Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011806.1 Kokia drynarioides strain JFW-HI SEQ_126801, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8841
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:2972 original size:216 final size:216
Alignment explanation
Indices: 8--2972 Score: 3296
Period size: 216 Copynumber: 13.8 Consensus size: 216
1 GTCTCTG
* * * * * *
8 GGTTCTTGGACAAACATCCGAACTGGTAAAAATTTTACGAGTTCTTTTATAACTTA-G-TCACCT
1 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTC-CTT
* * ** * * * *
71 AAAGTATTCAAAACTATAAATTCCTTCGAGAAATTTTCCGAACATTACATTCTCGAGAAATCGTA
65 AAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCA
* * *
136 ACATTTGGTCAAAATAGTTTGTCATTCTGTAAA-ACACTTTTTGTCTTTGAATTTAAAACTTATT
130 TCATTTGGTCAAAATAGTTTGTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATT
**
200 TTGGTGAGAATTGTTTGTCTTTT
194 TTGGTGAGAATTGTTTGTCTCAT
* * * * * * * *
223 GGTTCTTAGATGTACATT-CGAACTGGTAAAACTTTTTCGAGTTCTTTTACAACTTAGGATCCTT
1 GGTTCTTGGACGAAC-TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTT
* * * * * *
287 AAAGCATTCAAAACAATCCACTCCTTCGAGAAATTTTTCGAACATTCCATTCTCGAGAAATTGCA
65 AAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCA
** *
352 TCATTTGGTCTGAATAGTTTGTCATTTTGTAAA-ACACTTTTTTTCTTTGAATTAAAAACTTATT
130 TCATTTGGTCAAAATAGTTTGTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATT
* *
416 TTGGTGACAATTGTTTTTCT-ATT
194 TTGGTGAGAATTGTTTGTCTCA-T
* * * * * * *
439 GGTCCTTGGCCAAACTTCTGAACTTCTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTA
1 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* * *
504 AAGTATTCAAGACGATCCATTCCTTCGAGGAATTTCTCGAAC--TCCATGCTCGAGAAATCACAT
66 AAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCAT
* * * * *
567 CAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTTTGAGTTAAAAACTTATTTA
131 CATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTT
* * *
632 CGTGAAAATTGTTTGTATCAT
196 GGTGAGAATTGTTTGTCTCAT
* * * ** * **
653 GGTTTTTGGCCCAACTTCAAAACTTGTCAAAGTTTTACGAGTTCTTGAATAACTTAGGTTCCTTA
1 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* * * * * *
718 AAGTATTCAAGACGATCCAATCCTTCGAGCAGTTTTTCGAAAATTCAAAGCTCGAGAAATCGCAT
66 AAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCAT
* * * *
783 CACTTGGTCCAATTAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATT-AAAACTTATTTA
131 CATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTT
*
847 GGTAAGAATTGTTTGTCTC-T
196 GGTGAGAATTGTTTGTCTCAT
* ** * *
867 GGGTTCTTGGACAAACACCCGAACTGGT-AAATATTTTACGAGTTCTTTTATAACTTA-G-TCAC
1 -GGTTCTTGGACGAACTTCCGAACTTGTCAAA-CTTTTACGAGTTCTTTTATAACTTAGGTTC-C
* * ** * * * *
929 CTAAAGTATTCAAAACGATAAATTCCTTCGAGAAATTTTCCGAACATTACATTCTCGGGAAATCG
63 TTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCG
* * * *
994 TAACATTTGGTCAAAATAGTTTGTCATTCTGTAAA-ACACTTTTTGTCTTTGAATTTAAAACTTA
128 CATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTA
1058 TTTTGGTGAGAATTGTTTGTCT-ATT
192 TTTTGGTGAGAATTGTTTGTCTCA-T
* * ** * *
1083 GGTCCTTGGTCGAACTTTTGAACTTGTCAAAGTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
1 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* * * * * ** *
1148 AAGTATTCAAGATGATCCCTTACTTTGAGGAATTTCCCAAACATTCCATGCTCGAGAAATCGCAT
66 AAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCAT
* * *
1213 CATTTGGTCTAAATAGTTTCTCATTTTGTAAACAACTTTTTGTCTTTGAATT-AAAACTTATTTA
131 CATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTT
*
1277 GGTGAGAATTGTTTGTCTCTT
196 GGTGAGAATTGTTTGTCTCAT
* * * * *
1298 GGTTCTTGGATGAACATCCGAACTGGTAAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTT
1 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* * * * * *
1363 AAGTATTCAAAACGATGCATTCCTTCGAGAAAATTTTCGAACATTCCATTCTCGGGAAATCGTAT
66 AAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCAT
* * *
1428 CATTTGGTCAAAATAGTTTGTCATTTTATAAA-ACACTTTTTATCTTTGAATTGAAAACTTATTT
131 CATTTGGTCAAAATAGTTTGTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTT
* *
1492 TGGTAAGAATTATTTGTCT-ATT
195 TGGTGAGAATTGTTTGTCTCA-T
* * * * * *
1514 GGTCCTTGGTCGAACTTCTGAACTTGTCGAACTTTTACGAGTTTTTTTATAACTTTGGTTCCTTA
1 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* * * * * ** * *
1579 AAGTATTCAAGATGATCCCTTACTTTGAGGAATTTCCCAAACATTCCATGCTCGAGAAATCACAT
66 AAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCAT
* * * * * * *
1644 CATTTGGTCTAAGTAGTTTCTCATTTTGTAAACGACTTTTTATCTTTAAATTAAAAACTTATTTA
131 CATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTT
* * *
1709 CGTGGGAATTGTTTGCCTCAT
196 GGTGAGAATTGTTTGTCTCAT
* * * ** *
1730 GGTCCTTGG-CTGAACTTCCGAACTTGTCAAAGTTTTATGAGTTCTTGAATAACATAGGTTCCTT
1 GGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTT
* * * *
1794 AAAGTATTCAGGACGATCTATTCCTTCG-GACAATTTTTTGAACATTCCACGCTCGAGAAATCGC
65 AAAGTATTCAAGACGATCCATTCCTTCGAGA-AATTTTTCGAACATTCCATGCTCGAGAAATCGC
* * * * * *
1858 ATCGTTTGGTCCAATTAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAGAAACTGATT
129 ATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATT
* * * *
1923 TTGGTGAGAATTATTTATCCCTT
194 TTGGTGAGAATTGTTTGTCTCAT
* * * *
1946 GGTTCTTGGACGAACATCCGAACTGGTAAAACTTTTACGAGTTCTTTTATAACTTAGGTACCTTA
1 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* * * * * * * *
2011 AAGTATTCAAAACGATGCATTCCTTCGAGAAAATTTCCGAACATTCCATTCTCGGGAAATCGTAA
66 AAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCAT
* * *
2076 CATTTAGTCAAAAAAGTTTGTCATTTTGTAAA-ACACTTTTTATCTTTGAATTAAAAACTTATTT
131 CATTTGGTCAAAATAGTTTGTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTT
*
2140 TGGTAAGAATTGTTTGTCT-ATT
195 TGGTGAGAATTGTTTGTCTCA-T
* * * * * *
2162 GGTCCTTGGTCGAACTTCTGAACTTGTAAAACTTTTACGAGTTCTCTTATAACTTCGGTTCCTTA
1 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* * * * * *
2227 AAGTATTCAAGACGGTCCATTCCTTTGAGGAGTTTCTCGAACATTTCATGCTCGAGAAATCGCAT
66 AAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCAT
* * * * *
2292 CATTTGGTCCAATTAGTTTGTCATTTTGTAAATAACCTTTTGTCTTTGAATTAAAATCTTATTTT
131 CATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTT
* *
2357 TGTGAGAATTGTTTGTCTCTT
196 GGTGAGAATTGTTTGTCTCAT
* * * * * * * *
2378 GGTTCTTAGATGTACATCTGAACTGGTAAAACTTTTACGAGTTCTTTTATAACTTAGGATCCTTA
1 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* * * * * *
2443 AAGCATTCAAAACAATCCATTCCTTCGAGAAATTTTTTGAACATTCCATTCTCGAGAAATTGCAT
66 AAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCAT
** * *
2508 CATTTGGTCTGAATAGTTTGTCATTTTGTAAA-ACACTTTTTGGCTTTGAATTAAAAACTTAGTT
131 CATTTGGTCAAAATAGTTTGTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTT
*
2572 TGGTGAGAATTGTTTTTCT-ATT
195 TGGTGAGAATTGTTTGTCTCA-T
* * * * * * * *
2594 GGTCCTTGGGCAAACTTCTGAACTTCTCAAACTTTTACGAGTTCTTCTATAACTTTGATTCCTTA
1 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* *
2659 AAGTATTCAAGACGATCCATTCCTTCGAGGAATTTCTCGAACATTCCATGCTCGAGAAATCGCAT
66 AAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCAT
* * * * *
2724 CAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTTTTAGTTAAAAACTTATTTA
131 CATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTT
*
2789 CGTGAGAATTGTTTGTCTCAT
196 GGTGAGAATTGTTTGTCTCAT
* * * * **
2810 GGTTCTTGGCCGAACTTCCAAACTTGTCAAAGTTTTACGANTTCTTGAATAACTTAGGTTCCTTA
1 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
* * * * *
2875 AAGTATTCAAGACGATCCATTCCTTCGAGCAGTTTTTCGAAAATTCAAAGCTCGAGAAATCGCAT
66 AAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCAT
* * * *
2940 CATTTGGACCAATTAGCTTGTCATTTTGTAAAC
131 CATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
2973 TTCTCAAACT
Statistics
Matches: 2291, Mismatches: 421, Indels: 75
0.82 0.15 0.03
Matches are distributed among these distances:
213 3 0.00
214 285 0.12
215 373 0.16
216 1618 0.71
217 12 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (216 bp):
GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTA
AAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGAGAAATCGCAT
CATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTT
GGTGAGAATTGTTTGTCTCAT
Found at i:3285 original size:355 final size:356
Alignment explanation
Indices: 2614--3327 Score: 992
Period size: 355 Copynumber: 2.0 Consensus size: 356
2604 CAAACTTCTG
* * *
2614 AACTTCTCAAACTTTTACGAGTTCTTCTATAACTTTGATTCCTTAAAGTATTCAAGACGATCCAT
1 AACTTCTCAAACTTTTACGAGTTCTTCTATAACTTAGATACCTTAAAGTATTCAAAACGATCCAT
* *
2679 TCCTTCGAGGAATTTCTCGAACATTCCATGCTCGAGAAATCGCATCAATTGGTCAAAATAGTTTG
66 TCCTTCGAGAAATTTCTCGAACATTCCATGCTCGAGAAATCGCATCAATTGGTCAAAAAAGTTTG
* * * * *
2744 TCATTTTGTAAACAAGTTTTTGTCTTTTAGTTAAAAACTTATTTACGTGAGAATTGTTTGTCTCA
131 TCATTTTGTAAACAACTTTTTATCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTGTCTCA
* * *
2809 TGGTTCTTGGCCGAACTTCCAAACTTGTCAAAGTTTTACGANTTCTTGAATAACTTAGGTTCCTT
196 TGGTCCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACGATTTCTTGAATAACTTAGGTTCCTT
* **
2874 AAAGTATTCAAGACGATCCATTCCTTCGAGCAGTTTTTCGAAAATTCAAAGCTCGAGAAATCGCA
261 AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCCCGAAAATTCAAAGCTCGAGAAATCGCA
2939 TCATTTGGACCAATTAGCTTGTCATTTTGTA
326 TCATTTGGACCAATTAGCTTGTCATTTTGTA
* * *
2970 AACTTCTCAAACTTTTACGAGTTCTTTTATAACTTAGGTACCTTAAAGTATTCAAAATGATGCC-
1 AACTTCTCAAACTTTTACGAGTTCTTCTATAACTTAGATACCTTAAAGTATTCAAAACGAT-CCA
* * *
3034 TTCCTTCGAGAAATTT-TCGAACATTCCATTCTCGAGAAATCGTATCATTTGGTCAAAAAAGTTT
65 TTCCTTCGAGAAATTTCTCGAACATTCCATGCTCGAGAAATCGCATCAATTGGTCAAAAAAGTTT
**
3098 GTCATTTTGTAAA-ACACTTTTTATCTTTGAATTAAAAACTTATTTTGGTAAGAATTGTTTGTCT
130 GTCATTTTGTAAACA-ACTTTTTATCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTGTCT
* * *** *
3162 -ATTGGTCCTTGGTCTAACTTTTGAACTTGTCAAACTTTTACGATTTCTCT-TATAACTTCA-GT
194 CA-TGGTCCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACGATTTCT-TGAATAACTT-AGGT
* * * * *
3224 TCCTTAAAGTATTCAAGACGGTCCATTCCTTTGAGGAATTTCCCGAACATTTC-ATGCTCGAGAA
256 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCCCGAA-AATTCAAAGCTCGAGAA
* *
3288 ATCGCATCATTTGGTCCAATTAGTTTGTCATTTTGTA
320 ATCGCATCATTTGGACCAATTAGCTTGTCATTTTGTA
3325 AAC
1 AAC
3328 AACCTTTTGT
Statistics
Matches: 315, Mismatches: 37, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
354 2 0.01
355 235 0.75
356 76 0.24
357 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (356 bp):
AACTTCTCAAACTTTTACGAGTTCTTCTATAACTTAGATACCTTAAAGTATTCAAAACGATCCAT
TCCTTCGAGAAATTTCTCGAACATTCCATGCTCGAGAAATCGCATCAATTGGTCAAAAAAGTTTG
TCATTTTGTAAACAACTTTTTATCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTGTCTCA
TGGTCCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACGATTTCTTGAATAACTTAGGTTCCTT
AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCCCGAAAATTCAAAGCTCGAGAAATCGCA
TCATTTGGACCAATTAGCTTGTCATTTTGTA
Found at i:3349 original size:216 final size:216
Alignment explanation
Indices: 2970--8841 Score: 6577
Period size: 216 Copynumber: 27.3 Consensus size: 216
2960 TCATTTTGTA
* * * *
2970 AACTTCTCAAACTTTTACGAGTTCTTTTATAACTTAGGTACCTTAAAGTATTCAAAATGATGCC-
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGAT-CCA
* * * * *
3034 TTCCTTCGA-GAAATTTTCGAACATTCCATTCTCGAGAAATCGTATCATTTGGTCAAAAAAGTTT
65 TTCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTT
* *
3098 GTCATTTTGTAAA-ACACTTTTTATCTTTGAATTAAAAACTTATTTTGGTAAGAATTGTTTGTCT
130 GTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCT
* * *
3162 ATTGGTCCTTGGTCTAACTTTTG
194 ATTGGTTCTTGGTCGAACTTCTG
* * *
3185 AACTTGTCAAACTTTTACGATTTCTCTTATAACTTCA-GTTCCTTAAAGTATTCAAGACGGTCCA
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGACGATCCA
* ** * *
3249 TTCCTTTGAGGAATTTCCCGAACATTTCATGCTCGAGAAATCGCATCATTTGGTCCAATTAGTTT
65 TTCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTT
* * * *
3314 GTCATTTTGTAAACAACCTTTTGTCTTTGAATTAAAATCTTATTTTTGTGAGAATTGTTTGTCTC
130 GTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTA
* * *
3379 TTGGTTCTTAGAT-GTACATCTG
195 TTGGTTCTT-GGTCGAACTTCTG
* * * * * *
3401 AACTGGTAAAACTTTTACGAGTTCTTTTATAACTTAGGATCCTTAAAGCATTCAAAACAATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * **
3466 TCCTTCGAGAAATTTTTCGAACATTCCATTCTTGAGAAATTGTATCATTTGGTCGGAATAGTTTG
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* *
3531 TCATTTTGTAAA-ACACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGACTTGTTTTTCTA
131 TCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTA
** * *
3595 TTGGCCCTTGGCCAAACTTCTG
195 TTGGTTCTTGGTCGAACTTCTG
* * * **
3617 AACTTCTCAAACTTTTACGCGTTCTTTTATAATTTATATTCCTTAAAGTATTCAAGACGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * *
3682 TCCTTCGAGAAATTTCTCGAACATTCCATGCTCCAGAAATCGCATCAATTGGTCCAAATAGTTTG
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* * * * **
3747 TCATTTTGTAAAAAAGTTTTTGTCTTTTAGTTAAAAACTTATTTACGTGAGAATTGTTTGTCTCA
131 TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCT-A
* *
3812 -TGGTTCTTGGCCGAACTTC-C
195 TTGGTTCTTGGTCGAACTTCTG
* *
3832 AACCTTGTCAAAGTTTTACGAGTTCTTTAATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCA
1 AA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * * *
3897 TTCCTTCGAGCAGTTTTTCGAAAATTCAAAGCTCGAGAAATCGTATCATTTGGTCCAATTAGTTT
65 TTCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTT
*
3962 GTCATTTTGTAAACAACTTTTTGTCTTTGAATT-AAAACTTATTTAGGTGAGAATTGTTTGTCT-
130 GTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTA
* * * *
4025 TTGGGTTCTTGGACAAACATCCG
195 TT-GGTTCTTGGTCGAACTTCTG
* * * * * *
4048 AACTGGTAAAACTTTTACGAGTTCTTTTATAACTTA-G-TCACCTAAAGTATTCAAAAAGATGCA
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTC-CTTAAAGTATTCAAGACGATCCA
* * * * * * * *
4111 TTCCTTCGA-GAAATTTTCGAACATTACATTCTAGTGAAATCGTAACATTTGGTCAAAATAGTTT
65 TTCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTT
4175 GTCATTTTGTAAA-ACACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCT
130 GTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCT
* *
4239 ATTGGTCCTTGGTCGAACTTTTG
194 ATTGGTTCTTGGTCGAACTTCTG
* * * ** *
4262 AACTTGTCAAAGTTTTACGAGTTCTTTTATAACTTCGGTTGCTTCAAA-TATTCAAGATTATCCC
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTT-AAAGTATTCAAGACGATCCA
* * * * * *
4326 TTACTTTGAGGAATTCTCCGAACATTCCATGCTCGAGAAATCGCATCATTTCGTCTAAATAGTTT
65 TTCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTT
* * *
4391 CTCATTTTGTAAACAACTTTTTGTCTTTGAATT-AAAACTTATTTAGGTGAGAATTGTTTGTCTC
130 GTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTA
* * **
4455 TTGGTTCTTGGACGAACATCCA
195 TTGGTTCTTGGTCGAACTTCTG
* * * *
4477 AACTGGTAAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAAACGATGCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * *
4542 TCCTTCGAGAAATTTTCCGAACATTCCATTCTCGGGAAATCGTATCATTTGGTCAAAATAGTTTG
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* * * *
4607 TCATTTTGTAAA-ACACTTTCTATCTTCGAATTAAAAACTTATTTTGGTAAGAATTGTTTGTCTA
131 TCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTA
* *
4671 TTGGTCCTTGGTCGAACTTTTG
195 TTGGTTCTTGGTCGAACTTCTG
* * *
4693 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCCT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * ** * * *
4758 TACTTTGAGGAATTTCCCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTC
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* *
4823 TCATTTTGTAAAAAACTTTTTGTCTTTGAATTAAAAACTTATTTAT-GTGAGAATTGTTTGCCTC
131 TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTT-TGGTGAGAATTGTTTGTCT-
* *
4887 A-TGGTCCTTGG-CTGAACTTCCG
194 ATTGGTTCTTGGTC-GAACTTCTG
* * ** * * *
4909 AACTTGTCAAAGTTTTATGAGTTCTTGAATAACATAGATTCCTTACAGTATTCAAGACGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * ** *
4974 TCCTTCGAGAAATTTTTTGAACATTCCATGCTTGAGAAATCGCATTGTTTGGTCCAATTAGTTTG
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* * * *
5039 TCATTTTGTAAACAACTGTTTGTATTTGAATTAAAAACTTATATTGGTGAGAATTGTTTGTCTCT
131 TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTAT
* * *
5104 TGGTTCTTGGACGAACATCAG
196 TGGTTCTTGGTCGAACTTCTG
* * * * * *
5125 AACTGGT-ACAGCTTTTTCAAGTTCTTTTATAACTTATGTTCCTT-AAGTATTCCAAG-CGATGC
1 AACTTGTCA-AACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATT-CAAGACGATCC
* *
5187 ATTCCTTCGA-GAATTCTTCCGAACATTCCATTCTCG-GAAAATCGCATCATTTGGTCCAAATAG
64 ATTCCTTCGAGGAATT-TTTCGAACATTCCATGCTCGAG-AAATCGCATCATTTGGTCCAAATAG
* * ** *
5250 TTTGTCATTTTGTAAA-ACACTTTTTTTCTTTAAAAGAAAAACTTATTTTGGTGAGAATTATTTG
127 TTTGTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTG
* * *
5314 TCTATTGGTCCTTGGTCGAATTTCTA
191 TCTATTGGTTCTTGGTCGAACTTCTG
* * * * ** *
5340 AACTTGTCAAACTTTTACGAGTTCTTTTATAAGTTCGATTCCTTAAAGCATTCAAGATAATCGAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
** * * ** * *
5405 TCCTTCGAGGAATTTCCCGAACATTCCATGCTCGGGAAATCACATCATTTGGTTTAAATAGGTTC
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* *
5470 TCATTTTGTAAACAACTTTTTGTCTTTAAATTAAAAACTTA-TTTGCGTGTGAATTGTTTGTCTC
131 TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTG-GTGAGAATTGTTTGTCT-
*
5534 ATT-GTTCTTGG-CTGAAATTCTG
194 ATTGGTTCTTGGTC-GAACTTCTG
* ** *
5556 AACTTGTCAAAGTTTTACGAGTTCTTGAATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * ** ** *
5621 TCCTTTGAGCAATTTTTTAAACATTCCGCGCTCGAGAAATCGCATCATTTGGTCCAATTAGTTTG
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* * * * *
5686 TCATTTTGTAAACAAC-TTTTGTCATTGAGTTAAAATCTTATTTTGGTGAGAATTGTTTGGCTCT
131 TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTAT
* * * * *
5750 TTGTTTTTGGACGAACATCCG
196 TGGTTCTTGGTCGAACTTCTG
* * * * * * *
5771 AACTGGTAAAACATTTACGACTTCTTTTATAACTTAGG----TT--AGTTTTCAAAACGATGCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * * * *** *
5830 TCCTTCAAGAAATTTTCCAAATATTCCATTCTCGGGAAATTAAATCAGTTGGTCCAAATAGTTTG
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* ** * *
5895 TCGTTTTGTAAAGTACTTTTCGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTATTTGTCTAT
131 TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTAT
* * *
5960 TGGTCCTT-ATCCGAACATCTG
196 TGGTTCTTGGT-CGAACTTCTG
* * *
5981 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTCAAAGTATTCAAGACGATCCAC
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * *
6046 TCCTTCG-GGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCGTTTGGTCCAATTAGTTT
66 TCCTTCGAGG-AATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTT
* * * * *
6110 GTCATTTTGTAAACAACTTTTTGTATTTGAATTAGAAACTTATTTTGGTGAGAATTTTTTGCCTT
130 GTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTA
* * *
6175 TTGGTTCTTGGACGAACATCCG
195 TTGGTTCTTGGTCGAACTTCTG
* * * * * *
6197 AACTGGTAAAACTTTTACGAGTTCTTTTATAACTTAGGTACCTTAAAGTATTCAAAACAATGCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * * *
6262 TCCTTCGAGAAATTTTTCGAACATTCCATTCTCGGGAAATCGTATCATTTGGTCAAAAAATTTTG
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* *
6327 TCATTTTGTAAA-ACACTTTTTATCTTTGAATTAAAAACTTATTTTGGTAAGAATTGTTTGTCTA
131 TCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTA
*
6391 TTGGTCCTTGGTCGAACTTCTG
195 TTGGTTCTTGGTCGAACTTCTG
* * * * *
6413 AACTTGTCAAACTTTTACAAGTTCTCTTATAACTTCGATTCCTTAAAGTATTCAAGATGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* ** * *
6478 TCCTTTGAGGAATTTCCCGAACATTTCATGCTCGAGAAATCGCATCATTTGGTCCAATTAGTTTG
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* * * * * *
6543 CCATTTTGTAAACAACCTGTTGTCTTTGAATTAAAATCTTATTTTTGTGAGAATTGTTTGTCTCT
131 TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTAT
* * *
6608 TGGTTCTTAGAT-GTACATCTG
196 TGGTTCTT-GGTCGAACTTCTG
* * * * * * *
6629 AACTGGTAAAACTTTTACGAGTTCTTTTACAACTTAGGATCCTTAAAGCATTCAAAACAATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * ** *
6694 TCCTTCGAGAAATTTTTCGAACATTCCATTCTTGAGAAATTGCATCATTTGGTCTGAATAGTTAG
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* * * * *
6759 TCATTTTG-AAAAACACTTTTTGGCTTTGAATTGAAAACTTAGTTTGGTGAGAATTGTTTTTCTA
131 TCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTA
* * *
6823 TTGGTCCTTGGCCAAACTTCTG
195 TTGGTTCTTGGTCGAACTTCTG
* * * *
6845 AACTTCTCAAACTTTTACGAGTACTTTTATAACTTAGATTCCTTAAAGTATACAAGACGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * *
6910 TCCTTCGAGGAATTTCTCAAACATTCCATGCTCGAGAAATCGCATCAATTGGTCCAAATAGTTTG
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* * * *
6975 TCATTTTGAAAACAAGTTTTTGTCTTTGAGTTAAAAACTTATTTAT-GTGAGAATTG-TTCTC-A
131 TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTT-TGGTGAGAATTGTTTGTCTA
* **
7037 -TGGTTCTTGGCCGAACTTCCA
195 TTGGTTCTTGGTCGAACTTCTG
* * *
7058 AACTTGTCAAAGTTTTACGAGTTCTTTAATAAC-TAGGTTCCTTAAAGTATTCAAGATGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * * * *
7122 TCCTACGAGCAATTTTTCGAAAATTCAAAGCTCGAGAAATCGCATCATTTGGACCAATTAGTTTT
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
* * *
7187 TCATTTTGTAAACAACTTTTTGTCTTTGAATT-AAAACTTATTTAGGTTAGAATTGTTTGTCTCT
131 TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTAT
* * * *
7251 TAGTTCTTGGACGAACATCCG
196 TGGTTCTTGGTCGAACTTCTG
* * * * *
7272 AACTGGTAAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC-AGAACGATGCA
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAG-ACGATCCA
* * * * * * *
7336 TTCTTTCGAGAAATTTTTTGAACATTCCATTCTCGGGAAATCGTATCATTTGGTCAAAATAGTTT
65 TTCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTT
* * *
7401 GTCATTTTGCAAA-ACACTTTTTATCTTTG--------ACTTATTTTGGTAAGAATTGTTTGTCT
130 GTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCT
*
7457 ATTGGTCCTTGGTCGAACTTCTG
194 ATTGGTTCTTGGTCGAACTTCTG
* * * * *
7480 AACTTGTCAAACATTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGATGATCCCT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * *
7545 TACTTTGAGGAA-TTTCCTGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAGTAGTTT
66 TCCTTCGAGGAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTT
* ** * *
7609 CTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTACGTGGGAATTGTTTGCCTC
130 GTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCT-
* *
7674 A-TGGTCCTTGG-CTGAACTTCCG
194 ATTGGTTCTTGGTC-GAACTTCTG
* * ** *
7696 AACTTGTCAAAGTTTTATGAGTTCTTGAATAACATAGGTTCCTTAAAGTATTCAAGACGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * *
7761 ACCTTCG-GGCAATTTTTTGAACATTCCATGTTCGAGAAACCGCATCGTTTGGTCCAATTAGTTT
66 TCCTTCGAGG-AATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTT
* *
7825 GTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTC
130 GTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTA
* ** *
7890 TTGGTTCTTGGACGAAAATCAG
195 TTGGTTCTTGGTCGAACTTCTG
* * * * *
7912 AACTGGTAAAACTTTCT-CGAGTTCTTTTATAACTTACGTTCC-TCAAGTATTCAA-AGCGATGC
1 AACTTGTCAAACTTT-TACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGA-CGATCC
* * * * *
7974 ATTCCTTCGAGAAATTTTCCGAACATTCCATTCTGGGGAAATCGCATCATTTGGTCCAAATAGTT
64 ATTCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTT
* * * *
8039 TGTCATTTTGTAAA-ACACTTTTTTTCTTTGAATTAAAAACTTATTTTTGTGCGAATTTTTTGTC
129 TGTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTC
* * * *
8103 TCTTGGTTCTTCGAT-GAACATCCG
193 TATTGGTTCTT-GGTCGAACTTCTG
* * * * *
8127 AACTGGTAAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAATATTCAAGATGATGCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * *
8192 TCCTTCG-GGAAATTTTTTGAACATTCCATTCTC-ATGAAACCGCATCATTTGGCCCAAATAGTT
66 TCCTTCGAGG-AATTTTTCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCCAAATAGTT
*
8255 TGTCATTTTGTAAA-ACACTTTTTGTCTTTGAATTAAAAACATATTTTGGTGAGAATTGTTTGTC
129 TGTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTC
* *
8319 TATTGGTCCTTGGCCGAACTTCTG
193 TATTGGTTCTTGGTCGAACTTCTG
* * * *
8343 AACTTGTCAAACTTTTACGAGTTCTTTTATAAGTTCGGTTCCTTAAAGTATTCACGATGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * **
8408 TCCTTCGAGGAA-TTTTCGAACATTCCAAGCTC-AGGAACTCACATCATTTGGTTTAAATAGTTT
66 TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCCAAATAGTTT
* * * * ** *
8471 CTCATTTTGTAAACACCTTTTTGTCTTTAAATTAAGAACTTATTTACGTGAGAATTGTTTGTATC
130 GTCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCT-
* *
8536 A-TGGTTCTTGG-CTGAAATTCCG
194 ATTGGTTCTTGGTC-GAACTTCTG
* * ** ** *
8558 ATCTTGTCAAAGTTTTACGAGTTCTTGAATAACTTTTGTTCCTTAAAGTATTCAACACGATCCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
* * *
8623 TCCTTCGAGCAA-TTTTCTAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
66 TCCTTCGAGGAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTT
* *
8687 CTCATTTTGTAAACAGA-TTTTTGTCTTTGAATT-AAAACTTATTTAGGTGAGAATTGTTTGTCT
130 GTCATTTTGTAAACA-ACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCT
* * * * *
8750 CTTGGTTTTTGGACGAACATCCG
194 ATTGGTTCTTGGTCGAACTTCTG
* * * *
8773 AACTGGTAAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAAACGATGCAT
1 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
8838 TCCT
66 TCCT
Statistics
Matches: 4722, Mismatches: 823, Indels: 224
0.82 0.14 0.04
Matches are distributed among these distances:
207 3 0.00
208 167 0.04
209 81 0.02
210 88 0.02
211 22 0.00
212 116 0.02
213 121 0.03
214 173 0.04
215 1179 0.25
216 2733 0.58
217 39 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (216 bp):
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCGAGGAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTG
TCATTTTGTAAACAACTTTTTGTCTTTGAATTAAAAACTTATTTTGGTGAGAATTGTTTGTCTAT
TGGTTCTTGGTCGAACTTCTG
Done.