTGTG
1 AACTTAGTC-GATGGTGGTGTGGGACCATCGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTG
*
2829 GGAGCATCGGACACCATCAAT
65 GGAGCATAGGACACCATCAAT
* * * * * * *
2850 AACATAGATCGATGGGGGTGTGGGACTATCGGGAAGCATTGGCACCTTGGTACCTTAGATGTGTG
1 AACTTAG-TCGATGGTGGTGTGGGACCATCGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTG
*
2915 GGAGCATTA-AACACCATCAAT
65 GGAGCA-TAGGACACCATCAAT
* * *
2936 AACTTAGGCTGATGGTGGTATGGGACCATTGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTG
1 AACTTAGTC-GATGGTGGTGTGGGACCATCGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTG
* * ***
3001 GGAGCATAGGTCATCATTGGT
65 GGAGCATAGGACACCATCAAT
* * *
3022 AACTTAAGTCGTTGTTGGTGCGGGACCATCG
1 AACTT-AGTCGATGGTGGTGTGGGACCATCG
3053 AATACCATCG
Statistics
Matches: 162, Mismatches: 36, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
85 3 0.02
86 154 0.95
87 5 0.03
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (85 bp):
AACTTAGTCGATGGTGGTGTGGGACCATCGGGAAGCATCGACACCTTGGTGCCTTGGATGTGTGG
GAGCATAGGACACCATCAAT
Found at i:3305 original size:86 final size:85
Alignment explanation
Indices: 3192--3465 Score: 212
Period size: 86 Copynumber: 3.2 Consensus size: 85
3182 AGAATAACTA
* * * ** * **
3192 GCACCTTGGTACCTTGGATGTGTGGGAGCCTCGGACACCATCAACAACTTATGCTGATAG-TAGT
1 GCACCTTGGTGCCTTGGATAT-AGGGAGCCTCAAACACCATCAACAACTTAAGCCAATAGCT-GT
* * *
3256 TCGGGATCATCGAGAAGCCTGG
64 GCGGGACCATCGAGAAGCATGG
* *** *
3278 GCACCTTGGTGCCTTGGATATACGGGAGCGTCAAACACCATCGGTAACTTAAGCCAATGGCTGTG
1 GCACCTTGGTGCCTTGGATATA-GGGAGCCTCAAACACCATCAACAACTTAAGCCAATAGCTGTG
*
3343 CGGGACCATCGAGATGCATGG
65 CGGGACCATCGAGAAGCATGG
* * * ** ** * * * *
3364 GCACCTTGGTGCCTTAGATATTAGGGAGCATCAGACATTATCGTCAACTTAGGTCGAT-GGTGGT
1 GCACCTTGGTGCCTTGGATA-TAGGGAGCCTCAAACACCATCAACAACTTAAGCCAATAGCT-GT
3428 GCGGGACCATC-AGGAAGCATGG
64 GCGGGACCATCGA-GAAGCATGG
*
3450 GCACCTTGGTGACTTG
1 GCACCTTGGTGCCTTG
3466 AAAGTGCGAA
Statistics
Matches: 152, Mismatches: 31, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
85 3 0.02
86 146 0.96
87 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (85 bp):
GCACCTTGGTGCCTTGGATATAGGGAGCCTCAAACACCATCAACAACTTAAGCCAATAGCTGTGC
GGGACCATCGAGAAGCATGG
Found at i:3455 original size:172 final size:172
Alignment explanation
Indices: 3308--3931 Score: 418
Period size: 172 Copynumber: 3.7 Consensus size: 172
3298 TACGGGAGCG
* *
3308 TCAAACACCATCGGTAACTTAAG-CCAATGGCT-GTGCGGGACCATCGAGATGCATGGGCACCTT
1 TCAAACACCATCGGTAACTT-AGTCCAATGG-TGGTGCGGGACCATCGAGAAGCATCGGCACCTT
* * * * *
3371 GGTGCCTTAGATATTAGGGAGCATCAGACATTATC-GTCAACTTAGGTCGATGGTGGTGCGGGAC
64 GGTGCCCTAGATATGAGGGAGCATCAGACACTATCAGT-AACTTAGGTCGATGGAGGTACGGGAC
*
3435 CATCAGGAAGCATGGGCACCTTGGTGACTTGAAAGTGCGAAAACA
128 CATCAGGAAGCATGGGCACCTTGGTGACTTGAAAGTACGAAAACA
* * ** * *
3480 TCGAACACCATCTGTAACTTAGTCTGATGGTGGTGTGGGAGCATCGAGAAGCATCGGCACCTTGG
1 TCAAACACCATCGGTAACTTAGTCCAATGGTGGTGCGGGACCATCGAGAAGCATCGGCACCTTGG
* * * * *
3545 TGCCCTGGATGTGCGGGAGTATCAGACACTATCAGTAACTTAGGTCGATGGAGGTATGGGACCAT
66 TGCCCTAGATATGAGGGAGCATCAGACACTATCAGTAACTTAGGTCGATGGAGGTACGGGACCAT
* * * ** * *
3610 CGGGAAGCACGGGAACCTTCATG-C-T----GTGCGAAAGCA
131 CAGGAAGCATGGGCACCTTGGTGACTTGAAAGTACGAAAACA
* * * * * * *
3646 TCAAACATCATCGGTAACTTAG-CCTGACGGTGTTGCGAGACCATTGAGAAGCATCGGCACCTTT
1 TCAAACACCATCGGTAACTTAGTCC-AATGGTGGTGCGGGACCATCGAGAAGCATCGGCACCTTG
* * * * * * * * * *
3710 GTGTCTTGGTTAT-ACGGGAGCATCGGACTCCATCGGTAACATAAGTCGATGGAGGTGA-GGGAC
65 GTGCCCTAGATATGA-GGGAGCATCAGACACTATCAGTAACTTAGGTCGATGGAGGT-ACGGGAC
* ** * * * * * *
3773 TATC-GGAAAGCATCAGCGCTTTGGT-ACCTTTG-ATGTGC-AGGAGCA
128 CATCAGG-AAGCATGGGCACCTTGGTGA-C-TTGAAAGTACGA-AAACA
** * * * * * * *
3818 TCGGACGCCATCAGCAACTTAGGT-CGATGGTGGTGCGAGACCATCGGGAAGCATCGACACCTTG
1 TCAAACACCATCGGTAACTTA-GTCCAATGGTGGTGCGGGACCATCGAGAAGCATCGGCACCTTG
** * * * * *
3882 GAACCTTAGATGTGCGGGAGCATCAGACACTATCGGTAACTTAGGGCGAT
65 GTGCCCTAGATATGAGGGAGCATCAGACACTATCAGTAACTTAGGTCGAT
3932 TGTGGTGCAG
Statistics
Matches: 352, Mismatches: 82, Indels: 36
0.75 0.17 0.08
Matches are distributed among these distances:
165 3 0.01
166 122 0.35
167 2 0.01
169 1 0.00
170 1 0.00
171 5 0.01
172 214 0.61
173 4 0.01
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (172 bp):
TCAAACACCATCGGTAACTTAGTCCAATGGTGGTGCGGGACCATCGAGAAGCATCGGCACCTTGG
TGCCCTAGATATGAGGGAGCATCAGACACTATCAGTAACTTAGGTCGATGGAGGTACGGGACCAT
CAGGAAGCATGGGCACCTTGGTGACTTGAAAGTACGAAAACA
Found at i:3499 original size:86 final size:85
Alignment explanation
Indices: 3392--3628 Score: 228
Period size: 86 Copynumber: 2.8 Consensus size: 85
3382 TATTAGGGAG
** *
3392 CATCAGACATTATC-GTCAACTTAGGTCGATGGTGGTGCGGGACCATCAGGAAGCATGGGCACCT
1 CATCAGACACCATCAGT-AACTTAGGTCGATGGTGGTGTGGGACCATC-GGAAGCATGGGCACCT
*
3456 TGGTGACTTGAAAGTGCGAAAA
64 TGGTGACCTGAAAGTGCGAAAA
* * *
3478 CATC-GAACACCATCTGTAACTTA-GTCTGATGGTGGTGTGGGAGCATCGAGAAGCATCGGCACC
1 CATCAG-ACACCATCAGTAACTTAGGTC-GATGGTGGTGTGGGACCATCG-GAAGCATGGGCACC
* * * ** *
3541 TTGGTGCCCTGGATGTGCGGGAG
63 TTGGTGACCTGAAAGTGCGAAAA
* * * * * *
3564 TATCAGACACTATCAGTAACTTAGGTCGATGGAGGTATGGGACCATCGGGAAGCACGGGAACCTT
1 CATCAGACACCATCAGTAACTTAGGTCGATGGTGGTGTGGGACCATC-GGAAGCATGGGCACCTT
3629 CATGCTGTGC
Statistics
Matches: 123, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
85 5 0.04
86 111 0.90
87 7 0.06
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (85 bp):
CATCAGACACCATCAGTAACTTAGGTCGATGGTGGTGTGGGACCATCGGAAGCATGGGCACCTTG
GTGACCTGAAAGTGCGAAAA
Found at i:3760 original size:166 final size:166
Alignment explanation
Indices: 3308--3784 Score: 417
Period size: 166 Copynumber: 2.8 Consensus size: 166
3298 TACGGGAGCG
* * * * *
3308 TCAAACACCATCGGTAACTTAAGCC-AATGGCT-GTGCGGGACCATCGAGATGCATGGGCACCTT
1 TCAAACACCATCGGTAACTT-AGCCTGACGG-TGGTGCGAGACCATCGAGAAGCATCGGCACCTT
* * ** * * * *
3371 GGTGCCTTAGATATTA-GGGAGCATCAGACATTATC-GTCAACTTAGGTCGATGGTGGTGCGGGA
64 GGTGCCCTGGATA-TACGGGAGCATCAGACACCATCAGT-AACATAAGTCGATGGAGGTGAGGGA
* * **
3434 CCATCAGG-AAGCATGGGCACCTTGGTGACTTGAAAGTGCGAAAACA
127 CCATC-GGAAAGCACGGGAACCTTCATG-C-T----GTGCGAAAACA
* * * * * * *
3480 TCGAACACCATCTGTAACTTAGTCTGATGGTGGTGTGGGAGCATCGAGAAGCATCGGCACCTTGG
1 TCAAACACCATCGGTAACTTAGCCTGACGGTGGTGCGAGACCATCGAGAAGCATCGGCACCTTGG
* * * * * *
3545 TGCCCTGGATGTGCGGGAGTATCAGACACTATCAGTAACTTAGGTCGATGGAGGT-ATGGGACCA
66 TGCCCTGGATATACGGGAGCATCAGACACCATCAGTAACATAAGTCGATGGAGGTGA-GGGACCA
* *
3609 TCGGGAAGCACGGGAACCTTCATGCTGTGCGAAAGCA
130 TCGGAAAGCACGGGAACCTTCATGCTGTGCGAAAACA
* * * *
3646 TCAAACATCATCGGTAACTTAGCCTGACGGTGTTGCGAGACCATTGAGAAGCATCGGCACCTTTG
1 TCAAACACCATCGGTAACTTAGCCTGACGGTGGTGCGAGACCATCGAGAAGCATCGGCACCTTGG
* * * * * * *
3711 TGTCTTGGTTATACGGGAGCATCGGACTCCATCGGTAACATAAGTCGATGGAGGTGAGGGACTAT
66 TGCCCTGGATATACGGGAGCATCAGACACCATCAGTAACATAAGTCGATGGAGGTGAGGGACCAT
3776 CGGAAAGCA
131 CGGAAAGCA
3785 TCAGCGCTTT
Statistics
Matches: 252, Mismatches: 46, Indels: 20
0.79 0.14 0.06
Matches are distributed among these distances:
166 122 0.48
167 1 0.00
170 1 0.00
171 8 0.03
172 118 0.47
173 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (166 bp):
TCAAACACCATCGGTAACTTAGCCTGACGGTGGTGCGAGACCATCGAGAAGCATCGGCACCTTGG
TGCCCTGGATATACGGGAGCATCAGACACCATCAGTAACATAAGTCGATGGAGGTGAGGGACCAT
CGGAAAGCACGGGAACCTTCATGCTGTGCGAAAACA
Found at i:3923 original size:86 final size:86
Alignment explanation
Indices: 3724--3939 Score: 236
Period size: 86 Copynumber: 2.5 Consensus size: 86
3714 CTTGGTTATA
* * * * * * *
3724 CGGGAGCATCGGACTCCATCGGTAACATAAGTCGATGGAGGTGAGGGACTATCGGAAAGCATCAG
1 CGGGAGCATCGGACACCATCGGTAACTTAGGTCGATGGTGGTGCGAGACCATCGGAAAGCATCAG
* * * *
3789 CGCTTTGGTACCTTTGATGTG
66 CACCTTGGAACCTTAGATGTG
* * * * *
3810 CAGGAGCATCGGACGCCATCAGCAACTTAGGTCGATGGTGGTGCGAGACCATCGGGAAGCATC-G
1 CGGGAGCATCGGACACCATCGGTAACTTAGGTCGATGGTGGTGCGAGACCATCGGAAAGCATCAG
3874 ACACCTTGGAACCTTAGATGTG
66 -CACCTTGGAACCTTAGATGTG
* * * *
3896 CGGGAGCATCAGACACTATCGGTAACTTAGGGCGATTGTGGTGC
1 CGGGAGCATCGGACACCATCGGTAACTTAGGTCGATGGTGGTGC
3940 AGGACCAACG
Statistics
Matches: 106, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
85 1 0.01
86 105 0.99
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.21
Consensus pattern (86 bp):
CGGGAGCATCGGACACCATCGGTAACTTAGGTCGATGGTGGTGCGAGACCATCGGAAAGCATCAG
CACCTTGGAACCTTAGATGTG
Found at i:3980 original size:86 final size:86
Alignment explanation
Indices: 3791--3980 Score: 204
Period size: 86 Copynumber: 2.2 Consensus size: 86
3781 AGCATCAGCG
* * * *
3791 CTTTGGTACCTTTGATGTGCAGGAGCATCGGACGCCATCAGCAACTTAGGTCGATGGTGGTGCGA
1 CTTTGGTACCTTAGATGTGCAGGAGCATCAGACACCATCAGCAACTTAGGGCGATGGTGGTGCGA
* **
3856 GACCATCGGGAAGCATCGACA
66 GACCAACGACAAGCATCGACA
* * * * * * *
3877 CCTTGGAACCTTAGATGTGCGGGAGCATCAGACACTATCGGTAACTTAGGGCGATTGTGGTGC-A
1 CTTTGGTACCTTAGATGTGCAGGAGCATCAGACACCATCAGCAACTTAGGGCGATGGTGGTGCGA
3941 GGACCAACGACAA-CTATCGACA
66 -GACCAACGACAAGC-ATCGACA
* *
3963 CTTTGGTGCCTTGGATGT
1 CTTTGGTACCTTAGATGT
3981 ACGAGATCCT
Statistics
Matches: 84, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
85 2 0.02
86 82 0.98
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (86 bp):
CTTTGGTACCTTAGATGTGCAGGAGCATCAGACACCATCAGCAACTTAGGGCGATGGTGGTGCGA
GACCAACGACAAGCATCGACA
Found at i:4116 original size:43 final size:43
Alignment explanation
Indices: 3998--4124 Score: 141
Period size: 43 Copynumber: 3.0 Consensus size: 43
3988 CCTCAAACTC
* * * * *
3998 CATCGGTACTTTGGT-ACCTTGGATGTGCGAGAGCATCGTACAT
1 CATCGGCACCTTGGTGA-CTTGGATGTGCGGGAGCATCGGACAG
** ** *
4041 TTTCGGCACCTT-GTGACTTGGATGTGTAGGAGCATCGGGCAG
1 CATCGGCACCTTGGTGACTTGGATGTGCGGGAGCATCGGACAG
4083 CATCGGCACCTTGGTGACTTGGATGTGCGGGAGCATCGGACA
1 CATCGGCACCTTGGTGACTTGGATGTGCGGGAGCATCGGACA
4125 CCATTGGTAA
Statistics
Matches: 67, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.19, C:0.21, G:0.33, T:0.27
Consensus pattern (43 bp):
CATCGGCACCTTGGTGACTTGGATGTGCGGGAGCATCGGACAG
Found at i:4711 original size:86 final size:86
Alignment explanation
Indices: 4560--5486 Score: 496
Period size: 86 Copynumber: 10.9 Consensus size: 86
4550 ATTAGCACCA
* * *** * *
4560 TGGTGCCTTAGATGTACGGCAGCATTGGACACCAT-CGATAACTTAGGCCAATGGTGGTGTGGGA
1 TGGTGCCTTGGATGTACGGGAGCATCAAACACCATCCG-TAACTTAGGCCGATGGTGGTGCGGGA
4624 CCATTGGGAAGCAAGGGCATCT
65 CCATTGGGAAGCAAGGGCATCT
* * * * * * * *
4646 TGGTGCCTTGGATGTGCGGGAGCTTCAGATACCATCTGTAACTTAGGCCGATGGAGGTACAGGAC
1 TGGTGCCTTGGATGTACGGGAGCATCAAACACCATCCGTAACTTAGGCCGATGGTGGTGCGGGAC
* * *
4711 CATTGGGATGCAGGGGCACCT
66 CATTGGGAAGCAAGGGCATCT
* *
4732 TGGTGCCTTGGATGTTTC-GGAGCATCAAACACAATCCGTAACTTAGGCCGATGGTGGTGCGGGA
1 TGGTGCCTTGGATG-TACGGGAGCATCAAACACCATCCGTAACTTAGGCCGATGGTGGTGCGGGA
** * *
4796 CCATCAGGAAGCACGGGCATTT
65 CCATTGGGAAGCAAGGGCATCT
* * * * *
4818 TGGTGCCTTGGATGTACGAGAGCATCAAACACCATCCGTAACTTAGTCTGATGGTGGTGTGGGAG
1 TGGTGCCTTGGATGTACGGGAGCATCAAACACCATCCGTAACTTAGGCCGATGGTGGTGCGGGAC
*** * * *
4883 CATCAAGAAGCAACGGTACCT
66 CATTGGGAAGCAAGGGCATCT
* * * * ** * * * * * *
4904 TGTTGCCCTGGATGTACGGGAGTATCGAACACCATTAGTAACATAGGTCGATAGTGCTAC-GAAC
1 TGGTGCCTTGGATGTACGGGAGCATCAAACACCATCCGTAACTTAGGCCGATGGTGGTGCGGGAC
** * *
4968 CATTGGGAAGCATCGGTACCT
66 CATTGGGAAGCAAGGGCATCT
* ** * * * *
4989 TAGTGCCTTGGATGTTTGAGAGCA-CTAGACACCAT-CGATAACTTAGGTCGATGGTGGTGCGAG
1 TGGTGCCTTGGATGTACGGGAGCATC-AAACACCATCCG-TAACTTAGGCCGATGGTGGTGCGGG
* * * *
5052 ACCATCGAGAAGCACGGGCACCT
64 ACCATTGGGAAGCAAGGGCATCT
** * ** *
5075 TCATG-C-TGTATG-A---GAGCATTGAACACCAT-CGTCAACTTA-GCCTGATGGTGGTGTGGG
1 TGGTGCCTTGGATGTACGGGAGCATCAAACACCATCCGT-AACTTAGGCC-GATGGTGGTGCGGG
* * *** ** *
5132 ACCATTAGGTAGCGTCGATACCT
64 ACCATTGGGAAGCAAGGGCATCT
* ** * * * ** * * *
5155 TGGTGCCTTGGTTGTGTGGGAGCATCAGACACCATCAGTAACATAGATCGATGGGGGTGTGGTAC
1 TGGTGCCTTGGATGTACGGGAGCATCAAACACCATCCGTAACTTAGGCCGATGGTGGTGCGGGAC
* * ** *
5220 TATCGGGAAGCATTGGCACCT
66 CATTGGGAAGCAAGGGCATCT
* * ** * * * * *
5241 TGGTGCGTTAGATGTGTGGGAGCATCGAACACCATCAGTAACATAGGCTGATGGTGGTGTGGGAC
1 TGGTGCCTTGGATGTACGGGAGCATCAAACACCATCCGTAACTTAGGCCGATGGTGGTGCGGGAC
* **** *
5306 CATTGGGGAGCATCAACACCT
66 CATTGGGAAGCAAGGGCATCT
* ** ** ** * * *
5327 TGGTGCCTTAGATGTGTGGGAGCATTGAACACCATCAATAACATAGGCTGATGGTGGTGTGGGAC
1 TGGTGCCTTGGATGTACGGGAGCATCAAACACCATCCGTAACTTAGGCCGATGGTGGTGCGGGAC
* ** * *
5392 CATTAGGAAGCATCGACACCT
66 CATTGGGAAGCAAGGGCATCT
* * ** * * * * * *
5413 TGGTACCTTGGATG-AGTGGGAGCATCGGACATCATCGGTAACTTAAGTCGTTGTTGGTGCGGGA
1 TGGTGCCTTGGATGTA-CGGGAGCATCAAACACCATCCGTAACTTAGGCCGATGGTGGTGCGGGA
*
5477 CCAATGGGAA
65 CCATTGGGAA
5487 CCATCGGTAC
Statistics
Matches: 657, Mismatches: 166, Indels: 36
0.76 0.19 0.04
Matches are distributed among these distances:
79 3 0.00
80 49 0.07
81 1 0.00
82 4 0.01
84 7 0.01
85 64 0.10
86 523 0.80
87 6 0.01
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (86 bp):
TGGTGCCTTGGATGTACGGGAGCATCAAACACCATCCGTAACTTAGGCCGATGGTGGTGCGGGAC
CATTGGGAAGCAAGGGCATCT
Found at i:5301 original size:43 final size:43
Alignment explanation
Indices: 5254--5395 Score: 126
Period size: 43 Copynumber: 3.3 Consensus size: 43
5244 TGCGTTAGAT
* *
5254 GTGTGGGAGCATCGAACACCATCAGTAACATAGGCTGATGGTG
1 GTGTGGGAGCATTGAACACCATCAATAACATAGGCTGATGGTG
* *** * * * * * * *
5297 GTGTGGGACCATTGGGGAGCATCAACACCTTGGTGCCTTA-GAT-
1 GTGTGGGAGCATTGAACACCATCAATAACATAG-G-CTGATGGTG
5340 GTGTGGGAGCATTGAACACCATCAATAACATAGGCTGATGGTG
1 GTGTGGGAGCATTGAACACCATCAATAACATAGGCTGATGGTG
*
5383 GTGTGGGACCATT
1 GTGTGGGAGCATT
5396 AGGAAGCATC
Statistics
Matches: 70, Mismatches: 25, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
41 3 0.04
42 3 0.04
43 58 0.83
44 3 0.04
45 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.24
Consensus pattern (43 bp):
GTGTGGGAGCATTGAACACCATCAATAACATAGGCTGATGGTG
Found at i:5329 original size:172 final size:169
Alignment explanation
Indices: 4554--5501 Score: 675
Period size: 172 Copynumber: 5.6 Consensus size: 169
4544 GACACCATTA
* * * * * * **
4554 GCACCATGGTGCCTTAGATGTACGGCAGCATTGGACACCATCGATAACTTAGGCCAATGGTGGTG
1 GCACCTTGGTGCCTTGGATGTATGGGAGCATCGAACACCATCG-TAACTTAGGCTGATGGTGGTG
** * * * * *
4619 TGGGACCATTGGGAAGCAAGGGCATCTTGGTGCCTTGGATGTGCGGGAGCTTCAGATACCATCTG
65 TGGGACCATTGGGAAGCATCGGCACCTTGGTGCCTTGGATGTGTGGGAGCATCAGACACCATCAG
* * ** * * **
4684 TAACTTAGGCCGATGGAGGTACAGGACCATTGGGATGCAGGG
130 TAACTTA-GTCGATGGTGGT-GTGGACCATCGGGAAGCATCG
* * * * *
4726 GCACCTTGGTGCCTTGGATGTTTCGGAGCATCAAACACAATCCGTAACTTAGGCCGATGGTGGTG
1 GCACCTTGGTGCCTTGGATGTATGGGAGCATCGAACACCAT-CGTAACTTAGGCTGATGGTGGTG
* ** ** ** * * *
4791 CGGGACCATCAGGAAGCA-CGGGCATTTTGGTGCCTTGGATGTACGAGAGCATCAAACACCATCC
65 TGGGACCATTGGGAAGCATC-GGCACCTTGGTGCCTTGGATGTGTGGGAGCATCAGACACCATCA
* ** *
4855 GTAACTTAGTCTGATGGTGGTGTGGGAGCATCAAGAAGCAACG
129 GTAACTTAGTC-GATGGTGGTGT-GGACCATCGGGAAGCATCG
* * * * * * * * *
4898 GTACCTTGTTGCCCTGGATGTACGGGAGTATCGAACACCATTAGTAACATAGG-TCGATAGTGCT
1 GCACCTTGGTGCCTTGGATGTATGGGAGCATCGAACACCA-TCGTAACTTAGGCT-GATGGTGGT
** * * * * *
4962 -ACGAACCATTGGGAAGCATCGGTACCTTAGTGCCTTGGATGTTTGAGAGCA-CTAGACACCATC
64 GTGGGACCATTGGGAAGCATCGGCACCTTGGTGCCTTGGATGTGTGGGAGCATC-AGACACCATC
* *
5025 -GATAACTTAGGTCGATGGTGGTGCGAGACCATCGAGAAGCA-CGG
128 AG-TAACTTA-GTCGATGGTGGTGTG-GACCATCGGGAAGCATC-G
* * * * *
5069 GCACC-T--T--CAT-GCTGTATGAGAGCATTGAACACCATCGTCAACTTAGCCTGATGGTGGTG
1 GCACCTTGGTGCCTTGGATGTATGGGAGCATCGAACACCATCGT-AACTTAGGCTGATGGTGGTG
* * * ** *
5128 TGGGACCATTAGGTAGCGTCGATACCTTGGTGCCTTGGTTGTGTGGGAGCATCAGACACCATCAG
65 TGGGACCATTGGGAAGCATCGGCACCTTGGTGCCTTGGATGTGTGGGAGCATCAGACACCATCAG
* * * *
5193 TAACATAGATCGATGGGGGTGTGGTACTATCGGGAAGCATTG
130 TAACTTAG-TCGATGGTGGTGTGG-ACCATCGGGAAGCATCG
* * * *
5235 GCACCTTGGTGCGTTAGATGTGTGGGAGCATCGAACACCATCAGTAACATAGGCTGATGGTGGTG
1 GCACCTTGGTGCCTTGGATGTATGGGAGCATCGAACACCATC-GTAACTTAGGCTGATGGTGGTG
* ** * *
5300 TGGGACCATTGGGGAGCATCAACACCTTGGTGCCTTAGATGTGTGGGAGCAT-TGAACACCATCA
65 TGGGACCATTGGGAAGCATCGGCACCTTGGTGCCTTGGATGTGTGGGAGCATCAG-ACACCATCA
* * * **
5364 ATAACATAGGCTGATGGTGGTGTGGGACCATTAGGAAGCATCG
129 GTAACTTAGTC-GATGGTGGTGT-GGACCATCGGGAAGCATCG
* * * * * * *
5407 ACACCTTGGTACCTTGGATG-AGTGGGAGCATCGGACATCATCGGTAACTTAAG-TCGTTGTTGG
1 GCACCTTGGTGCCTTGGATGTA-TGGGAGCATCGAACACCATC-GTAACTTAGGCT-GATGGTGG
* * * *
5470 TGCGGGACCAATGGGAACCATCGGTACCTTGG
63 TGTGGGACCATTGGGAAGCATCGGCACCTTGG
5502 ATGTGTATGA
Statistics
Matches: 611, Mismatches: 133, Indels: 64
0.76 0.16 0.08
Matches are distributed among these distances:
164 3 0.00
165 34 0.06
166 89 0.15
167 3 0.00
168 1 0.00
169 1 0.00
170 5 0.01
171 88 0.14
172 380 0.62
173 7 0.01
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (169 bp):
GCACCTTGGTGCCTTGGATGTATGGGAGCATCGAACACCATCGTAACTTAGGCTGATGGTGGTGT
GGGACCATTGGGAAGCATCGGCACCTTGGTGCCTTGGATGTGTGGGAGCATCAGACACCATCAGT
AACTTAGTCGATGGTGGTGTGGACCATCGGGAAGCATCG
Found at i:5562 original size:43 final size:43
Alignment explanation
Indices: 5510--5702 Score: 206
Period size: 43 Copynumber: 4.5 Consensus size: 43
5500 GGATGTGTAT
* * *
5510 GAGCCTCGGACACCATCGATATCTTGGTGTCTTGGATGTACGG
1 GAGCATCGGACACCATCGACACCTTGGTGTCTTGGATGTACGG
** *
5553 GAGCATCGGACACCATCGGTATCTTGGTGTCTTGGATGTACGG
1 GAGCATCGGACACCATCGACACCTTGGTGTCTTGGATGTACGG
* * * * *
5596 GAGCATCGGACACCATCAACACCTTGTTGACTTAGATGTTCGG
1 GAGCATCGGACACCATCGACACCTTGGTGTCTTGGATGTACGG
* * * * * * * *
5639 GAGCATCGGGCAGCTTCAACACCTTGATGCCTTGGAGGTGCGG
1 GAGCATCGGACACCATCGACACCTTGGTGTCTTGGATGTACGG
*
5682 GAGCATGGGACACCATCGACA
1 GAGCATCGGACACCATCGACA
5703 ACATAGGCCG
Statistics
Matches: 127, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 127 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (43 bp):
GAGCATCGGACACCATCGACACCTTGGTGTCTTGGATGTACGG
Found at i:6574 original size:43 final size:43
Alignment explanation
Indices: 6498--6585 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
6488 GCCGATGGTG
* ** *
6498 GTGCGAGACCATCAGGAATCATTGGCACGTTGGTGCCTTGGAT
1 GTGCGAGACCATCAGGAAGCATAAGCACCTTGGTGCCTTGGAT
* * **
6541 GTGCGTGACCATCGGGAAGCATAAGCACCTTGGTGTTTTGGAT
1 GTGCGAGACCATCAGGAAGCATAAGCACCTTGGTGCCTTGGAT
6584 GT
1 GT
6586 ACTGGAGCCT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.27
Consensus pattern (43 bp):
GTGCGAGACCATCAGGAAGCATAAGCACCTTGGTGCCTTGGAT
Found at i:6787 original size:43 final size:43
Alignment explanation
Indices: 6731--6908 Score: 180
Period size: 43 Copynumber: 4.2 Consensus size: 43
6721 GTTTCTTCGG
* * *
6731 GAGCATCGGACACCATCGGTACCTTGGTGCCTTGGATGTGCGA
1 GAGCATCAGACACCATCGGCACCTTGGTGCCTTCGATGTGCGA
* * * *
6774 GAGCATCAAACACCATCGGCACCTTGGTGCTTTGGAT-TGTGA
1 GAGCATCAGACACCATCGGCACCTTGGTGCCTTCGATGTGCGA
* ** * *
6816 GAGCAT-AGGATACCATCGGCACCTTGGCACCTTCGATTTGCGG
1 GAGCATCA-GACACCATCGGCACCTTGGTGCCTTCGATGTGCGA
** * * *
6859 GAGTGTCAGACACCATCGGTACCTTAGTGCCTTCAATGTGCGA
1 GAGCATCAGACACCATCGGCACCTTGGTGCCTTCGATGTGCGA
6902 GAGCATC
1 GAGCATC
6909 TGGCAGTGAT
Statistics
Matches: 107, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
41 1 0.01
42 33 0.31
43 72 0.67
44 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (43 bp):
GAGCATCAGACACCATCGGCACCTTGGTGCCTTCGATGTGCGA
Found at i:6877 original size:85 final size:85
Alignment explanation
Indices: 6731--6888 Score: 199
Period size: 85 Copynumber: 1.9 Consensus size: 85
6721 GTTTCTTCGG
* * ** *
6731 GAGCATCGGACACCATCGGTACCTTGGTGCCTTGGATGTGCGAGAGCATCAAACACCATCGGCAC
1 GAGCATAGGACACCATCGGCACCTTGGCACCTTCGATGTGCGAGAGCATCAAACACCATCGGCAC
*
6796 CTTGGTGCTTTGGATTGTGA
66 CTTAGTGCTTTGGATTGTGA
* * * ** * *
6816 GAGCATAGGATACCATCGGCACCTTGGCACCTTCGATTTGCGGGAGTGTCAGACACCATCGGTAC
1 GAGCATAGGACACCATCGGCACCTTGGCACCTTCGATGTGCGAGAGCATCAAACACCATCGGCAC
6881 CTTAGTGC
66 CTTAGTGC
6889 CTTCAATGTG
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
85 60 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (85 bp):
GAGCATAGGACACCATCGGCACCTTGGCACCTTCGATGTGCGAGAGCATCAAACACCATCGGCAC
CTTAGTGCTTTGGATTGTGA
Found at i:12678 original size:43 final size:43
Alignment explanation
Indices: 12631--13042 Score: 382
Period size: 43 Copynumber: 9.6 Consensus size: 43
12621 GAAGCACAGG
* * * * *
12631 ACACCATCAGTACCTTGGTGCTTTGGATGTCCGGGAGCATCGA
1 ACACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCATCGA
* * *
12674 ACACCATCGGTACCTTGGTGCCTTGGATATGCGAGAGCATCGG
1 ACACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCATCGA
* * * * * * * ** *
12717 ACAACATTGGTACCTTCGTTCCTTAGATATGC-AGGAGTGTCGG
1 ACACCATCGGCACCTTGGTGCCTTGGATGTGCGA-GAGCATCGA
*
12760 ACACCA-CTGGCACCTTGGTGCCTTGGATGTGCGAGAGCATTGA
1 ACACCATC-GGCACCTTGGTGCCTTGGATGTGCGAGAGCATCGA
* * * * * *
12803 ACACCATCGGCACCTTGGGGCATTGGATGTGCGGGAGCGTTGG
1 ACACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCATCGA
* *
12846 ACACCATCGACACCTTGGTGCCTTCGATGTGCGAGAGCATCGA
1 ACACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCATCGA
* *** * * * *
12889 GCATTGTCGACACCTTGGTGCCTTGGGTGTGCGAGAGCGTCGG
1 ACACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCATCGA
* *
12932 ACACCATCGGTACCTTGGTGCCTTGGATGTGTGAGAGCATC-A
1 ACACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCATCGA
* * *
12974 GACACCACCGGCACCTTGGTACCTTGGATGTGCGGGAGCATC-A
1 -ACACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCATCGA
* *
13017 GACACCACCAGCACCTTGGTGCCTTG
1 -ACACCATCGGCACCTTGGTGCCTTG
13043 ATTGTGCAGG
Statistics
Matches: 302, Mismatches: 62, Indels: 10
0.81 0.17 0.03
Matches are distributed among these distances:
42 1 0.00
43 299 0.99
44 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (43 bp):
ACACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCATCGA
Found at i:13049 original size:129 final size:128
Alignment explanation
Indices: 12630--13042 Score: 432
Period size: 129 Copynumber: 3.2 Consensus size: 128
12620 GGAAGCACAG
* * * * *
12630 GACACCATCAGTACCTTGGTGCTTTGGATGTCCGGGAGCATCGAACACCATCGGTACCTTGGTGC
1 GACACCACCAGCACCTTGGTGCCTTGGATGTGCGAGAGCATCGAACACCATCGGTACCTTGGTGC
* * * * * * * * **
12695 CTTGGATATGCGAGAGCATCGGACAACATTGGTACCTTCGTTCCTTAGATATGCAGGAGTGTC
66 CTTGGATGTGCGAGAGCATCGGACACCATCGGCACCTTGGTACCTTAGATGTGCGGGAGCATC
** * * *
12758 GGACACCACTGGCACCTTGGTGCCTTGGATGTGCGAGAGCATTGAACACCATCGGCACCTTGGGG
1 -GACACCACCAGCACCTTGGTGCCTTGGATGTGCGAGAGCATCGAACACCATCGGTACCTTGGTG
* * * * * * * *
12823 CATTGGATGTGCGGGAGCGTTGGACACCATCGACACCTTGGTGCCTTCGATGTGCGAGAGCATC
65 CCTTGGATGTGCGAGAGCATCGGACACCATCGGCACCTTGGTACCTTAGATGTGCGGGAGCATC
**** * * *
12887 GAGCATTGTC-GACACCTTGGTGCCTTGGGTGTGCGAGAGCGTCGGACACCATCGGTACCTTGGT
1 GA-CACCACCAG-CACCTTGGTGCCTTGGATGTGCGAGAGCATCGAACACCATCGGTACCTTGGT
* * * *
12951 GCCTTGGATGTGTGAGAGCATCAGACACCACCGGCACCTTGGTACCTTGGATGTGCGGGAGCATC
64 GCCTTGGATGTGCGAGAGCATCGGACACCATCGGCACCTTGGTACCTTAGATGTGCGGGAGCATC
13016 AGACACCACCAGCACCTTGGTGCCTTG
1 -GACACCACCAGCACCTTGGTGCCTTG
13043 ATTGTGCAGG
Statistics
Matches: 227, Mismatches: 53, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
128 3 0.01
129 221 0.97
130 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (128 bp):
GACACCACCAGCACCTTGGTGCCTTGGATGTGCGAGAGCATCGAACACCATCGGTACCTTGGTGC
CTTGGATGTGCGAGAGCATCGGACACCATCGGCACCTTGGTACCTTAGATGTGCGGGAGCATC
Found at i:13057 original size:86 final size:85
Alignment explanation
Indices: 12630--13042 Score: 441
Period size: 86 Copynumber: 4.8 Consensus size: 85
12620 GGAAGCACAG
* * * * * * *
12630 GACACCATCAGTACCTTGGTGCTTTGGATGTCCGGGAGCATCGAACACCATCGGTACCTTGGTGC
1 GACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGGACACCATCGGCACCTTGGTGC
*
12695 CTTGGATATGCGAGAGCATC
66 CTTGGATGTGCGAGAGCATC
* * * * * * * * *
12715 GGACAACATTGGTACCTTCGTTCCTTAGATATGCAGGAGTGTCGGACACCA-CTGGCACCTTGGT
1 -GACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGGACACCATC-GGCACCTTGGT
*
12779 GCCTTGGATGTGCGAGAGCATT
64 GCCTTGGATGTGCGAGAGCATC
* * * *
12801 GAACACCATCGGCACCTTGGGGCATTGGATGTGCGGGAGCGTTGGACACCATCGACACCTTGGTG
1 G-ACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGGACACCATCGGCACCTTGGTG
*
12866 CCTTCGATGTGCGAGAGCATC
65 CCTTGGATGTGCGAGAGCATC
*** * * * *
12887 GAGCATTGTCGACACCTTGGTGCCTTGGGTGTGCGAGAGCGTCGGACACCATCGGTACCTTGGTG
1 GA-CACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGGACACCATCGGCACCTTGGTG
*
12952 CCTTGGATGTGTGAGAGCATC
65 CCTTGGATGTGCGAGAGCATC
* * * * * *
12973 AGACACCACCGGCACCTTGGTACCTTGGATGTGCGGGAGCATCAGACACCACCAGCACCTTGGTG
1 -GACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGGACACCATCGGCACCTTGGTG
13038 CCTTG
65 CCTTG
13043 ATTGTGCAGG
Statistics
Matches: 265, Mismatches: 57, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
85 3 0.01
86 259 0.98
87 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (85 bp):
GACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGGACACCATCGGCACCTTGGTGC
CTTGGATGTGCGAGAGCATC
Found at i:23440 original size:18 final size:18
Alignment explanation
Indices: 23417--23453 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
23407 TCTTAGGAGC
*
23417 ATTTTGTCCCCATTTAGA
1 ATTTTGACCCCATTTAGA
*
23435 ATTTTGACTCCATTTAGA
1 ATTTTGACCCCATTTAGA
23453 A
1 A
23454 GTAGAAGAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.19, G:0.11, T:0.43
Consensus pattern (18 bp):
ATTTTGACCCCATTTAGA
Found at i:24611 original size:5 final size:5
Alignment explanation
Indices: 24598--24629 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
24588 TTCAATTATT
*
24598 TTTTA TTTTC TTTTC TTTTC TTTTC TTTTC TT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TT
24630 CCAAATAGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:26490 original size:27 final size:28
Alignment explanation
Indices: 26458--26521 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
26448 CAATGAATGC
*
26458 AAACAAAACA-TGT-TATGACAAAAACAA
1 AAACAAAACACT-TATATCACAAAAACAA
*
26485 CAACAAAAACACTTATATCACAAAAACAA
1 AAAC-AAAACACTTATATCACAAAAACAA
26514 AAACAAAA
1 AAACAAAA
26522 ACAAAAGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 3 0.10
28 11 0.35
29 17 0.55
ACGTcount: A:0.66, C:0.19, G:0.03, T:0.12
Consensus pattern (28 bp):
AAACAAAACACTTATATCACAAAAACAA
Found at i:30918 original size:17 final size:17
Alignment explanation
Indices: 30896--30933 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
30886 AGTTTTCATA
*
30896 CATTTTTATTGT-GTCTG
1 CATTTTAATTGTCGT-TG
30913 CATTTTAATTGTCGTTG
1 CATTTTAATTGTCGTTG
30930 CATT
1 CATT
30934 CATTTTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 17 0.89
18 2 0.11
ACGTcount: A:0.16, C:0.13, G:0.16, T:0.55
Consensus pattern (17 bp):
CATTTTAATTGTCGTTG
Found at i:34349 original size:17 final size:17
Alignment explanation
Indices: 34335--34377 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
34325 AGTTTTAAAT
34335 TTTAA-TTTATTTTAAG
1 TTTAATTTTATTTTAAG
*
34351 TTTAATTTTATTTTGAG
1 TTTAATTTTATTTTAAG
*
34368 TTTAAATTTA
1 TTTAATTTTA
34378 AAGTTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 5 0.21
17 19 0.79
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (17 bp):
TTTAATTTTATTTTAAG
Found at i:34355 original size:23 final size:24
Alignment explanation
Indices: 34328--34387 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 24
34318 TAAACCCAGT
* *
34328 TTTAAATTTTAATTT-ATTTTAAG
1 TTTAAATTTTAATTTGAGTTTAAA
*
34351 TTT-AATTTTATTTTGAGTTTAAA
1 TTTAAATTTTAATTTGAGTTTAAA
*
34374 TTTAAAGTTTAATT
1 TTTAAATTTTAATT
34388 AAATGTTCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 10 0.33
23 12 0.40
24 8 0.27
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (24 bp):
TTTAAATTTTAATTTGAGTTTAAA
Found at i:34488 original size:18 final size:18
Alignment explanation
Indices: 34465--34499 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
34455 TTCAATTGAT
*
34465 CCAAACACTCAAAATAAC
1 CCAAACACTAAAAATAAC
*
34483 CCAAACCCTAAAAATAA
1 CCAAACACTAAAAATAA
34500 AAATTCTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.31, G:0.00, T:0.11
Consensus pattern (18 bp):
CCAAACACTAAAAATAAC
Found at i:36108 original size:59 final size:58
Alignment explanation
Indices: 36009--36292 Score: 233
Period size: 59 Copynumber: 4.9 Consensus size: 58
35999 TTGACCCTTG
* *
36009 AACTTCTCAAAAATTATATTTTTCCCC-GAACTTCTCAAAAATTACATTTTTGCTCTCA
1 AACTTC-CAAAAATTACATTTTTCCCCTGAACTTCTCAAAAATTACATTTTTGCCCTCA
* * *
36067 AACTTCCAATAATTACATTTTTGCCCCTAAACTTCTCAAAAATTACATTTTTGCCCTCG
1 AACTTCCAAAAATTACATTTTT-CCCCTGAACTTCTCAAAAATTACATTTTTGCCCTCA
* ** * *
36126 AACTT-CAGAAAATGACATTTTTAACCTCGAACTTCT-AAAAATTACATTTTTAGCCAT-G
1 AACTTCCA-AAAATTACATTTTTCCCCT-GAACTTCTCAAAAATTACATTTTT-GCCCTCA
* * * * * * *
36184 AACTTCTCAAAAATCACATTTTTTCTCTCGAACTTCT-AAAAATCACA-TTTGGCCCCCG
1 AACTTC-CAAAAATTACATTTTTCCCCT-GAACTTCTCAAAAATTACATTTTTGCCCTCA
** * *
36242 AACTTCCAAAAAACACATTTTGACCCCATGAA-TT-TCTAAAATTACCATTTT
1 AACTTCCAAAAATTACATTTT-TCCCC-TGAACTTCTCAAAAATTA-CATTTT
36293 ACCCCTAGAC
Statistics
Matches: 188, Mismatches: 25, Indels: 25
0.79 0.11 0.11
Matches are distributed among these distances:
56 1 0.01
57 39 0.21
58 53 0.28
59 93 0.49
60 2 0.01
ACGTcount: A:0.34, C:0.25, G:0.06, T:0.36
Consensus pattern (58 bp):
AACTTCCAAAAATTACATTTTTCCCCTGAACTTCTCAAAAATTACATTTTTGCCCTCA
Found at i:36113 original size:30 final size:30
Alignment explanation
Indices: 35944--36325 Score: 218
Period size: 29 Copynumber: 13.0 Consensus size: 30
35934 CCCAAAAGGT
35944 CCCTGAACTGTC-CAAAAA-T-CATATTTTGAC
1 CCCTGAACT-TCTCAAAAATTACAT-TTTTG-C
* * * * *
35974 CCTTAAACTTTTCCAAAATCACA-TTTTGAC
1 CCCTGAACTTCTCAAAAATTACATTTTTG-C
* *
36004 CCTTGAACTTCTCAAAAATTATATTTTT-C
1 CCCTGAACTTCTCAAAAATTACATTTTTGC
36033 CCC-GAACTTCTCAAAAATTACATTTTTG-
1 CCCTGAACTTCTCAAAAATTACATTTTTGC
* * *
36061 CTCTCAAACTTC-CAATAATTACATTTTTGC
1 CCCT-GAACTTCTCAAAAATTACATTTTTGC
*
36091 CCCTAAACTTCTCAAAAATTACATTTTTG-
1 CCCTGAACTTCTCAAAAATTACATTTTTGC
* *
36120 CCCTCGAAC-T-TCAGAAAATGACATTTTT-A
1 CCCT-GAACTTCTCA-AAAATTACATTTTTGC
*
36149 ACCTCGAACTTCT-AAAAATTACATTTTTAG-
1 CCCT-GAACTTCTCAAAAATTACATTTTT-GC
* * *
36179 CCATGAACTTCTCAAAAATCACATTTTT-T
1 CCCTGAACTTCTCAAAAATTACATTTTTGC
* * *
36208 CTCTCGAACTTCT-AAAAATCACA-TTTGGC
1 CCCT-GAACTTCTCAAAAATTACATTTTTGC
* **
36237 CCCCGAACTTC-CAAAAAACACA-TTTTGAC
1 CCCTGAACTTCTCAAAAATTACATTTTTG-C
* *
36266 CCCATGAA-TT-TCTAAAATTACCA-TTTTAC
1 CCC-TGAACTTCTCAAAAATTA-CATTTTTGC
* *
36295 CCCT-AGACATC-CAAAAGTTACCATTTTTGC
1 CCCTGA-ACTTCTCAAAAATTA-CATTTTTGC
36325 C
1 C
36326 TCCAAAATTT
Statistics
Matches: 282, Mismatches: 41, Indels: 58
0.74 0.11 0.15
Matches are distributed among these distances:
27 1 0.00
28 53 0.19
29 115 0.41
30 106 0.38
31 5 0.02
32 2 0.01
ACGTcount: A:0.33, C:0.26, G:0.06, T:0.35
Consensus pattern (30 bp):
CCCTGAACTTCTCAAAAATTACATTTTTGC
Found at i:36169 original size:88 final size:86
Alignment explanation
Indices: 35943--36233 Score: 259
Period size: 88 Copynumber: 3.3 Consensus size: 86
35933 GCCCAAAAGG
* * * * * * *
35943 TCCCT-GAACTGTCCAAAAATCATATTTTGACCCTTAAACTTTTCC-AAAATCACATTTTGACCC
1 TCCCTCGAACT-T-CAAAAATCACATTTTTACTCTCAAAC--TTCCAAAAATTACATTTTTAGCC
* * *
36006 TTGAACTTCTCAAAAATTATATTTT
62 ATAAACTTCTCAAAAATTACATTTT
* * * *
36031 TCCC-CGAACTTCTCAAAAATTACATTTTTGCTCTCAAACTTCCAATAATTACATTTTT-GCCCC
1 TCCCTCGAAC-T-TCAAAAATCACATTTTTACTCTCAAACTTCCAAAAATTACATTTTTAG-CCA
36094 TAAACTTCTCAAAAATTACATTTT
63 TAAACTTCTCAAAAATTACATTTT
* * *
36118 TGCCCTCGAACTTCAGAAAATGACATTTTTAAC-CTCGAACTTCTAAAAATTACATTTTTAGCCA
1 T-CCCTCGAACTTCA-AAAATCACATTTTT-ACTCTCAAACTTCCAAAAATTACATTTTTAGCCA
* *
36182 TGAACTTCTCAAAAATCACATTTTT
63 TAAACTTCTCAAAAATTACA-TTTT
*
36207 TCTCTCGAACTTCTAAAAATCACATTT
1 TCCCTCGAACTTC-AAAAATCACATTT
36234 GGCCCCCGAA
Statistics
Matches: 168, Mismatches: 24, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
86 4 0.02
87 39 0.23
88 110 0.65
89 15 0.09
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.37
Consensus pattern (86 bp):
TCCCTCGAACTTCAAAAATCACATTTTTACTCTCAAACTTCCAAAAATTACATTTTTAGCCATAA
ACTTCTCAAAAATTACATTTT
Found at i:36254 original size:88 final size:87
Alignment explanation
Indices: 35984--36292 Score: 281
Period size: 88 Copynumber: 3.6 Consensus size: 87
35974 CCTTAAACTT
* * * * *
35984 TTCC-AAAATCACATTTTGACCCTTGAACTTCTCAAAAATTATA-TTTTTCCCCGAACTTCTCAA
1 TTCCAAAAATCACATTTTTAGCCATGAACTTCTCAAAAATTACATTTTTTCCTCGAACTTCT-AA
* * *
36047 AAATTACATTTTTGCTCTCAAAC
65 AAATCACATTTTTGCCCTCGAAC
* * * * *
36070 TTCCAATAATTACATTTTT-GCCCCTAAACTTCTCAAAAATTACATTTTTGCCCTCGAACTTC-A
1 TTCCAAAAATCACATTTTTAG-CCATGAACTTCTCAAAAATTACATTTTT-TCCTCGAACTTCTA
* **
36133 GAAAATGACATTTTTAACCTCGAAC
64 -AAAATCACATTTTTGCCCTCGAAC
* * *
36158 TTCTAAAAATTACATTTTTAGCCATGAACTTCTCAAAAATCACATTTTTTCTCTCGAACTTCTAA
1 TTCCAAAAATCACATTTTTAGCCATGAACTTCTCAAAAATTACATTTTTTC-CTCGAACTTCTAA
* *
36223 AAATCACA-TTTGGCCCCCGAAC
65 AAATCACATTTTTGCCCTCGAAC
* * * *
36245 TTCCAAAAAACACATTTTGACCCCATGAA-TT-TCTAAAATTACCATTTT
1 TTCCAAAAATCACATTTTTA-GCCATGAACTTCTCAAAAATTA-CATTTT
36293 ACCCCTAGAC
Statistics
Matches: 181, Mismatches: 32, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
86 12 0.07
87 67 0.37
88 90 0.50
89 12 0.07
ACGTcount: A:0.34, C:0.25, G:0.06, T:0.36
Consensus pattern (87 bp):
TTCCAAAAATCACATTTTTAGCCATGAACTTCTCAAAAATTACATTTTTTCCTCGAACTTCTAAA
AATCACATTTTTGCCCTCGAAC
Found at i:36268 original size:29 final size:29
Alignment explanation
Indices: 35948--36268 Score: 163
Period size: 30 Copynumber: 11.0 Consensus size: 29
35938 AAAGGTCCCT
* **
35948 GAACTGTCCAAAAATCATATTTTGACCCTT
1 GAACT-TCCAAAAATCACATTTTGACCCCC
* **
35978 AAACTTTTCC-AAAATCACATTTTGACCCTT
1 GAAC--TTCCAAAAATCACATTTTGACCCCC
* * *
36008 GAACTTCTCAAAAATTATATTTT--TCCCC
1 GAACTTC-CAAAAATCACATTTTGACCCCC
* * *
36036 GAACTTCTCAAAAATTACATTTTTG-CTCTC
1 GAACTTC-CAAAAATCACA-TTTTGACCCCC
* * * *
36066 AAACTTCCAATAATTACATTTTTG-CCCCT
1 GAACTTCCAAAAATCACA-TTTTGACCCCC
* * *
36095 AAACTTCTCAAAAATTACATTTTTG-CCCTC
1 GAACTTC-CAAAAATCACA-TTTTGACCCCC
* * * *
36125 GAACTT-CAGAAAATGACATTTTTAACCTC
1 GAACTTCCA-AAAATCACATTTTGACCCCC
* * * * **
36154 GAACTTCTAAAAATTACATTTTTAGCCAT
1 GAACTTCCAAAAATCACATTTTGACCCCC
** * *
36183 GAACTTCTCAAAAATCACATTTTTTCTCTC
1 GAACTTC-CAAAAATCACATTTTGACCCCC
* *
36213 GAACTTCTAAAAATCACA-TTTGGCCCCC
1 GAACTTCCAAAAATCACATTTTGACCCCC
*
36241 GAACTTCCAAAAAACACATTTTGACCCC
1 GAACTTCCAAAAATCACATTTTGACCCC
36269 ATGAATTTCT
Statistics
Matches: 235, Mismatches: 44, Indels: 25
0.77 0.14 0.08
Matches are distributed among these distances:
28 51 0.22
29 89 0.38
30 91 0.39
31 3 0.01
32 1 0.00
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.35
Consensus pattern (29 bp):
GAACTTCCAAAAATCACATTTTGACCCCC
Found at i:36378 original size:29 final size:29
Alignment explanation
Indices: 36333--36389 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
36323 GCCTCCAAAA
*
36333 TTTCCAAAAGTCACATTTTCAACCTTAAAC
1 TTTCCAAAAGTCACATTTT-AACCCTAAAC
*
36363 TTTCCAAAA-TTACATTTTAACCCTAAA
1 TTTCCAAAAGTCACATTTTAACCCTAAA
36390 ATCTCTGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.32
29 8 0.32
30 9 0.36
ACGTcount: A:0.39, C:0.25, G:0.02, T:0.35
Consensus pattern (29 bp):
TTTCCAAAAGTCACATTTTAACCCTAAAC
Found at i:36810 original size:97 final size:97
Alignment explanation
Indices: 36644--36826 Score: 303
Period size: 97 Copynumber: 1.9 Consensus size: 97
36634 AAAATATTTA
* * *
36644 AAATCGAGGCAATATTCCTTTATTTTGGGTTTTAAAAATTTGTGCTTTAACTTACTAGGCGCGAG
1 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTAAAAATTTGTGCATTAACTTACTAGGCGAGAG
*
36709 TTTTCTTGAAACCGAGATAATTAAATACTCTT
66 TTTTCTTCAAACCGAGATAATTAAATACTCTT
*
36741 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTAAAAATTTGTGCATTAACTTACTAGGCGAGAT
1 AAATCGAGGCAATATTCCTTTATTTCGGGTTTTAAAAATTTGTGCATTAACTTACTAGGCGAGAG
* *
36806 TTTTCTTCAAATCGGGATAAT
66 TTTTCTTCAAACCGAGATAAT
36827 CGAATACCCT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
97 79 1.00
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (97 bp):
AAATCGAGGCAATATTCCTTTATTTCGGGTTTTAAAAATTTGTGCATTAACTTACTAGGCGAGAG
TTTTCTTCAAACCGAGATAATTAAATACTCTT
Found at i:48328 original size:39 final size:39
Alignment explanation
Indices: 48284--49091 Score: 272
Period size: 39 Copynumber: 20.7 Consensus size: 39
48274 TGAAGATTAG
*
48284 ATCTCTTACCCCCAGCCTAGGGCAGATCACCATCAGCAA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAGCAA
**
48323 ATCTCTTACCCCGAGCCTACTGCAGATTGCAACCATTC-G---
1 ATCTCTTACCCCGAGCCTAGGGCAGA-T-C-ACCA-TCAGCAA
* ** * *
48362 ATCTTTTACCGAGAGCCTGAGGGAAGATCACCATAAGCAA
1 ATCTCTTACCCCGAGCCT-AGGGCAGATCACCATCAGCAA
* * * * *
48402 ATCTCTTACCCCGATCAT-GTGGCAGATCA-CAGCCATTC-G
1 ATCTCTTACCCCGAGCCTAG-GGCAGATCACCA-TCA-GCAA
* * *
48441 ATCTTTTAGCCCGAG-CTAGGGGGCAGATTACCATCAGCAA
1 ATCTCTTACCCCGAGCCTA--GGGCAGATCACCATCAGCAA
*** * * * **
48481 ATCTCTTACCCCGATTATGGGGCAAATTGTAGCCAT---TTA
1 ATCTCTTACCCCGAGCCTAGGGCAGA-T-CA-CCATCAGCAA
* *
48520 ATCTCTAACCCCGAGCCTAGGGCAGATCACCATCAGTAA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAGCAA
* * * * * *
48559 ATCTCTTACCCCAAGACTGGGGTAGATTGTAACCAT--TC-A
1 ATCTCTTACCCCGAGCCTAGGGCAGA---TCACCATCAGCAA
* *** * *
48598 ATCTCTTACCCCTAGACC--GTGGCAGAT-TGTAGTCATTC-G
1 ATCTCTTACCCCGAG-CCTAG-GGCAGATCACCA-TCA-GCAA
*
48637 ATCTCTTACCTCGAGCCTAGGGCAGATCACCATCAGCAA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAGCAA
* ** * ** **
48676 ATCCCTT-CCCCGATACTGGGGCAGAT-TGCATCTA-CTCG
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATC-AGC-AA
* * *
48714 ATCTCTTACCCCGAGCCTAGGGTAAATCACCATCAACAA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAGCAA
* * * * * *
48753 ATCTCTTACCTCGAGACT-GAGGCAGATTA-CAGCTATTC-G
1 ATCTCTTACCCCGAGCCTAG-GGCAGATCACCATC-A-GCAA
** * *
48792 ATCTCTTACCCTAAGCTTGGGGCA-AGTCACCATCAGCAA
1 ATCTCTTACCCCGAGCCTAGGGCAGA-TCACCATCAGCAA
48831 ATCTCTTACCCCGAGCCTAGGGCAGATTACAGCCATTC-G---
1 ATCTCTTACCCCGAGCCTAGGGCAGA-T-CA-CCA-TCAGCAA
* * *
48870 ATCTCTTATCCCGAG-CTTGAGGCAGATCACCATCAGTAA
1 ATCTCTTACCCCGAGCCTAG-GGCAGATCACCATCAGCAA
* * * * * *
48909 GTCTTTTGCCCCGAGACTAAGGCAGATTGCAGCCAT--TC-A
1 ATCTCTTACCCCGAGCCTAGGGCAGA-T-CA-CCATCAGCAA
* * * * *
48948 ATCTCTTACCCTGAGCCT-GGGAAAAATCATCATCAGTAA
1 ATCTCTTACCCCGAGCCTAGGG-CAGATCACCATCAGCAA
* *
48987 ATCTCTTACCCCGATCAT-GAGGCAGATTACAGCCATTC-G---
1 ATCTCTTACCCCGAGCCTAG-GGCAGA-T-CA-CCA-TCAGCAA
*
49026 ATCTCTTACCTCGAGCCTAGGGCAGATCACCATCAGCAA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAGCAA
* *
49065 ATCTCTTTCCCCGAGCCTGGGGCAGAT
1 ATCTCTTACCCCGAGCCTAGGGCAGAT
49092 TGAAACCATT
Statistics
Matches: 553, Mismatches: 140, Indels: 152
0.65 0.17 0.18
Matches are distributed among these distances:
35 5 0.01
36 18 0.03
37 17 0.03
38 46 0.08
39 357 0.65
40 65 0.12
41 13 0.02
42 26 0.05
43 6 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.24
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAGCAA
Found at i:48580 original size:78 final size:78
Alignment explanation
Indices: 48284--48609 Score: 300
Period size: 79 Copynumber: 4.2 Consensus size: 78
48274 TGAAGATTAG
* * * ***
48284 ATCTCTTACCCCCAGCCTAGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCCTACTGCAGA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAGCAAATCTCTTACCCCAAGACTGGGGCAGA
*
48349 TTGCAACCATTCG
66 TTGCAACCATTCA
* ** * * *
48362 ATCTTTTACCGAGAGCCTGAGGGAAGATCACCATAAGCAAATCTCTTACCCC--GATCATGTGGC
1 ATCTCTTACCCCGAGCCT-AGGGCAGATCACCATCAGCAAATCTCTTACCCCAAGA-C-TGGGGC
** * *
48425 AGATCACAGCCATTCG
63 AGATTGCAACCATTCA
* * * **
48441 ATCTTTTAGCCCGAG-CTAGGGGGCAGATTACCATCAGCAAATCTCTTACCCCGATTA-TGGGGC
1 ATCTCTTACCCCGAGCCTA--GGGCAGATCACCATCAGCAAATCTCTTACCCC-AAGACTGGGGC
* * * *
48504 AAATTGTAGCCATTTA
63 AGATTGCAACCATTCA
* * *
48520 ATCTCTAACCCCGAGCCTAGGGCAGATCACCATCAGTAAATCTCTTACCCCAAGACTGGGGTAGA
1 ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAGCAAATCTCTTACCCCAAGACTGGGGCAGA
*
48585 TTGTAACCATTCA
66 TTGCAACCATTCA
48598 ATCTCTTACCCC
1 ATCTCTTACCCC
48610 TAGACCGTGG
Statistics
Matches: 199, Mismatches: 39, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
77 4 0.02
78 76 0.38
79 115 0.58
80 3 0.02
82 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (78 bp):
ATCTCTTACCCCGAGCCTAGGGCAGATCACCATCAGCAAATCTCTTACCCCAAGACTGGGGCAGA
TTGCAACCATTCA
Found at i:48798 original size:194 final size:195
Alignment explanation
Indices: 48435--48802 Score: 456
Period size: 194 Copynumber: 1.9 Consensus size: 195
48425 AGATCACAGC
* * *
48435 CATTCGATCTTTTAGCCCGAGCTAGGGGGCAGATTACCATCAGCAAATCTCTTACCCCGATTATG
1 CATTCGATCTCTTAGCCCGAGCTA-GGGGCAGATCACCATCAGCAAATCCCTTACCCCGATTATG
* * * * **
48500 GGGCAAATTGTAGCCATTTAATCTCTAACCCCGAGCCTAGGGCAGATCACCATCAGTAAATCTCT
65 GGGCAAATTGCAGCCACTCAATCTCTAACCCCGAGCCTAGGGCAAATCACCATCAACAAATCTCT
* * **
48565 TACCCCAAGACTGGGGTAGATTGTAACCATTCAATCTCTTACCCCTAGACCGTGGCAGATTGTAG
130 TACCCCAAGACTGAGGCAGATTACAACCATTCAATCTCTTACCCCTAGACCGTGGCAGATTGTAG
48630 T
195 T
48631 CATTCGATCTCTTA-CCTCGAGCCTA-GGGCAGATCACCATCAGCAAATCCCTT-CCCCGA-TAC
1 CATTCGATCTCTTAGCC-CGAG-CTAGGGGCAGATCACCATCAGCAAATCCCTTACCCCGATTA-
* * * * * *
48692 TGGGGCAGATTGCATCTACTCGATCTCTTACCCCGAGCCTAGGGTAAATCACCATCAACAAATCT
63 TGGGGCAAATTGCAGCCACTCAATCTCTAACCCCGAGCCTAGGGCAAATCACCATCAACAAATCT
* * * * *
48757 CTTACCTCGAGACTGAGGCAGATTACAGCTATTCGATCTCTTACCC
128 CTTACCCCAAGACTGAGGCAGATTACAACCATTCAATCTCTTACCC
48803 TAAGCTTGGG
Statistics
Matches: 145, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
193 2 0.01
194 96 0.66
195 27 0.19
196 17 0.12
197 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (195 bp):
CATTCGATCTCTTAGCCCGAGCTAGGGGCAGATCACCATCAGCAAATCCCTTACCCCGATTATGG
GGCAAATTGCAGCCACTCAATCTCTAACCCCGAGCCTAGGGCAAATCACCATCAACAAATCTCTT
ACCCCAAGACTGAGGCAGATTACAACCATTCAATCTCTTACCCCTAGACCGTGGCAGATTGTAGT
Found at i:48822 original size:78 final size:78
Alignment explanation
Indices: 48597--49153 Score: 538
Period size: 78 Copynumber: 7.2 Consensus size: 78
48587 GTAACCATTC
* * * ** * *
48597 AATCTCTTACCCCTAGACCGTGGCAGATTGTAGTCATTCGATCTCTTA-CCTCGAGCCTAGGGCA
1 AATCTCTTACCCCGAGACTGAGGCAGATTACAGCCATTCGATCTCTTACCCT-GAGCCTGGGGCA
48661 GATCACCATCAGCA
65 GATCACCATCAGCA
* * * * * * * * * * *
48675 AATCCCTT-CCCCGATACTGGGGCAGATTGCATCTACTCGATCTCTTACCCCGAGCCTAGGGTAA
1 AATCTCTTACCCCGAGACTGAGGCAGATTACAGCCATTCGATCTCTTACCCTGAGCCTGGGGCAG
*
48739 ATCACCATCAACA
66 ATCACCATCAGCA
* * * *
48752 AATCTCTTACCTCGAGACTGAGGCAGATTACAGCTATTCGATCTCTTACCCTAAGCTTGGGGCA-
1 AATCTCTTACCCCGAGACTGAGGCAGATTACAGCCATTCGATCTCTTACCCTGAGCCTGGGGCAG
48816 AGTCACCATCAGCA
66 A-TCACCATCAGCA
* * *
48830 AATCTCTTACCCCGAGCCT-AGGGCAGATTACAGCCATTCGATCTCTTATCCC-GAGCTTGAGGC
1 AATCTCTTACCCCGAGACTGA-GGCAGATTACAGCCATTCGATCTCTTA-CCCTGAGCCTGGGGC
*
48893 AGATCACCATCAGTA
64 AGATCACCATCAGCA
* * * * * * ** *
48908 AGTCTTTTGCCCCGAGACTAAGGCAGATTGCAGCCATTCAATCTCTTACCCTGAGCCTGGGAAAA
1 AATCTCTTACCCCGAGACTGAGGCAGATTACAGCCATTCGATCTCTTACCCTGAGCCTGGGGCAG
* *
48973 ATCATCATCAGTA
66 ATCACCATCAGCA
* *
48986 AATCTCTTACCCCGA-TCATGAGGCAGATTACAGCCATTCGATCTCTTA-CCTCGAGCCTAGGGC
1 AATCTCTTACCCCGAGAC-TGAGGCAGATTACAGCCATTCGATCTCTTACCCT-GAGCCTGGGGC
49049 AGATCACCATCAGCA
64 AGATCACCATCAGCA
* * * * * *
49064 AATCTCTTTCCCCGAGCCTGGGGCAGATTGA-AACCATTTGATCTTTTA-CCTCGAGCCTGGGGC
1 AATCTCTTACCCCGAGACTGAGGCAGATT-ACAGCCATTCGATCTCTTACCCT-GAGCCTGGGGC
* * *
49127 AGATCATCATCAACC
64 AGATCACCATCAGCA
49142 AATCTCTTACCC
1 AATCTCTTACCC
49154 GATCATGGGG
Statistics
Matches: 398, Mismatches: 69, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
77 69 0.17
78 322 0.81
79 7 0.02
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (78 bp):
AATCTCTTACCCCGAGACTGAGGCAGATTACAGCCATTCGATCTCTTACCCTGAGCCTGGGGCAG
ATCACCATCAGCA
Found at i:49610 original size:17 final size:17
Alignment explanation
Indices: 49588--49672 Score: 107
Period size: 17 Copynumber: 5.0 Consensus size: 17
49578 CCAATTTTAA
*
49588 ATTTTAAATTTTAATTT
1 ATTTTAAATTTAAATTT
*
49605 ATTTTAAGTTTAAATTT
1 ATTTTAAATTTAAATTT
* *
49622 ATTTTGAGTTTAAATTT
1 ATTTTAAATTTAAATTT
*
49639 ATTTTAAATTTTAATTT
1 ATTTTAAATTTAAATTT
* *
49656 ATTTTGAGTTTAAATTT
1 ATTTTAAATTTAAATTT
49673 CAAATTTAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 59 1.00
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (17 bp):
ATTTTAAATTTAAATTT
Found at i:49616 original size:6 final size:6
Alignment explanation
Indices: 49583--49681 Score: 53
Period size: 6 Copynumber: 16.8 Consensus size: 6
49573 CAAACCCAAT
* * * * * *
49583 TTTAAA TTTTAAA TTTTAA TTT-AT TTTAAG TTTAAA TTT-AT TTTGAG
1 TTTAAA -TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * * * *
49630 TTTAAA TTT-AT TTTAAA TTTTAA TTT-AT TTTGAG TTTAAA TTTCAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT-AAA
49677 TTTAA
1 TTTAA
49682 TTAAATGTCC
Statistics
Matches: 72, Mismatches: 15, Indels: 11
0.73 0.15 0.11
Matches are distributed among these distances:
5 16 0.22
6 44 0.61
7 12 0.17
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (6 bp):
TTTAAA
Found at i:50351 original size:25 final size:25
Alignment explanation
Indices: 50321--50386 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
50311 CGTTTTATAT
50321 ATATATATATGTA-TTAATA-CATTTA
1 ATATAT-TAT-TATTTAATATCATTTA
* *
50346 TTATATTATTATTTATTATCATTTA
1 ATATATTATTATTTAATATCATTTA
50371 ATATATTCATTTATTT
1 ATATATT-A-TTATTT
50387 TCAAAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
23 2 0.06
24 8 0.24
25 17 0.50
26 1 0.03
27 6 0.18
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATATTATTATTTAATATCATTTA
Found at i:51395 original size:29 final size:30
Alignment explanation
Indices: 51334--51395 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
51324 AACTGTTTAG
* * **
51334 AAATCATATTTTGACCCCTACACTTTTGCA
1 AAATCATATTTTAACCCCTAAACTTTCACA
*
51364 AAATCATATTTTAACCCTTAAAC-TTCACA
1 AAATCATATTTTAACCCCTAAACTTTCACA
51393 AAA
1 AAA
51396 ATTACATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.39, C:0.24, G:0.03, T:0.34
Consensus pattern (30 bp):
AAATCATATTTTAACCCCTAAACTTTCACA
Found at i:51465 original size:29 final size:29
Alignment explanation
Indices: 51371--51578 Score: 167
Period size: 28 Copynumber: 7.2 Consensus size: 29
51361 GCAAAATCAT
* *
51371 ATTTTAACCCTTAAACTTCACAAAAATTAC
1 ATTTTTACCCTCAAACTTC-CAAAAATTAC
*
51401 ATTTTTACCAAT-AAACTTCGCAAAAATTAC
1 ATTTTTACC-CTCAAACTTC-CAAAAATTAC
*
51431 AATTTTT-CCCTCGAACTTCCAAAAATTAC
1 -ATTTTTACCCTCAAACTTCCAAAAATTAC
* *
51460 ATTTTT-CCCTTAAACTTTCAAAAATTAC
1 ATTTTTACCCTCAAACTTCCAAAAATTAC
* * * * * *
51488 ATATTTGCCCTTAAGCTT-TAAAAATCAC
1 ATTTTTACCCTCAAACTTCCAAAAATTAC
* *
51516 A-TTTTAGCCCCCAAACTTCCAAAAATCAC
1 ATTTTTA-CCCTCAAACTTCCAAAAATTAC
* * *
51545 ATTTTTACCCTCGAA-TTTCGAAAATTACC
1 ATTTTTACCCTCAAACTTCCAAAAATTA-C
51574 ATTTT
1 ATTTT
51579 GCCCCCGAAC
Statistics
Matches: 147, Mismatches: 23, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
27 3 0.02
28 56 0.38
29 43 0.29
30 38 0.26
31 7 0.05
ACGTcount: A:0.37, C:0.24, G:0.03, T:0.36
Consensus pattern (29 bp):
ATTTTTACCCTCAAACTTCCAAAAATTAC
Found at i:51569 original size:57 final size:56
Alignment explanation
Indices: 51413--51584 Score: 170
Period size: 57 Copynumber: 3.0 Consensus size: 56
51403 TTTTACCAAT
* * **
51413 AAACTTCGCAAAAATTACAATTTTTCCCTCGAACTTCCAAAAATTACATTTTTCCCTT
1 AAACTTC-CAAAAATTAC-ATTTTTCCCTCGAACTTTCAAAAATTACATTTTGCCCCC
* * * *
51471 AAACTTTCAAAAATTACATATTTGCCCT-TAAGCTTT-AAAAATCACATTTTAGCCCCC
1 AAACTTCCAAAAATTACAT-TTTTCCCTCGAA-CTTTCAAAAATTACATTTT-GCCCCC
* *
51528 AAACTTCCAAAAATCACATTTTTACCCTCGAA-TTTCGAAAATTACCATTTTGCCCCC
1 AAACTTCCAAAAATTACATTTTT-CCCTCGAACTTTCAAAAATTA-CATTTTGCCCCC
51585 GAACATAAAA
Statistics
Matches: 93, Mismatches: 14, Indels: 15
0.76 0.11 0.12
Matches are distributed among these distances:
56 23 0.25
57 56 0.60
58 14 0.15
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.34
Consensus pattern (56 bp):
AAACTTCCAAAAATTACATTTTTCCCTCGAACTTTCAAAAATTACATTTTGCCCCC
Found at i:52122 original size:97 final size:97
Alignment explanation
Indices: 51947--52136 Score: 299
Period size: 97 Copynumber: 2.0 Consensus size: 97
51937 AAAATATTTA
* * * * * **
51947 AAATTGAGGCAATATTTCTTTATTTCGGGTTTTGAAAATTTGTGCCTTAACTTATTAGGCGCGAT
1 AAATCGAGACAATATTCCTTTATTTCGGGTTTTGAAAATTTGTGCCATAACATACAAGGCGCGAT
*
52012 TTTTCTTCAAACCGGGATAATCTAATACTCTT
66 TTTTCTTCAAACCGGGATAATCGAATACTCTT
*
52044 AAATCGAGACAATATTCCTTTATTTCGGGTTTTGAAAATTTGTGCCATAACATACAAGGTGCGAT
1 AAATCGAGACAATATTCCTTTATTTCGGGTTTTGAAAATTTGTGCCATAACATACAAGGCGCGAT
52109 TTTTCTTCAAACCGGGATAATCGAATAC
66 TTTTCTTCAAACCGGGATAATCGAATAC
52137 CCTTTTATAA
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
97 84 1.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (97 bp):
AAATCGAGACAATATTCCTTTATTTCGGGTTTTGAAAATTTGTGCCATAACATACAAGGCGCGAT
TTTTCTTCAAACCGGGATAATCGAATACTCTT
Found at i:53687 original size:2 final size:2
Alignment explanation
Indices: 53674--53703 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
53664 TTGTATAGTA
*
53674 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
53704 TTATGTGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:54144 original size:18 final size:17
Alignment explanation
Indices: 54113--54146 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
54103 AAATTCAAGC
54113 ACATTTTCAATAAACTT
1 ACATTTTCAATAAACTT
*
54130 ACATGTTTCATTAAACT
1 ACAT-TTTCAATAAACT
54147 CAAAAGGACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (17 bp):
ACATTTTCAATAAACTT
Found at i:66601 original size:23 final size:22
Alignment explanation
Indices: 66565--66608 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
66555 TAAATATTTC
*
66565 ATTAAATAATTTGGGTTGAATTA
1 ATTAAATAAATTGGGTT-AATTA
*
66588 ATTAATTAAATTGGGTTAATT
1 ATTAAATAAATTGGGTTAATT
66609 TTATTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (22 bp):
ATTAAATAAATTGGGTTAATTA
Found at i:81204 original size:18 final size:19
Alignment explanation
Indices: 81181--81224 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
81171 AATACAAAAA
81181 CTTCCTCTGT-TTCTTCTT
1 CTTCCTCTGTCTTCTTCTT
*
81199 CTTCCT-TTTCTTCTTCTT
1 CTTCCTCTGTCTTCTTCTT
*
81217 CTTTCTCT
1 CTTCCTCT
81225 TTTTTTTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 19 0.86
19 1 0.05
ACGTcount: A:0.00, C:0.34, G:0.02, T:0.64
Consensus pattern (19 bp):
CTTCCTCTGTCTTCTTCTT
Found at i:90565 original size:18 final size:20
Alignment explanation
Indices: 90531--90567 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
90521 CGCATTTATC
90531 AAAAGTATTTCCATAAATAG
1 AAAAGTATTTCCATAAATAG
90551 AAAAGTA-TT-CATAAATA
1 AAAAGTATTTCCATAAATA
90568 CCTCTAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 2 0.12
20 7 0.41
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.30
Consensus pattern (20 bp):
AAAAGTATTTCCATAAATAG
Found at i:91229 original size:55 final size:55
Alignment explanation
Indices: 91145--91251 Score: 205
Period size: 55 Copynumber: 1.9 Consensus size: 55
91135 TAATATCAGT
91145 AATACTCCAAGCAATCACACGCTTATGCTACTTCAATATATGGATCAATTTTAGC
1 AATACTCCAAGCAATCACACGCTTATGCTACTTCAATATATGGATCAATTTTAGC
*
91200 AATACTCTAAGCAATCACACGCTTATGCTACTTCAATATATGGATCAATTTT
1 AATACTCCAAGCAATCACACGCTTATGCTACTTCAATATATGGATCAATTTT
91252 TCTTCCTAAG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (55 bp):
AATACTCCAAGCAATCACACGCTTATGCTACTTCAATATATGGATCAATTTTAGC
Found at i:100134 original size:8 final size:8
Alignment explanation
Indices: 100098--100144 Score: 55
Period size: 7 Copynumber: 6.2 Consensus size: 8
100088 AGACACGATG
100098 AAGAAAAA
1 AAGAAAAA
*
100106 AA-ATAAA
1 AAGAAAAA
*
100113 AA-AAAGA
1 AAGAAAAA
100120 AAG-AAAA
1 AAGAAAAA
100127 AAGAAAAA
1 AAGAAAAA
100135 AAGAAAAA
1 AAGAAAAA
100143 AA
1 AA
100145 AAGATGAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 17 0.52
8 16 0.48
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (8 bp):
AAGAAAAA
Found at i:100146 original size:18 final size:18
Alignment explanation
Indices: 100098--100148 Score: 77
Period size: 19 Copynumber: 2.8 Consensus size: 18
100088 AGACACGATG
100098 AAGAAAAAAAATA-AAAAA
1 AAGAAAAAAAA-AGAAAAA
100116 AAGAAAGAAAAAAGAAAAA
1 AAGAAA-AAAAAAGAAAAA
100135 AAGAAAAAAAAAGA
1 AAGAAAAAAAAAGA
100149 TGAAAAGATG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.48
19 16 0.52
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (18 bp):
AAGAAAAAAAAAGAAAAA
Found at i:100162 original size:18 final size:18
Alignment explanation
Indices: 100098--100168 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
100088 AGACACGATG
*
100098 AAGAA-AAAAAATAAAAAA
1 AAGAAGAAAAAA-GAAAAA
100116 AAGAAAGAAAAAAGAAAAA
1 AAG-AAGAAAAAAGAAAAA
* **
100135 AAGAAAAAAAAAGATGAA
1 AAGAAGAAAAAAGAAAAA
*
100153 AAGATG-AAAAAGAAAA
1 AAGAAGAAAAAAGAAAA
100169 GGAGAGGTCG
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
17 8 0.19
18 19 0.44
19 10 0.23
20 6 0.14
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (18 bp):
AAGAAGAAAAAAGAAAAA
Found at i:101241 original size:50 final size:49
Alignment explanation
Indices: 101102--101241 Score: 136
Period size: 50 Copynumber: 2.8 Consensus size: 49
101092 CGGGACCATG
* * ** * * * *
101102 AAGATTTGAAGGGAAATATTGAGGCCGCAATGGCAAACCCGATACCTCAG
1 AAGATGTGATGGGAAAGGTTGAGGCCGTAA-GACAAACCTGATACCTCAA
* * * * *
101152 AAGATGTGATGGGAAAGGCTGAGACTGTAAAAGCGAACCTGATACCTCAA
1 AAGATGTGATGGGAAAGGTTGAGGCCGTAAGA-CAAACCTGATACCTCAA
101202 AAGATGTGATGGGAAAGGTTGAGGCCGTAACGACAAACCT
1 AAGATGTGATGGGAAAGGTTGAGGCCGTAA-GACAAACCT
101242 TGTACCATGA
Statistics
Matches: 70, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
50 69 0.99
51 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (49 bp):
AAGATGTGATGGGAAAGGTTGAGGCCGTAAGACAAACCTGATACCTCAA
Found at i:101336 original size:49 final size:49
Alignment explanation
Indices: 101096--101370 Score: 193
Period size: 49 Copynumber: 5.6 Consensus size: 49
101086 GAGTTGCGGG
** * *
101096 ACCATGAAGATTTGAAGGGAAATATTGAGGCCGCAATGGCAAACCC-GAT
1 ACCATGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCTG-T
* * * * * * **
101145 ACC-TCAGAAGATGTGATGGGAAAGGCTGAGACTGTAAAAGCGAA-CCTGAT
1 ACCAT--GAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCTG-T
* * * * * * *
101195 ACC-TCAAAAGATGTGATGGGAAAGGTTGAGGCCGTAACGACAAACCTTGT
1 ACCAT--GAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCTGT
* **
101245 ACCATGAAGATTTGAACGGAAAGGTTGAGGCCGCAATAGCGAACCCTGT
1 ACCATGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCTGT
* * *
101294 ACCATGAAGATTTGAAGGGAAAGGTT-AGGGCTGCAACGGCGAATCCAGT
1 ACCATGAAGATTTGAAGGGAAAGGTTGA-GGCCGCAACGGCGAACCCTGT
* * *
101343 ACCATG-ATATATAAAGGGAAAGGTTGAG
1 ACCATGAAGATTTGAAGGGAAAGGTTGAG
101371 ACCTTAACGG
Statistics
Matches: 180, Mismatches: 39, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
48 19 0.11
49 87 0.48
50 70 0.39
51 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (49 bp):
ACCATGAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGGCGAACCCTGT
Found at i:101883 original size:39 final size:38
Alignment explanation
Indices: 101751--102327 Score: 243
Period size: 39 Copynumber: 15.5 Consensus size: 38
101741 CAGCCATTTG
* * * *
101751 ATCTCTTACCCCTAGCCAGGGGCAGGTTACAGCCATCCA
1 ATCTCTTATCCCGAGCCTGGGGCAGATT-CAGCCATCCA
* *
101790 ATCTCTTATACCGAG-CTTGGGCAGA-TCA-CCATCAACCA
1 ATCTCTTATCCCGAGCCTGGGGCAGATTCAGCCAT---CCA
* * *
101828 ATCTTTTA-CCCTGAGCCTGGGGCAGATTGTAGCCATCCG
1 ATCTCTTATCCC-GAGCCTGGGGCAGATT-CAGCCATCCA
* *
101867 ATCTCTTATCCCGAGCCTAGGGTAGA-TCAG---T-CA
1 ATCTCTTATCCCGAGCCTGGGGCAGATTCAGCCATCCA
* * * * *
101900 ATCTCTTA-CCTCGAGCCTAGGGTAGATTGCAACCATTCG
1 ATCTCTTATCC-CGAGCCTGGGGCAGATT-CAGCCATCCA
* * ** *
101939 ATCTTTTACCCCGAGCCTAAGGCA-AATCAG---T-CA
1 ATCTCTTATCCCGAGCCTGGGGCAGATTCAGCCATCCA
* *
101972 ATCTCTTA-CATCGAGCCT-AGGCAGATTACAGCCATCCA
1 ATCTCTTATC-CCGAGCCTGGGGCAGATT-CAGCCATCCA
* * *
102010 ATCTCTAACCCCGAGCCTGGAGCAGA-TCA-CCATCAGCCA
1 ATCTCTTATCCCGAGCCTGGGGCAGATTCAGCCAT---CCA
* * * * **
102049 ATCTCTTACCCCGAGCTTGAGGCAGATTACAGTCATCTG
1 ATCTCTTATCCCGAGCCTGGGGCAGATT-CAGCCATCCA
* * * *
102088 ATCTCTTACCCCAAGCCTAGGGTAGA-TCA---A-CCA
1 ATCTCTTATCCCGAGCCTGGGGCAGATTCAGCCATCCA
* *
102121 ATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCAT-CA
1 ATCTCTTATCCCGAGCCTGGGGCAGATT-CAGCCATCCA
***
102159 GATCTCTTA-CCTCG-GCCCTAAAGCAGATT-AG----CCA
1 -ATCTCTTATCC-CGAG-CCTGGGGCAGATTCAGCCATCCA
* * *
102193 ATCTCTTACCCCGAGCCTAGGGCATATTACAGCCATCCA
1 ATCTCTTATCCCGAGCCTGGGGCAGATT-CAGCCATCCA
* *
102232 ATCTCTTA-CCTCGAGCTTGGGGCAAATT-A-CCATCAGCCA
1 ATCTCTTATCC-CGAGCCTGGGGCAGATTCAGCCAT---CCA
* * *
102271 ATCTCTTACCCCGAGCATGGGGCAGATTGTAGCCATCCA
1 ATCTCTTATCCCGAGCCTGGGGCAGATT-CAGCCATCCA
*
102310 ATCTCTTACCCCGAGCCT
1 ATCTCTTATCCCGAGCCT
102328 CAAGCAGATC
Statistics
Matches: 418, Mismatches: 62, Indels: 116
0.70 0.10 0.19
Matches are distributed among these distances:
32 8 0.02
33 84 0.20
34 13 0.03
35 10 0.02
36 10 0.02
37 15 0.04
38 50 0.12
39 204 0.49
40 9 0.02
41 4 0.01
42 11 0.03
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (38 bp):
ATCTCTTATCCCGAGCCTGGGGCAGATTCAGCCATCCA
Found at i:101915 original size:33 final size:33
Alignment explanation
Indices: 101867--101992 Score: 110
Period size: 33 Copynumber: 3.6 Consensus size: 33
101857 TAGCCATCCG
101867 ATCTCTTATCC-CGAGCCTAGGGTAGATCAGTCA
1 ATCTCTTA-CCTCGAGCCTAGGGTAGATCAGTCA
* *
101900 ATCTCTTACCTCGAGCCTAGGGTAGATTGCAACCATTCG
1 ATCTCTTACCTCGAGCCTAGGGTAGA-T-----CAGTCA
* * * * *
101939 ATCTTTTACCCCGAGCCTAAGGCAAATCAGTCA
1 ATCTCTTACCTCGAGCCTAGGGTAGATCAGTCA
*
101972 ATCTCTTACATCGAGCCTAGG
1 ATCTCTTACCTCGAGCCTAGG
101993 CAGATTACAG
Statistics
Matches: 73, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
32 2 0.03
33 44 0.60
34 1 0.01
38 1 0.01
39 25 0.34
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (33 bp):
ATCTCTTACCTCGAGCCTAGGGTAGATCAGTCA
Found at i:101941 original size:72 final size:72
Alignment explanation
Indices: 101820--102431 Score: 399
Period size: 72 Copynumber: 8.3 Consensus size: 72
101810 GCAGATCACC
* * * * * * *
101820 ATCAACCAATCTTTTACCCTGAGCCTGGGGCAGATTGTAGCCATCCGATCTCTTATCCCGAGCCT
1 ATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATTCGATCTCTTACCCCGAGCCT
101885 AGGGTAG
66 AGGGTAG
* * * * *
101892 ATCAGTCAATCTCTTACCTCGAGCCTAGGGTAGATTGCAACCATTCGATCTTTTACCCCGAGCCT
1 ATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATTCGATCTCTTACCCCGAGCCT
* * *
101957 AAGGCAA
66 AGGGTAG
* ** * * * *
101964 ATCAGTCAATCTCTTACATCGAGCCTA-GGCAGATTACAGCCATCCAATCTCTAACCCCGAGCCT
1 ATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATTCGATCTCTTACCCCGAGCCT
* *
102028 GGAGCAGATCACC
66 --AG--GGT-A-G
* * * *
102041 ATCAGCCAATCTCTTACCCCGAG-CTTGAGGCAGATTACAGTCA-TCTGATCTCTTACCCCAAGC
1 ATCAGCCAATCTCTTACCCCGAGCCTAG-GGCAGATTGCAGCCATTC-GATCTCTTACCCCGAGC
102104 CTAGGGTAG
64 CTAGGGTAG
* * * *
102113 ATCAACCAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCA-TCAGATCTCTTACCTCG-GCC
1 ATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATTC-GATCTCTTACCCCGAG-C
** *
102176 CTAAAGCAG
64 CTAGGGTAG
* * * * * * *
102185 ATTAGCCAATCTCTTACCCCGAGCCTAGGGCATATTACAGCCATCCAATCTCTTACCTCGAGCTT
1 ATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATTCGATCTCTTACCCCGAGCCT
* *
102250 GGGGCAAATTACC
66 AGGG-----TA-G
* * * * *
102263 ATCAGCCAATCTCTTACCCCGAGCATGGGGCAGATTGTAGCCATCCAATCTCTTACCCCGAGCCT
1 ATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATTCGATCTCTTACCCCGAGCCT
* *
102328 CAAGCAGATCACT
66 --AG--GGT-A-G
* * ** * * ** * * *
102341 ATCTGTCAATCTCTTACCTTGAGCTTAAGATAGGTTGCAGCTATCCGATCTCTTACCCCGAG-CT
1 ATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATTCGATCTCTTACCCCGAGCCT
* *
102405 TGGAGCAG
66 AGG-GTAG
102413 ATCAGCCAATCTCTTACCC
1 ATCAGCCAATCTCTTACCC
102432 TGACCCAGGG
Statistics
Matches: 421, Mismatches: 94, Indels: 50
0.75 0.17 0.09
Matches are distributed among these distances:
71 31 0.07
72 208 0.49
73 8 0.02
74 2 0.00
75 2 0.00
76 5 0.01
77 25 0.06
78 138 0.33
80 1 0.00
82 1 0.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (72 bp):
ATCAGCCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAGCCATTCGATCTCTTACCCCGAGCCT
AGGGTAG
Found at i:102075 original size:221 final size:221
Alignment explanation
Indices: 101751--102327 Score: 730
Period size: 221 Copynumber: 2.6 Consensus size: 221
101741 CAGCCATTTG
* * * **
101751 ATCTCTTACCCCTAGCC-AGGGGCAGGTTACAGCCATCCAATCTCTTATACCGAGCTTGGGCAGA
1 ATCTCTTACACCGAGCCTA-GGGCAGATTACAGCCATCCAATCTCTTACCCCGAGCTTGGGCAGA
* * * * *
101815 TCACCATCAACCAATCTTTTACCCTGAGCCTGGGGCAGATTGTAGCCATCCGATCTCTTATCCCG
65 TCACCATCAGCCAATCTCTTACCCCGAGCATGGGGCAGATTGTAGCCATCCGATCTCTTACCCCG
** * * *
101880 AGCCTAGGGTAGATCAGTCAATCTCTTACCTCGAGCCTAGGGTAGATTGCAACCATTC-GATCTT
130 AGCCTAGGGTAGATCAACCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCA-TCAGATCTC
* *
101944 TTACCCCGAG-CCTAAGGCAAATCAGTCA
194 TTACCCCG-GCCCTAAAGCAAATCAGCCA
* * *
101972 ATCTCTTACATCGAGCCTA-GGCAGATTACAGCCATCCAATCTCTAACCCCGAGCCTGGAGCAGA
1 ATCTCTTACACCGAGCCTAGGGCAGATTACAGCCATCCAATCTCTTACCCCGAGCTTGG-GCAGA
* * ** * * *
102036 TCACCATCAGCCAATCTCTTACCCCGAGCTTGAGGCAGATTACAGTCATCTGATCTCTTACCCCA
65 TCACCATCAGCCAATCTCTTACCCCGAGCATGGGGCAGATTGTAGCCATCCGATCTCTTACCCCG
* * *
102101 AGCCTAGGGTAGATCAACCAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCATCAGATCTCT
130 AGCCTAGGGTAGATCAACCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCAGATCTCT
* * *
102166 TACCTCGGCCCTAAAGCAGATTAGCCA
195 TACCCCGGCCCTAAAGCAAATCAGCCA
* * * *
102193 ATCTCTTACCCCGAGCCTAGGGCATATTACAGCCATCCAATCTCTTACCTCGAGCTTGGGGCAAA
1 ATCTCTTACACCGAGCCTAGGGCAGATTACAGCCATCCAATCTCTTACCCCGAGCTT-GGGCAGA
* *
102258 TTACCATCAGCCAATCTCTTACCCCGAGCATGGGGCAGATTGTAGCCATCCAATCTCTTACCCCG
65 TCACCATCAGCCAATCTCTTACCCCGAGCATGGGGCAGATTGTAGCCATCCGATCTCTTACCCCG
102323 AGCCT
130 AGCCT
102328 CAAGCAGATC
Statistics
Matches: 302, Mismatches: 48, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
220 37 0.12
221 164 0.54
222 99 0.33
223 2 0.01
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (221 bp):
ATCTCTTACACCGAGCCTAGGGCAGATTACAGCCATCCAATCTCTTACCCCGAGCTTGGGCAGAT
CACCATCAGCCAATCTCTTACCCCGAGCATGGGGCAGATTGTAGCCATCCGATCTCTTACCCCGA
GCCTAGGGTAGATCAACCAATCTCTTACCCCGAGCCTAGGGCAGATTGCAACCATCAGATCTCTT
ACCCCGGCCCTAAAGCAAATCAGCCA
Found at i:102099 original size:78 final size:78
Alignment explanation
Indices: 101964--102416 Score: 382
Period size: 78 Copynumber: 6.0 Consensus size: 78
101954 CCTAAGGCAA
* ** * *
101964 ATCAGTCAATCTCTTACATCGAGCCT-AGGCAGATTACAGCCATCCAATCTCTAACCCCGAGCCT
1 ATCAGCCAATCTCTTACCCCGAGCTTGAGGCAGATTACAGCCATCCAATCTCTTACCCCGAGCCT
102028 GGAGCAGATCACC
66 GGAGCAGATCACC
* ** *
102041 ATCAGCCAATCTCTTACCCCGAGCTTGAGGCAGATTACAGTCATCTGATCTCTTACCCCAAGCCT
1 ATCAGCCAATCTCTTACCCCGAGCTTGAGGCAGATTACAGCCATCCAATCTCTTACCCCGAGCCT
*
102106 AGG-GTAGAT---C
66 -GGAGCAGATCACC
* * *
102116 A--A-CCAATCTCTTACCCCGAGCTTGGGGCAGATTGCAGCCAT-CAGATCTCTTACCTCG-GCC
1 ATCAGCCAATCTCTTACCCCGAGCTTGAGGCAGATTACAGCCATCCA-ATCTCTTACCCCGAG-C
**
102176 CTAAAGCAGAT----
64 CTGGAGCAGATCACC
* * * *
102187 -T-AGCCAATCTCTTACCCCGAGCCT-AGGGCATATTACAGCCATCCAATCTCTTACCTCGAGCT
1 ATCAGCCAATCTCTTACCCCGAGCTTGA-GGCAGATTACAGCCATCCAATCTCTTACCCCGAGCC
* * *
102249 TGGGGCAAATTACC
65 TGGAGCAGATCACC
* * **
102263 ATCAGCCAATCTCTTACCCCGAGCATGGGGCAGATTGTAGCCATCCAATCTCTTACCCCGAGCCT
1 ATCAGCCAATCTCTTACCCCGAGCTTGAGGCAGATTACAGCCATCCAATCTCTTACCCCGAGCCT
** *
102328 CAAGCAGATCACT
66 GGAGCAGATCACC
* * ** * ** * * * * *
102341 ATCTGTCAATCTCTTACCTTGAGCTTAAGATAGGTTGCAGCTATCCGATCTCTTACCCCGAGCTT
1 ATCAGCCAATCTCTTACCCCGAGCTTGAGGCAGATTACAGCCATCCAATCTCTTACCCCGAGCCT
102406 GGAGCAGATCA
66 GGAGCAGATCA
102417 GCCAATCTCT
Statistics
Matches: 301, Mismatches: 58, Indels: 33
0.77 0.15 0.08
Matches are distributed among these distances:
71 2 0.01
72 109 0.36
73 4 0.01
75 2 0.01
77 23 0.08
78 159 0.53
79 2 0.01
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (78 bp):
ATCAGCCAATCTCTTACCCCGAGCTTGAGGCAGATTACAGCCATCCAATCTCTTACCCCGAGCCT
GGAGCAGATCACC
Found at i:102953 original size:205 final size:208
Alignment explanation
Indices: 102575--103114 Score: 658
Period size: 205 Copynumber: 2.6 Consensus size: 208
102565 GGGGAAAAGT
* * * * *
102575 AAAACTT-AAAACCTATCTTCCTAATAAGATACTGAGAAGTAGGTTGAAGTAATAAAACGGCCGT
1 AAAACTTCCAAACC-ATCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGTAATAAAACGGTCGT
* * *
102639 CTTCCTGATGAGATACTGAGAAGTAGACCAAATCTGTCTTCTTGATGAGATACAGAGAAGTGGAT
65 CTTCCTGATGAGATACAGAGAAGTAGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGAT
* * * * *
102704 TAAAACAAGTGATGCGATCATCTTCTTGATGAGATACAGAGAAGTATACCAAATCAATGAAACAA
130 TAAAACAAATGAGGCGATCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAACGAAACAA
102769 ACCCCAATGCAAGC
195 ACCCCAATGCAAGC
* * *
102783 AAAACTT-CAAA-C-TCTTCTTGATGAGATACTGAGAAGCAGGTCGAAGTAATAAAACGATCGTC
1 AAAACTTCCAAACCATCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGTAATAAAACGGTCGTC
* * * * *
102845 TTCCTAATGAGATACAAAGAAGTGGACAAAATCCGTCTTCCTGATGAGATATAGAGAAGTGGATT
66 TTCCTGATGAGATACAGAGAAGTAGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATT
* * ***
102910 AAAACAAATGAGGC-AGTCATCTTCCTGATGAGATACAGAGAAGTAGATCAATTCAACGAAGTGA
131 AAAACAAATGAGGCGA-TCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAACGAAACAA
* * ** *
102974 AGCTCAATGTGAGT
195 ACCCCAATGCAAGC
* * * * * *
102988 GAAACTTCCAAACCCCATCTTCCTGATGAGATACTGAGAAGTGGGTCAAAGCAATAAAGCGGTCA
1 AAAACTTCCAAA--CCATCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGTAATAAAACGGTCG
* *
103053 TCTTCCTGATTAGAAACAGAGAAGTAGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGT
64 TCTTCCTGATGAGATACAGAGAAGTAGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGT
103115 AGACCAAATT
Statistics
Matches: 279, Mismatches: 47, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
204 1 0.00
205 167 0.60
206 4 0.01
207 1 0.00
208 10 0.04
209 1 0.00
210 95 0.34
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.24
Consensus pattern (208 bp):
AAAACTTCCAAACCATCTTCCTGATGAGATACTGAGAAGTAGGTCGAAGTAATAAAACGGTCGTC
TTCCTGATGAGATACAGAGAAGTAGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGTGGATT
AAAACAAATGAGGCGATCATCTTCCTGATGAGATACAGAGAAGTAGACCAAATCAACGAAACAAA
CCCCAATGCAAGC
Found at i:103109 original size:37 final size:37
Alignment explanation
Indices: 103053--103123 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
103043 AAAGCGGTCA
*
103053 TCTTCCTGATTAGAAACAGAGAAGTAGACCAAATCCG
1 TCTTCCTGATGAGAAACAGAGAAGTAGACCAAATCCG
*
103090 TCTTCCTGATGAGATACAGAGAAGTAGACCAAAT
1 TCTTCCTGATGAGAAACAGAGAAGTAGACCAAAT
103124 TGATGAAGCG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (37 bp):
TCTTCCTGATGAGAAACAGAGAAGTAGACCAAATCCG
Found at i:103113 original size:161 final size:161
Alignment explanation
Indices: 102929--103275 Score: 581
Period size: 161 Copynumber: 2.2 Consensus size: 161
102919 GAGGCAGTCA
* *
102929 TCTTCCTGATGAGATACAGAGAAGTAGATC-AATTCAACGAAGTGAAGCTCAATGTGAGTGAAAC
1 TCTTCCTGATGAGATACAGAGAAGTAGACCAAATT-AACGAAGCGAAGCTCAATGTGAGTGAAAC
102993 TTCCAAACC-CCATCTTCCTGATGAGATACTGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTT
65 TT-CAAACCTCCATCTTCCTGATGAGATACTGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTT
*
103057 CCTGATTAGAAACAGAGAAGTAGACCAAATCCG
129 CCTGATGAGAAACAGAGAAGTAGACCAAATCCG
* *
103090 TCTTCCTGATGAGATACAGAGAAGTAGACCAAATTGATGAAGCGAAGCTCAATGTGAGTGAAACT
1 TCTTCCTGATGAGATACAGAGAAGTAGACCAAATTAACGAAGCGAAGCTCAATGTGAGTGAAACT
*
103155 TCGAACCTCCATCTTCCTGATGAGATACTGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCC
66 TCAAACCTCCATCTTCCTGATGAGATACTGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCC
* * *
103220 TGATGAGATACAGAGAAGTGGGCCAAATCCG
131 TGATGAGAAACAGAGAAGTAGACCAAATCCG
103251 TCTTCCTGATGAGATACAGAGAAGT
1 TCTTCCTGATGAGATACAGAGAAGT
103276 GGATTGAAAC
Statistics
Matches: 175, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
160 5 0.03
161 166 0.95
162 4 0.02
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (161 bp):
TCTTCCTGATGAGATACAGAGAAGTAGACCAAATTAACGAAGCGAAGCTCAATGTGAGTGAAACT
TCAAACCTCCATCTTCCTGATGAGATACTGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCC
TGATGAGAAACAGAGAAGTAGACCAAATCCG
Found at i:103320 original size:86 final size:85
Alignment explanation
Indices: 103166--103334 Score: 241
Period size: 86 Copynumber: 2.0 Consensus size: 85
103156 CGAACCTCCA
*
103166 TCTTCCTGATGAGATACTGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATAC
1 TCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATAC
* *
103231 AGAGAAGTGGGCCAAATCCG
66 AGAGAAGTAGACCAAATCCG
* * * * *
103251 TCTTCCTGATGAGATACAGAGAAGTGGATTGAAA-CAAATGAGGTGGTCATCTTCCTGATGAGAT
1 TCTTCCTGATGAGATACAGAGAAGTGG-GTCAAAGC-AATAAAGCGGTCATCTTCCTGATGAGAT
103315 ACAGAGAAGTAGACCAAATC
64 ACAGAGAAGTAGACCAAATC
103335 AAATGAAGCA
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
85 27 0.36
86 47 0.64
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (85 bp):
TCTTCCTGATGAGATACAGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATAC
AGAGAAGTAGACCAAATCCG
Found at i:104328 original size:6 final size:6
Alignment explanation
Indices: 104319--104366 Score: 87
Period size: 6 Copynumber: 8.0 Consensus size: 6
104309 AAAGAGAAAA
*
104319 GGGTTT GGGTTT GGGTTT GGGTTT AGGTTT GGGTTT GGGTTT GGGTTT
1 GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT
104367 ACCTTGTGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.02, C:0.00, G:0.48, T:0.50
Consensus pattern (6 bp):
GGGTTT
Found at i:104352 original size:24 final size:24
Alignment explanation
Indices: 104320--104367 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
104310 AAGAGAAAAG
104320 GGTTTGGGTTTGGGTTTGGGTTTA
1 GGTTTGGGTTTGGGTTTGGGTTTA
104344 GGTTTGGGTTTGGGTTTGGGTTTA
1 GGTTTGGGTTTGGGTTTGGGTTTA
104368 CCTTGTGTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.04, C:0.00, G:0.46, T:0.50
Consensus pattern (24 bp):
GGTTTGGGTTTGGGTTTGGGTTTA
Found at i:105280 original size:30 final size:30
Alignment explanation
Indices: 105246--105733 Score: 395
Period size: 30 Copynumber: 16.6 Consensus size: 30
105236 ATTTTCTTTA
* *
105246 AAAATTCCATTTTTACCATTAAACTTTTCC
1 AAAATTACATTTTTACCCTTAAACTTTTCC
* *
105276 AAAATTACATTTTAACCCCTAAACTTTTCC
1 AAAATTACATTTTTACCCTTAAACTTTTCC
* * *
105306 AAAATTAAATTTTAACCCCTAAACTTTTCC
1 AAAATTACATTTTTACCCTTAAACTTTTCC
* * *
105336 ATAATTGA-ATTTTAACCCTTAAAGTTTT-C
1 AAAATT-ACATTTTTACCCTTAAACTTTTCC
* *
105365 AAAATTACATTTTTACCCTTAAACTTCTCA
1 AAAATTACATTTTTACCCTTAAACTTTTCC
*
105395 AAAATTAC-TTTTTACCCTTAAAC-TTTCA
1 AAAATTACATTTTTACCCTTAAACTTTTCC
* * *
105423 AAAATCACATTTTTTACCCCTAAACTTTTCA
1 AAAATTACA-TTTTTACCCTTAAACTTTTCC
**
105454 AAAATTACATTTTTACCCTCGAAC--TTCC
1 AAAATTACATTTTTACCCTTAAACTTTTCC
* * * *
105482 AAAAATCACATTTTAACCCTCAAACTTCT-C
1 -AAAATTACATTTTTACCCTTAAACTTTTCC
* ** *
105512 AAAATTTACATTTTTTCCCTCGAAC-TTTCA
1 AAAA-TTACATTTTTACCCTTAAACTTTTCC
* *
105542 AAAATCACATTTTTACGCC--AAACTTCT-C
1 AAAATTACATTTTTAC-CCTTAAACTTTTCC
* *
105570 AAAATTTACATTTTTTCCATTAAAC--TTCC
1 AAAA-TTACATTTTTACCCTTAAACTTTTCC
* * *
105599 AAAAATCACATTTTTAAACC-TAAA-TTTCTCA
1 -AAAATTACATTTTT-ACCCTTAAACTTT-TCC
* * * *
105630 AAAATTACATTTTTGCCCCTGAACTTTT-A
1 AAAATTACATTTTTACCCTTAAACTTTTCC
* *
105659 AAAATCACA-TTTTAACC-TAAACTTTTCC
1 AAAATTACATTTTTACCCTTAAACTTTTCC
*
105687 AAAATTACA-TTTTACCCCTAAAC-TTTCC
1 AAAATTACATTTTTACCCTTAAACTTTTCC
105715 AAAATTACATTTTTACCCT
1 AAAATTACATTTTTACCCT
105734 GAACTCTCCT
Statistics
Matches: 374, Mismatches: 57, Indels: 55
0.77 0.12 0.11
Matches are distributed among these distances:
27 8 0.02
28 59 0.16
29 125 0.33
30 162 0.43
31 20 0.05
ACGTcount: A:0.36, C:0.24, G:0.01, T:0.39
Consensus pattern (30 bp):
AAAATTACATTTTTACCCTTAAACTTTTCC
Found at i:105408 original size:59 final size:59
Alignment explanation
Indices: 105241--105733 Score: 459
Period size: 59 Copynumber: 8.4 Consensus size: 59
105231 CCCCTATTTT
* * * * *
105241 CTTT-AAAAATTC-CATTTTTACCATTAAACTTTTCCAAAATTACATTTTAACCCCTAAA
1 CTTTCAAAAA-TCACATTTTTACCCTTAAACTTCTCAAAAATTACATTTTTACCCTTAAA
* * * * * * * * *
105299 CTTTTCCAAAATTAAATTTTAACCCCTAAACTTTTCCATAATTGA-ATTTTAACCCTTAAA
1 C-TTTCAAAAATCACATTTTTACCCTTAAACTTCTCAAAAATT-ACATTTTTACCCTTAAA
* *
105359 GTTTTC-AAAATTACATTTTTACCCTTAAACTTCTCAAAAATTAC-TTTTTACCCTTAAA
1 -CTTTCAAAAATCACATTTTTACCCTTAAACTTCTCAAAAATTACATTTTTACCCTTAAA
* * **
105417 CTTTCAAAAATCACATTTTTTACCCCTAAACTTTTCAAAAATTACATTTTTACCCTCGAA
1 CTTTCAAAAATCACA-TTTTTACCCTTAAACTTCTCAAAAATTACATTTTTACCCTTAAA
* * * * * **
105477 CTTCCAAAAATCACATTTTAACCCTCAAACTTCTCAAAATTTACATTTTTTCCCTCGAA
1 CTTTCAAAAATCACATTTTTACCCTTAAACTTCTCAAAAATTACATTTTTACCCTTAAA
* * *
105536 CTTTCAAAAATCACATTTTTACGCC--AAACTTCTCAAAATTTACATTTTTTCCATTAAA
1 CTTTCAAAAATCACATTTTTAC-CCTTAAACTTCTCAAAAATTACATTTTTACCCTTAAA
* * * * * *
105594 CTTCCAAAAATCACATTTTTAAACC-TAAATTTCTCAAAAATTACATTTTTGCCCCTGAA
1 CTTTCAAAAATCACATTTTT-ACCCTTAAACTTCTCAAAAATTACATTTTTACCCTTAAA
* * * * *
105653 CTTTTAAAAATCACA-TTTTAACC-TAAACTTTTCCAAAATTACA-TTTTACCCCTAAA
1 CTTTCAAAAATCACATTTTTACCCTTAAACTTCTCAAAAATTACATTTTTACCCTTAAA
* *
105709 CTTTCCAAAATTACATTTTTACCCT
1 CTTTCAAAAATCACATTTTTACCCT
105734 GAACTCTCCT
Statistics
Matches: 368, Mismatches: 53, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
56 23 0.06
57 32 0.09
58 78 0.21
59 160 0.43
60 74 0.20
61 1 0.00
ACGTcount: A:0.36, C:0.24, G:0.01, T:0.39
Consensus pattern (59 bp):
CTTTCAAAAATCACATTTTTACCCTTAAACTTCTCAAAAATTACATTTTTACCCTTAAA
Found at i:105596 original size:117 final size:114
Alignment explanation
Indices: 105265--105738 Score: 431
Period size: 117 Copynumber: 4.1 Consensus size: 114
105255 TTTTTACCAT
* * * * * * * *
105265 TAAACTTTTCCAAAATTACATTTTAACCC-CTAAACTTTTCCAAAATTAAATTTTAACCCCTAAA
1 TAAACTTCTCAAAAATTACATTTTTACCCTC-GAAC-TTTCAAAAATCACATTTTTA-CCC-AAA
* * * * * *
105329 CTTTTCCATAATTGA-ATTTTAACCCTTAAAGTTTTC-AAAATTACATTTTTACCC
62 CTTTT-CAAAATT-ACATTTTTACCCTTAAA-CTTCCAAAAATCACATTTTAACCC
**
105383 TTAAACTTCTCAAAAATTAC-TTTTTACCCTTAAACTTTCAAAAATCACATTTTTTACCCCTAAA
1 -TAAACTTCTCAAAAATTACATTTTTACCCTCGAACTTTCAAAAATCACA-TTTTTA-CCC-AAA
**
105447 CTTTTCAAAAATTACATTTTTACCCTCGAACTTCCAAAAATCACATTTTAACCC
62 CTTTTC-AAAATTACATTTTTACCCTTAAACTTCCAAAAATCACATTTTAACCC
* *
105501 TCAAACTTCTCAAAATTTACATTTTTTCCCTCGAACTTTCAAAAATCACATTTTTACGCCAAACT
1 T-AAACTTCTCAAAAATTACATTTTTACCCTCGAACTTTCAAAAATCACATTTTTAC-CCAAACT
* * * *
105566 TCTCAAAATTTACATTTTTTCCATTAAACTTCCAAAAATCACATTTTTAAACC
64 TTTCAAAA-TTACATTTTTACCCTTAAACTTCCAAAAATCACA-TTTTAACCC
* * * * *
105619 TAAATTTCTCAAAAATTACATTTTTGCCC-CTGAACTTTTAAAAATCACATTTTAACCTAAACTT
1 TAAACTTCTCAAAAATTACATTTTTACCCTC-GAACTTTCAAAAATCACATTTTTACCCAAACTT
* * *
105683 TTCCAAAATTACA-TTTTACCCCTAAACTTTCC-AAAATTACATTTTTACCC
65 TT-CAAAATTACATTTTTACCCTTAAAC-TTCCAAAAATCACATTTTAACCC
*
105733 TGAACT
1 TAAACT
105739 CTCCTGAACA
Statistics
Matches: 301, Mismatches: 41, Indels: 31
0.81 0.11 0.08
Matches are distributed among these distances:
114 11 0.04
115 19 0.06
116 22 0.07
117 109 0.36
118 97 0.32
119 43 0.14
ACGTcount: A:0.36, C:0.24, G:0.02, T:0.38
Consensus pattern (114 bp):
TAAACTTCTCAAAAATTACATTTTTACCCTCGAACTTTCAAAAATCACATTTTTACCCAAACTTT
TCAAAATTACATTTTTACCCTTAAACTTCCAAAAATCACATTTTAACCC
Found at i:105912 original size:16 final size:15
Alignment explanation
Indices: 105863--105920 Score: 59
Period size: 14 Copynumber: 4.0 Consensus size: 15
105853 TTGATTCATG
105863 ATTCGTAT-TTTATT
1 ATTCGTATATTTATT
* *
105877 TTTCTTATA-TTATT
1 ATTCGTATATTTATT
105891 -TTCGTATATTTATT
1 ATTCGTATATTTATT
*
105905 CATTCGTATAATTATT
1 -ATTCGTATATTTATT
105921 CATGCTTTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
13 7 0.19
14 16 0.44
16 13 0.36
ACGTcount: A:0.24, C:0.09, G:0.05, T:0.62
Consensus pattern (15 bp):
ATTCGTATATTTATT
Found at i:105921 original size:16 final size:16
Alignment explanation
Indices: 105891--105923 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
105881 TTATATTATT
*
105891 TTCGTATATTTATTCA
1 TTCGTATAATTATTCA
105907 TTCGTATAATTATTCA
1 TTCGTATAATTATTCA
105923 T
1 T
105924 GCTTTGTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (16 bp):
TTCGTATAATTATTCA
Found at i:131997 original size:17 final size:17
Alignment explanation
Indices: 131975--132007 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
131965 ACTAACACTA
131975 AAATGCAATGACAATGG
1 AAATGCAATGACAATGG
131992 AAATGCAATGACAATG
1 AAATGCAATGACAATG
132008 TTTACTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.21, T:0.18
Consensus pattern (17 bp):
AAATGCAATGACAATGG
Done.