genome.fa.s11796.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011796.1 Kokia drynarioides strain JFW-HI SEQ_126791, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  228864

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2719--2854	41	3.4	39	80	10	125	25	21	19	33	1.97
13718--13758	18	2.3	18	86	0	55	31	17	31	19	1.95
13726--13767	18	2.3	18	87	0	57	30	11	33	23	1.91
17783--17844	29	2.1	31	87	6	92	53	0	3	43	1.17
30849--30888	16	2.6	15	85	14	55	27	0	0	72	0.85
37583--37718	70	1.9	70	95	2	247	42	7	11	38	1.69
40832--40857	8	3.2	8	100	0	52	23	0	0	76	0.78
42106--42153	19	2.6	19	81	12	57	52	0	0	47	1.00
43270--43299	15	1.9	16	93	6	53	30	3	0	66	1.07
44550--44611	31	2.0	31	90	0	97	32	11	11	45	1.76
57606--57673	33	2.0	35	82	5	86	29	10	2	57	1.47
62629--62702	5	15.0	5	84	8	89	20	1	41	36	1.61
62621--62683	31	2.0	31	100	0	126	15	3	46	34	1.62
63715--63781	30	2.3	31	84	7	86	46	4	11	37	1.61
76221--76344	23	5.5	22	77	7	81	38	25	23	12	1.89
76295--76358	23	2.8	23	88	9	87	40	21	25	12	1.88
78186--78382	24	8.2	24	87	0	277	20	26	17	34	1.95
83235--83281	24	2.0	23	87	4	67	25	10	10	53	1.68
90991--91048	20	2.9	19	82	12	64	50	3	39	6	1.46
91445--91487	17	2.5	17	92	0	68	18	11	13	55	1.68
93621--93667	24	2.0	23	84	12	60	27	12	8	51	1.69
94025--94069	22	2.0	23	83	12	58	42	11	20	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94839--94937	26	3.8	26	100	0	198	28	31	12	28	1.92
101690--102003	159	2.0	159	93	0	538	38	15	20	25	1.92
113965--113998	17	2.0	17	94	0	59	20	17	8	52	1.71
116333--116365	17	1.9	17	88	11	50	72	3	6	18	1.18
122319--122351	17	1.9	17	88	11	50	72	3	6	18	1.18
140069--140142	33	2.4	33	84	8	102	60	1	1	36	1.13
140126--140176	26	2.0	25	88	3	75	54	1	1	41	1.22
140092--140163	21	3.4	21	70	19	60	58	1	1	38	1.15
142778--143027	69	3.6	68	73	7	193	35	21	18	24	1.96
142810--143027	70	3.2	68	74	9	210	35	22	18	23	1.95
143070--143346	58	4.8	58	85	1	376	33	17	12	35	1.88
146375--146429	28	2.0	28	82	3	67	50	7	9	32	1.61
149965--150046	40	2.0	40	88	0	119	37	12	13	36	1.82
159794--159818	12	2.1	12	100	0	50	0	32	0	68	0.90
166970--167013	19	2.3	19	88	0	61	52	6	25	15	1.68
166980--167018	19	2.1	19	100	0	78	48	10	20	20	1.78
167447--167482	14	2.6	14	90	0	54	41	16	11	30	1.83
173885--173918	17	1.9	18	88	5	52	29	2	20	47	1.65
175769--175796	14	2.0	14	100	0	56	14	21	14	50	1.78
175926--176085	55	2.9	55	80	0	158	29	17	22	30	1.97
181277--181307	16	1.9	16	93	0	53	61	3	12	22	1.46
182074--182178	55	1.9	55	88	0	156	24	21	25	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184810--184853	21	2.1	21	82	0	52	65	6	15	11	1.44
192254--192547	146	2.0	146	93	0	498	31	18	22	28	1.97
195855--195884	2	15.0	2	100	0	60	0	0	50	50	1.00
201807--201853	22	2.0	22	84	15	60	25	29	21	23	1.99
208430--208468	12	3.3	12	85	7	53	74	2	17	5	1.12
211998--212028	5	6.4	5	92	7	55	19	0	0	80	0.71
221261--221416	47	3.3	47	87	0	213	49	21	10	18	1.78
226154--226517	29	12.5	28	74	13	224	36	26	3	33	1.74
226174--226370	60	3.3	58	82	7	211	38	26	1	33	1.66
226149--226529	58	6.5	60	76	12	260	36	26	3	33	1.74
226226--226544	86	3.7	85	76	10	231	36	27	3	31	1.75
228823--228864	2	21.0	2	100	0	84	50	0	0	50	1.00

Tables:   1

The End!