Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011803.1 Kokia drynarioides strain JFW-HI SEQ_126798, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2122
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:988 original size:43 final size:42

Alignment explanation


    Indices: 936--1025  Score: 144
    Period size: 43  Copynumber: 2.1  Consensus size: 42

        926 AGTTAAAATA

                                  *        *          
        936 AATAAATTTAGTCAAAATAAAATTAAGAAAATAACAAATTTG
          1 AATAAATTTAGTCAAAATAAAAATAAGAAAAAAACAAATTTG

                                                  *    
        978 AATATAATTTAGTCAAAATAAAAATAAGAAAAAAACAACTTTG
          1 AATA-AATTTAGTCAAAATAAAAATAAGAAAAAAACAAATTTG

                 
       1021 AATAA
          1 AATAA

       1026 GCTTATTTGA


Statistics
Matches: 44,  Mismatches: 3, Indels: 2
        0.90            0.06        0.04

Matches are distributed among these distances:
  42    5  0.11
  43   39  0.89

ACGTcount: A:0.61, C:0.06, G:0.07, T:0.27


Consensus pattern (42 bp):   
AATAAATTTAGTCAAAATAAAAATAAGAAAAAAACAAATTTG

Found at i:2068 original size:13 final size:13

Alignment explanation


    Indices: 2050--2074  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2040 ATATTTTATC

                         
       2050 ACTTTTATAGATG
          1 ACTTTTATAGATG

                        
       2063 ACTTTTATAGAT
          1 ACTTTTATAGAT

       2075 TTACTTATGT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48


Consensus pattern (13 bp):   
ACTTTTATAGATG
Done.