Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011790.1 Kokia drynarioides strain JFW-HI SEQ_126785, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 117673
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:10671 original size:13 final size:14
Alignment explanation
Indices: 10642--10671 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
10632 TTCAATACAT
10642 TGACATTTAACCTC
1 TGACATTTAACCTC
10656 TGACATTTAA-CTC
1 TGACATTTAACCTC
10669 TGA
1 TGA
10672 TTGCATTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:17825 original size:52 final size:52
Alignment explanation
Indices: 17741--17925 Score: 210
Period size: 52 Copynumber: 3.6 Consensus size: 52
17731 TAAATGAAAT
* *
17741 AGGTCTGATGACTATGTGACATCGTGAGTATATGAATCCTTTACAGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACAGATTATG
* * * ** *
17793 ATGTCCGATGACTATTTGTCATCGTGAATATATGAATCCTTTATGGATTATT
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACAGATTATG
* * * * *
17845 AGGTTCGATGACTATGTGTCATTGTGAGTATATGAATTCTTAACGGATTA-G
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACAGATTATG
* * * *
17896 AGGCCCGATAACTCTGTGTCATCATGAGTA
1 AGGTCCGATGACTATGTGTCATCGTGAGTA
17926 ACAAATACGC
Statistics
Matches: 110, Mismatches: 23, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
51 24 0.22
52 86 0.78
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACAGATTATG
Found at i:18468 original size:39 final size:39
Alignment explanation
Indices: 18414--18492 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
18404 GGTTGTTCTC
*
18414 TGACTTGGGTTGTATCGGTAGTTGAATAGCAAGTATCGA
1 TGACTTGGGTTGTATCGGTAATTGAATAGCAAGTATCGA
*
18453 TGACTTGGGTTGTATCGGTAATTGGATAGCAAGTATCGA
1 TGACTTGGGTTGTATCGGTAATTGAATAGCAAGTATCGA
18492 T
1 T
18493 AGTTATGCGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.25, C:0.10, G:0.30, T:0.34
Consensus pattern (39 bp):
TGACTTGGGTTGTATCGGTAATTGAATAGCAAGTATCGA
Found at i:25411 original size:21 final size:21
Alignment explanation
Indices: 25387--25444 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
25377 CCTGTGTTAG
*
25387 TTCTACCGATACAAGTAAGAT
1 TTCTATCGATACAAGTAAGAT
* *
25408 TTCTATTGATAGAAGTAAGAT
1 TTCTATCGATACAAGTAAGAT
25429 TTCTATCGATACAAGT
1 TTCTATCGATACAAGT
25445 CATGCAACTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (21 bp):
TTCTATCGATACAAGTAAGAT
Found at i:37302 original size:12 final size:12
Alignment explanation
Indices: 37275--37315 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
37265 AAACAATTCA
*
37275 TTCTCTCT-TCT
1 TTCTCTCTATTT
37286 TTCTCTCTATTT
1 TTCTCTCTATTT
*
37298 TTCTCTCTAGTT
1 TTCTCTCTATTT
37310 TTCTCT
1 TTCTCT
37316 TTAGCCTTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 8 0.30
12 19 0.70
ACGTcount: A:0.05, C:0.29, G:0.02, T:0.63
Consensus pattern (12 bp):
TTCTCTCTATTT
Found at i:47304 original size:24 final size:25
Alignment explanation
Indices: 47264--47310 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
47254 GGGTAGATCT
47264 AATATCAATAAGTGT-AAAGTACGA
1 AATATCAATAAGTGTAAAAGTACGA
*
47288 AATATCATTAA-TGGTAAAAGTAC
1 AATATCAATAAGT-GTAAAAGTAC
47311 CTACTATCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 1 0.05
24 12 0.60
25 7 0.35
ACGTcount: A:0.49, C:0.09, G:0.15, T:0.28
Consensus pattern (25 bp):
AATATCAATAAGTGTAAAAGTACGA
Found at i:49132 original size:43 final size:43
Alignment explanation
Indices: 49077--49285 Score: 267
Period size: 43 Copynumber: 4.9 Consensus size: 43
49067 GACAATGAGA
* * * *
49077 GGAACATTGTTTCCTAATATTGATAGTATGTGATTAAATGAAT
1 GGAACAATGTTTCCTAATATTGAAAATATGTGATTGAATGAAT
* * *
49120 GCAACACTGTTTCCTAATATTGAAAATTTGTGATTGAATGAAT
1 GGAACAATGTTTCCTAATATTGAAAATATGTGATTGAATGAAT
* * * *
49163 GGAACACTATTTCCTAATATTGAAAATATCTGATCGAATGAAT
1 GGAACAATGTTTCCTAATATTGAAAATATGTGATTGAATGAAT
* *
49206 GGAACAATGTTTCCTAATATTGAAAGA-AAGTGATCGAATGAAT
1 GGAACAATGTTTCCTAATATTGAAA-ATATGTGATTGAATGAAT
* *
49249 GAAACAATGTTTCCTAATATTGATAATATGTGATTGA
1 GGAACAATGTTTCCTAATATTGAAAATATGTGATTGA
49286 CCGAGAGCAA
Statistics
Matches: 145, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
42 1 0.01
43 143 0.99
44 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (43 bp):
GGAACAATGTTTCCTAATATTGAAAATATGTGATTGAATGAAT
Found at i:50051 original size:2 final size:2
Alignment explanation
Indices: 50046--50081 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
50036 GTTATATATA
50046 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
50082 AATTGAATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:52457 original size:18 final size:18
Alignment explanation
Indices: 52422--52457 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
52412 ATGAGCATGT
*
52422 CAATGCACATTTTGAAAA
1 CAATGCACATTTTAAAAA
52440 CAATGCACATTTTAAAAA
1 CAATGCACATTTTAAAAA
52458 TGTACCTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28
Consensus pattern (18 bp):
CAATGCACATTTTAAAAA
Found at i:54390 original size:46 final size:46
Alignment explanation
Indices: 54323--54412 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
54313 ACTATTTCAA
54323 ACACCATTGAAAAATGACTGTTACACTTAGGCATATAGAAATGCAG
1 ACACCATTGAAAAATGACTGTTACACTTAGGCATATAGAAATGCAG
54369 ACACCATTGAAAAATGACTGTTACACTTAGGCATATAGAAATGC
1 ACACCATTGAAAAATGACTGTTACACTTAGGCATATAGAAATGC
54413 TCATATAATC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (46 bp):
ACACCATTGAAAAATGACTGTTACACTTAGGCATATAGAAATGCAG
Found at i:63271 original size:37 final size:38
Alignment explanation
Indices: 63195--63273 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 38
63185 CAAAATAACA
* * * *
63195 TCCAAATTTGCACCTAAAACTGTCGCCGCATGAGCATT
1 TCCAAATTTGCAACTAAAACTGTCGCCACAGGAACATT
* *
63233 TCCAAA-TTGCAACTAAAACTGTCGTCACAGGAATATT
1 TCCAAATTTGCAACTAAAACTGTCGCCACAGGAACATT
63270 TCCA
1 TCCA
63274 GAATGCACCC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
37 29 0.83
38 6 0.17
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.27
Consensus pattern (38 bp):
TCCAAATTTGCAACTAAAACTGTCGCCACAGGAACATT
Found at i:63394 original size:25 final size:26
Alignment explanation
Indices: 63364--63416 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 26
63354 CACTCAGGAA
63364 TGTCGCTGCATGAACATGT-TAGAAT
1 TGTCGCTGCATGAACATGTCTAGAAT
*
63389 TGTCGCTGCATGAACGTGTCTAGAAT
1 TGTCGCTGCATGAACATGTCTAGAAT
63415 TG
1 TG
63417 CACCCAGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
TGTCGCTGCATGAACATGTCTAGAAT
Found at i:65837 original size:37 final size:37
Alignment explanation
Indices: 65759--65841 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
65749 CATCCAAATT
** * * * *
65759 TGCACCCAAAACTGTCGCCTTATGAGCATTTTCAGAT
1 TGCACCCAAAACTGTCGCCGCAAGAACATTTCCAGAA
*
65796 TGCACCCAAAACTGTCGCCGCAAGAATATTTCCAGAA
1 TGCACCCAAAACTGTCGCCGCAAGAACATTTCCAGAA
65833 TGCACCCAA
1 TGCACCCAA
65842 GACTATCACT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (37 bp):
TGCACCCAAAACTGTCGCCGCAAGAACATTTCCAGAA
Found at i:65893 original size:38 final size:37
Alignment explanation
Indices: 65833--65930 Score: 117
Period size: 38 Copynumber: 2.6 Consensus size: 37
65823 ATTTCCAGAA
* * *
65833 TGCACCCAAGACTATCACTGCATAAATATTCTTCAAAT
1 TGCACCCAGGAATATCGCTGCATAAATATTCTTC-AAT
* *
65871 TGCATCCA-GAATTATCGCTGCATAAGTATTCTTCAAT
1 TGCACCCAGGAA-TATCGCTGCATAAATATTCTTCAAT
*
65908 TGCACCCAGGAATGTCGCTGCAT
1 TGCACCCAGGAATATCGCTGCAT
65931 GAACATGTAC
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
37 22 0.42
38 30 0.58
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.30
Consensus pattern (37 bp):
TGCACCCAGGAATATCGCTGCATAAATATTCTTCAAT
Found at i:65954 original size:26 final size:26
Alignment explanation
Indices: 65920--65973 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
65910 CACCCAGGAA
*
65920 TGTCGCTGCATGAACATGTAC-AGAAT
1 TGTCACTGCATGAACATGT-CTAGAAT
*
65946 TGTCACTGCATGAACGTGTCTAGAAT
1 TGTCACTGCATGAACATGTCTAGAAT
65972 TG
1 TG
65974 AGCCTAGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (26 bp):
TGTCACTGCATGAACATGTCTAGAAT
Found at i:69699 original size:21 final size:22
Alignment explanation
Indices: 69673--69715 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
69663 AACTAAGTAT
*
69673 AAATAGGTTGATTAAGG-TTAA
1 AAATAGGTTAATTAAGGCTTAA
69694 AAATAGGTTAATTAAGGCTTAA
1 AAATAGGTTAATTAAGGCTTAA
69716 CGATGAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.44, C:0.02, G:0.21, T:0.33
Consensus pattern (22 bp):
AAATAGGTTAATTAAGGCTTAA
Found at i:71574 original size:21 final size:21
Alignment explanation
Indices: 71530--71608 Score: 72
Period size: 21 Copynumber: 3.8 Consensus size: 21
71520 TGTTACACTT
71530 GTATCGGTAGAA--CTATCACAA
1 GTATCGGTAGAAGTCTAT--CAA
*
71551 GTATCGGTAGAAGTCTATCTA
1 GTATCGGTAGAAGTCTATCAA
* *** *
71572 GTACCGGTACTTGTCCATCAA
1 GTATCGGTAGAAGTCTATCAA
71593 GTATCGGTAGAAGTCT
1 GTATCGGTAGAAGTCT
71609 CCAAAAATCT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
21 40 0.91
23 4 0.09
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (21 bp):
GTATCGGTAGAAGTCTATCAA
Found at i:74807 original size:36 final size:36
Alignment explanation
Indices: 74757--75008 Score: 288
Period size: 36 Copynumber: 6.9 Consensus size: 36
74747 GTGAAAGTAG
* *
74757 ATATGTAGGTATGTTATTCATGCTATGTGACAATAA
1 ATATGTGGGTATGTTATTCATGCCATGTGACAATAA
* * * * * *
74793 ATACGTGGGAATGTTATTTATTCATGCCTTGAGATAGTAA
1 ATATGTGGGTATG----TTATTCATGCCATGTGACAATAA
* * * *
74833 ATGTGTGTGTATGTTATTCATGCTATGTGACAGTAA
1 ATATGTGGGTATGTTATTCATGCCATGTGACAATAA
* *
74869 ATATGTGAGTATGTTATTCATGCCATGAGACAATAA
1 ATATGTGGGTATGTTATTCATGCCATGTGACAATAA
* * * *
74905 ATATGTGTGTATCTTATTCATTCCATGTGGCAATAA
1 ATATGTGGGTATGTTATTCATGCCATGTGACAATAA
*
74941 ATATGTGGGTATGTTATTCATGCCATGAGACAATAA
1 ATATGTGGGTATGTTATTCATGCCATGTGACAATAA
74977 ATATGTAGGGTATGTTATTCATGCCATGTGAC
1 ATATGT-GGGTATGTTATTCATGCCATGTGAC
75009 GGTGAATATA
Statistics
Matches: 179, Mismatches: 32, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
36 128 0.72
37 24 0.13
40 27 0.15
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (36 bp):
ATATGTGGGTATGTTATTCATGCCATGTGACAATAA
Found at i:91634 original size:17 final size:17
Alignment explanation
Indices: 91589--91637 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
91579 CTATAGTATA
* *
91589 ATTGTCCCTGCATTATT
1 ATTGTCACTGCATTTTT
* *
91606 AATGTCATTGCATTTTT
1 ATTGTCACTGCATTTTT
*
91623 ATTGTCGCTGCATTT
1 ATTGTCACTGCATTT
91638 CCATTTATAT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.49
Consensus pattern (17 bp):
ATTGTCACTGCATTTTT
Found at i:94686 original size:27 final size:27
Alignment explanation
Indices: 94642--94695 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
94632 TGGAAATAAT
*
94642 AACAATGTTCCACTATTGCT-GCCACAA
1 AACAATGTTCCACCATTG-TAGCCACAA
* *
94669 AACACTGTTCCTCCATTGTAGCCACAA
1 AACAATGTTCCACCATTGTAGCCACAA
94696 CACGTCAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.31, C:0.31, G:0.11, T:0.26
Consensus pattern (27 bp):
AACAATGTTCCACCATTGTAGCCACAA
Found at i:101951 original size:15 final size:14
Alignment explanation
Indices: 101933--101979 Score: 53
Period size: 12 Copynumber: 3.4 Consensus size: 14
101923 CGAAGAGAAT
101933 AGAGAAGAAGAAGGA
1 AGAGAAGAA-AAGGA
101948 AGAGAAGAAAAGGA
1 AGAGAAGAAAAGGA
* *
101962 A-A-CAGAAAATGA
1 AGAGAAGAAAAGGA
101974 AGAGAA
1 AGAGAA
101980 TTTTGTGCCG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 7 0.26
15 9 0.33
ACGTcount: A:0.64, C:0.02, G:0.32, T:0.02
Consensus pattern (14 bp):
AGAGAAGAAAAGGA
Found at i:108426 original size:45 final size:45
Alignment explanation
Indices: 108376--109019 Score: 752
Period size: 45 Copynumber: 14.2 Consensus size: 45
108366 ATTCAATCCA
* * *
108376 ATGATATGGTAAATATTATTTGATTAATAATGATATATGATATGC
1 ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
**
108421 ATGATATGGTAAATATTATTAT-ATTAGGTATGCTATACGATATGC
1 ATGATATGGTAAATATTATT-TGATTAATTATGCTATACGATATGC
* *
108466 ATCATATGGTAAATATTATTTGATTGATTATGCTATACGATA-GAC
1 ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATG-C
* * *
108511 ATGACAAGATAAATATTATTTGATTAATTATGCTATACGATATGC
1 ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
* * * * * *
108556 ATGATATGGCAAAAATTATTATTTGATTGACTACGTTGTACGATATGC
1 ATGATATGG--TAAA-TATTATTTGATTAATTATGCTATACGATATGC
* * * *
108604 ATAATATGGTAAATATTATTTGATTGATTATGTTATATGATATGC
1 ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
* *
108649 ATGATATGGTAAATATTATTTGATTAAATTATGTTATACAATATGC
1 ATGATATGGTAAATATTATTTGATT-AATTATGCTATACGATATGC
* * *
108695 ATGATATGGTAAATATTATTATTTGATTGATTATGTTGTACGATATGC
1 ATGATATGGT-AA-A-TATTATTTGATTAATTATGCTATACGATATGC
* *
108743 ATGATATGGTAAACATTATTTGATTGATTATGCTATACGATATGC
1 ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
* * *
108788 ATGATATGATAAATATTATTTGATTAATTATGTTGTACGATATGC
1 ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
* * * * *
108833 ATGATATGATAAATATTATTTGATTGATTATGTTATATGATATGT
1 ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
* * * ** *
108878 ATGATATGGTAAATATTACTTGATTGATTGTAATATATGATATGC
1 ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
* ** *
108923 ATCATATGAAAAATATTATTTCATTAATTATGCTATACGATATGC
1 ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
* * * *
108968 AAGATATGCTAAATATTATTTGATTGATTATGCTATACAATATGC
1 ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
109013 ATGATAT
1 ATGATAT
109020 ACGTTTCACT
Statistics
Matches: 516, Mismatches: 72, Indels: 22
0.85 0.12 0.04
Matches are distributed among these distances:
44 2 0.00
45 399 0.77
46 33 0.06
47 7 0.01
48 63 0.12
49 12 0.02
ACGTcount: A:0.36, C:0.06, G:0.16, T:0.42
Consensus pattern (45 bp):
ATGATATGGTAAATATTATTTGATTAATTATGCTATACGATATGC
Found at i:117493 original size:371 final size:371
Alignment explanation
Indices: 116810--117552 Score: 1139
Period size: 371 Copynumber: 2.0 Consensus size: 371
116800 GCATGTAGTA
* **
116810 GTGATACGAGTCGCAAAGACCAAATTCAAGCTTATGAATGTGATGCGATCAAAGTTTCTCAAGGC
1 GTGATACGAGTCGCAAAGACCAAATTCAAGCTTATAAATGTGATGCGATCAAAGTTTCGAAAGGC
* * *
116875 CCAATAATGAGGTCGAAGGCCAAGCAAATTTGAGCAAGATTGAACGGGACCATCCAAGACTTCGT
66 CCAATAACGAGGTCGAAGGCCAAGCAAATTCGAGCAAGATTGAACAGGACCATCCAAGACTTCGT
* * * ** *
116940 TACCAAGGCCCTAGATGTGCACACGATCGAAAAAGAAAATCAAGATTCACTTTCTTGTTTTCAAG
131 TACCAAGACCCTAAATGCGCACACGATCGAAAAAGAAAATCAAGATTCACTTGATTGTTTTAAAG
*
117005 AAAATCAAGAAACCGAATCGTGGTCCAATTTTTTCATTCCAAACAATTTCAAGAATTAAGAAAAT
196 AAAATCAAGAAACCGAATCGTGGTCCAATTTTTTCATTCCAAACAATTTCAAGAATCAAGAAAAT
** *
117070 CAAGATTTCAAATCTTGGAAATCTTGGTCCAAGAAATTGAAGCTGCCAATTTTCAAGTTGGGTAA
261 CAAGATTTCAAATCTTGGAAATCTTGGTCCAAGAAACCGAAGCTGCCAATTTTCAAGTTGGGGAA
* * *
117135 TTCAACAGGCTTGCGACGACTTTTTGGATGGGATCCAAGAATTTAT
326 ATCAACAGGATTGAGACGACTTTTTGGATGGGATCCAAGAATTTAT
* * *
117181 GTGATACGAGTCGCAAGGCCCAAATTCAAGCTTATAAATGTGATGGGATCAAAGTTTCGAAAGGC
1 GTGATACGAGTCGCAAAGACCAAATTCAAGCTTATAAATGTGATGCGATCAAAGTTTCGAAAGGC
* *
117246 TCAATAACGAGGTCGAAGGCCAA-CAAAATTCGAGCAAGATTGAATAGGACCATCCAAGACTTCG
66 CCAATAACGAGGTCGAAGGCCAAGC-AAATTCGAGCAAGATTGAACAGGACCATCCAAGACTTCG
* * * *
117310 TTACTAAGACCCTAAATGCGCACATG-GCTGAAAAAGATAATCAAGATTCACTTGATTGTTTTAA
130 TTACCAAGACCCTAAATGCGCACACGATC-GAAAAAGAAAATCAAGATTCACTTGATTGTTTTAA
* * *
117374 AGAAAATGAAGAAACCGAATCTTGGTCCGATTTTTTCATTCCAAACAATTTCAAGAATCAAGAAA
194 AGAAAATCAAGAAACCGAATCGTGGTCCAATTTTTTCATTCCAAACAATTTCAAGAATCAAGAAA
117439 ATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGAAACCGAAGCTGCCAATTTTCAAGTTGGGG
259 ATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGAAACCGAAGCTGCCAATTTTCAAGTTGGGG
** * *
117504 AAATCAGTAGGATTGAGACGACTTTTTGGTTGGGATCCAGGAATTTAT
324 AAATCAACAGGATTGAGACGACTTTTTGGATGGGATCCAAGAATTTAT
117552 G
1 G
117553 GGTTGCAATG
Statistics
Matches: 335, Mismatches: 35, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
370 2 0.01
371 333 0.99
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (371 bp):
GTGATACGAGTCGCAAAGACCAAATTCAAGCTTATAAATGTGATGCGATCAAAGTTTCGAAAGGC
CCAATAACGAGGTCGAAGGCCAAGCAAATTCGAGCAAGATTGAACAGGACCATCCAAGACTTCGT
TACCAAGACCCTAAATGCGCACACGATCGAAAAAGAAAATCAAGATTCACTTGATTGTTTTAAAG
AAAATCAAGAAACCGAATCGTGGTCCAATTTTTTCATTCCAAACAATTTCAAGAATCAAGAAAAT
CAAGATTTCAAATCTTGGAAATCTTGGTCCAAGAAACCGAAGCTGCCAATTTTCAAGTTGGGGAA
ATCAACAGGATTGAGACGACTTTTTGGATGGGATCCAAGAATTTAT
Done.