genome.fa.s11810.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011810.1 Kokia drynarioides strain JFW-HI SEQ_126805, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  218938

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1615--1774	9	17.7	9	70	18	68	35	2	2	60	1.24
1668--1765	28	3.7	26	69	23	69	34	3	2	60	1.24
1728--1773	8	5.3	9	82	17	62	30	2	0	67	1.03
1669--1774	17	6.0	16	75	18	70	33	3	1	61	1.25
6357--6481	23	5.4	22	76	16	119	11	26	22	40	1.87
6365--6508	23	6.1	24	76	15	108	11	27	22	38	1.89
6357--6480	46	2.7	46	82	9	153	10	26	22	40	1.86
10632--10661	2	15.0	2	100	0	60	50	0	0	50	1.00
13368--13419	23	2.2	23	82	3	59	50	11	11	26	1.73
14225--14316	43	2.2	42	82	3	114	30	34	14	20	1.92
20767--20791	2	12.5	2	100	0	50	48	0	0	52	1.00
26580--26622	12	3.3	12	90	9	59	11	48	0	39	1.40
26594--26652	6	9.8	6	79	0	55	10	45	3	40	1.54
26580--26673	27	3.4	27	80	8	89	12	43	3	40	1.59
26580--26655	15	5.3	15	79	9	95	11	46	2	39	1.55
29341--30778	280	5.2	281	82	4	1527	37	7	12	42	1.71
31462--32321	435	2.0	436	98	0	1668	38	8	13	39	1.76
35958--36033	38	2.0	38	100	0	152	28	10	36	23	1.88
38777--38817	21	2.0	21	85	0	55	31	17	21	29	1.96
39512--39754	90	2.7	90	81	3	256	44	16	6	31	1.74
39510--39772	45	5.8	45	75	6	219	45	16	6	31	1.72
50797--50840	21	2.1	21	95	0	79	15	18	22	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50800--50852	21	2.5	21	87	0	70	16	18	18	45	1.86
51755--51857	31	3.4	29	79	12	120	25	20	13	40	1.89
51785--51892	28	3.8	28	74	7	99	25	16	14	43	1.86
51755--51886	59	2.2	59	90	0	201	25	18	14	41	1.88
52267--52397	31	4.3	31	70	9	92	45	12	16	25	1.83
55819--55861	18	2.4	18	80	7	52	51	0	2	46	1.13
57852--57908	15	3.7	15	77	17	55	45	0	8	45	1.34
74834--74874	4	10.2	4	89	0	55	26	0	31	41	1.56
74834--74874	12	3.4	12	89	0	64	26	0	31	41	1.56
93699--93841	43	3.3	43	85	4	173	21	18	23	36	1.95
115418--115622	108	1.9	108	94	0	365	30	16	16	36	1.91
129668--129728	22	2.7	22	77	10	61	52	4	3	39	1.39
138498--138581	42	2.0	42	95	0	150	28	25	5	40	1.79
146260--146294	15	2.3	15	90	0	52	57	0	0	42	0.99
147414--147461	22	2.2	22	88	3	71	50	6	0	43	1.27
152818--152991	96	1.8	96	83	7	237	37	15	18	27	1.92
153225--153395	29	5.8	29	82	5	191	28	4	31	35	1.76
153233--153395	58	2.8	58	88	2	236	28	3	30	37	1.73
155151--155219	17	4.0	17	86	1	93	52	1	1	44	1.19
155151--155220	6	12.0	6	77	11	65	52	1	1	44	1.18
155158--155221	23	2.8	23	81	11	69	56	1	1	40	1.18
155615--156127	204	2.5	204	88	2	733	21	22	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166086--166277	29	6.5	30	83	10	236	31	3	30	34	1.75
166086--166277	59	3.2	59	88	4	280	31	3	30	34	1.75
167222--167248	3	9.0	3	100	0	54	33	0	0	66	0.92
168000--168059	11	5.4	11	80	4	66	56	0	1	41	1.09
167991--168077	17	5.0	18	78	14	67	56	1	1	41	1.14
167990--168076	6	15.0	6	74	11	56	55	1	1	42	1.15
167991--168058	23	2.9	23	80	2	73	54	0	1	44	1.09
175406--175444	10	3.9	10	96	0	69	30	46	20	2	1.64
186357--186412	2	28.0	2	92	0	94	50	46	0	3	1.19
203111--203160	20	2.4	22	80	6	59	74	2	22	2	1.03
203216--203254	15	2.6	15	88	8	53	38	0	12	48	1.42
210455--210544	31	3.0	29	80	4	90	33	7	11	47	1.68
216826--216887	30	2.1	29	87	3	88	25	8	22	43	1.80
216933--216976	18	2.5	17	76	16	54	47	11	6	34	1.66

Tables:   1

The End!