genome.fa.s11800.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011800.1 Kokia drynarioides strain JFW-HI SEQ_126795, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107682

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9270--9616	29	12.0	30	70	19	122	34	4	28	32	1.79
9279--9700	59	7.2	57	78	9	322	33	4	27	34	1.76
9423--9700	29	9.5	30	80	5	273	33	2	26	36	1.72
9279--9700	117	3.6	116	80	8	416	33	4	27	34	1.76
9423--9700	87	3.2	87	83	6	303	33	2	26	36	1.72
9419--9700	30	9.7	29	80	7	286	33	2	27	35	1.72
10465--10499	5	7.0	5	86	0	52	0	17	5	77	0.96
10846--10893	14	3.5	14	77	13	55	29	2	0	68	1.01
10856--10908	3	17.3	3	81	11	54	37	1	0	60	1.08
10845--10894	17	3.0	16	88	5	64	30	4	0	66	1.10
11721--11793	23	3.2	24	80	7	89	53	2	2	41	1.29
11721--11776	6	9.7	6	81	12	64	53	1	1	42	1.21
14954--15013	29	2.1	29	93	0	102	41	15	21	21	1.89
15100--15206	40	2.7	40	81	5	126	22	16	20	40	1.91
15421--15467	24	2.0	24	83	8	60	46	10	12	29	1.76
17250--17410	55	2.9	54	81	9	184	26	35	17	21	1.95
17360--17456	43	2.3	43	85	0	131	28	37	15	18	1.92
19590--19631	17	2.4	18	80	11	52	38	2	2	57	1.25
19881--19918	19	2.0	19	94	0	67	42	7	15	34	1.76
20715--20804	43	2.1	43	85	0	117	31	16	15	36	1.90
21404--21461	22	2.6	22	94	0	107	25	41	12	20	1.87
22533--22579	18	2.7	17	81	12	51	55	23	4	17	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28966--29068	45	2.3	45	87	0	143	31	6	18	43	1.76
30527--30575	21	2.6	18	78	15	53	36	0	32	30	1.58
35192--35229	18	2.1	18	90	0	58	52	13	7	26	1.67
47422--47630	114	1.8	114	85	2	294	32	21	16	30	1.95
47422--47574	56	2.7	54	74	12	146	32	19	16	31	1.94
49156--49189	7	4.9	7	92	0	59	32	0	38	29	1.58
51100--51281	26	7.0	26	87	1	213	26	15	28	29	1.96
57174--57508	51	6.6	51	79	7	301	33	13	21	31	1.92
57183--57508	150	2.2	150	80	6	354	33	13	21	31	1.92
67432--67509	19	3.9	19	75	11	59	66	3	2	26	1.22
67593--67690	8	11.5	8	80	13	90	73	1	2	23	1.00
67593--67690	9	11.3	9	78	12	91	73	1	2	23	1.00
67593--67690	16	5.7	17	79	12	103	73	1	2	23	1.00
68965--69010	23	1.9	25	83	16	62	26	2	6	65	1.28
85273--85318	17	2.6	17	89	3	65	28	30	2	39	1.69
85261--85318	9	6.7	9	72	20	52	24	32	1	41	1.65
86588--86621	17	2.0	17	94	0	59	20	29	14	35	1.93
86611--86688	27	2.9	27	84	0	102	32	20	25	21	1.98
87263--87307	24	2.0	23	82	8	56	40	11	13	35	1.80
87524--87557	13	2.7	13	86	4	52	26	5	8	58	1.51
89171--89224	20	2.8	20	83	8	67	24	0	3	72	1.01
89170--89219	26	2.0	25	84	4	64	22	0	4	74	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95208--95243	4	8.8	4	96	3	63	22	0	0	77	0.76
95681--95727	14	3.3	14	79	11	51	10	4	2	82	0.88
95760--95800	17	2.5	17	88	4	57	21	2	2	73	1.07
95802--95828	6	4.5	6	100	0	54	0	0	14	85	0.61
97908--97951	19	2.3	19	84	7	54	47	4	4	43	1.44
98109--98244	60	2.2	60	79	3	148	43	4	10	41	1.58
99167--99233	23	3.0	22	84	6	80	11	20	17	49	1.79
100885--100915	6	5.2	6	96	0	53	32	0	54	12	1.38
100912--100937	6	4.3	6	100	0	52	34	0	50	15	1.45
100885--100930	12	3.8	13	81	18	55	32	0	54	13	1.39
102911--102936	2	13.0	2	100	0	52	50	0	50	0	1.00

Tables:   1

The End!