Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011812.1 Kokia drynarioides strain JFW-HI SEQ_126807, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2636
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33


Found at i:2379 original size:28 final size:28

Alignment explanation


    Indices: 2339--2394  Score: 103
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       2329 CTTTCTAGTG

                                  *     
       2339 GAGAAAGTTAACTTTCTCTATGTGGAAA
          1 GAGAAAGTTAACTTTCTCTATGGGGAAA

                                        
       2367 GAGAAAGTTAACTTTCTCTATGGGGAAA
          1 GAGAAAGTTAACTTTCTCTATGGGGAAA

       2395 ATCAAATAAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30


Consensus pattern (28 bp):   
GAGAAAGTTAACTTTCTCTATGGGGAAA
Done.