genome.fa.s11814.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011814.1 Kokia drynarioides strain JFW-HI SEQ_126809, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89926

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23--48	12	2.2	12	100	0	52	42	0	0	57	0.98
758--856	17	5.7	17	80	3	108	55	4	2	38	1.30
764--856	35	2.7	35	83	6	109	54	4	2	38	1.32
758--858	52	1.9	52	86	4	141	55	3	1	38	1.30
1940--1983	20	2.2	20	87	0	61	34	11	22	31	1.90
1952--1992	20	2.0	20	85	0	55	36	7	24	31	1.83
5819--5871	19	2.6	19	82	8	61	71	3	0	24	1.02
8868--8915	24	1.9	26	84	16	66	45	0	22	31	1.53
8978--9123	23	6.5	23	72	17	101	15	21	20	42	1.89
9044--9111	21	3.2	20	85	8	82	16	20	25	38	1.92
18493--18526	14	2.4	14	90	5	50	26	0	0	73	0.83
18684--18760	37	2.1	37	83	9	95	36	2	1	59	1.19
31395--31451	22	2.7	21	83	8	62	50	1	3	43	1.29
31700--31745	12	4.0	12	75	11	51	30	0	0	69	0.89
31700--31745	17	2.7	18	80	19	62	30	0	0	69	0.89
31708--31748	15	2.6	16	82	14	50	29	0	0	70	0.87
31702--31746	16	2.6	17	82	6	56	31	0	0	68	0.89
35801--35899	50	2.0	50	97	0	189	30	19	12	38	1.88
47192--47271	36	2.2	36	93	0	133	40	21	7	31	1.81
48393--48432	17	2.3	18	86	4	55	42	10	0	47	1.37
59860--60041	92	2.0	92	97	0	346	28	22	20	28	1.98
63610--63657	25	2.0	24	91	4	78	35	6	2	56	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64109--64191	27	3.0	27	74	17	73	63	6	0	30	1.18
64108--64181	28	2.7	27	73	19	73	62	6	0	31	1.21
64326--64413	12	7.7	12	80	10	78	70	19	4	5	1.25
64337--64401	33	2.0	33	90	3	105	69	23	4	3	1.21
64355--64424	24	2.9	24	87	4	97	72	21	1	4	1.09
64355--64424	12	5.8	12	83	3	79	72	21	1	4	1.09
64385--64510	21	5.9	21	71	11	87	69	20	4	5	1.28
64409--64513	41	2.5	41	84	4	131	67	21	5	4	1.31
64409--64510	21	4.9	20	72	10	89	67	21	5	4	1.31
64385--64509	62	2.0	65	82	7	159	68	20	4	5	1.29
67036--67072	15	2.5	15	100	0	74	18	27	16	37	1.92
67051--67203	40	3.8	40	93	4	240	23	24	7	44	1.78
70460--70549	25	3.7	24	79	5	110	21	17	30	31	1.96
70424--70541	49	2.4	49	91	0	182	22	21	27	28	1.99
70400--70541	24	5.8	24	76	2	113	23	21	26	28	1.99
71655--71859	29	6.7	32	69	16	130	29	28	15	26	1.96
71644--71859	61	3.5	60	86	5	274	29	28	15	26	1.96
71644--71877	32	7.6	32	70	12	177	30	28	14	26	1.95
71918--72061	59	2.4	58	85	3	198	34	15	15	34	1.90
74799--75235	195	2.2	194	80	6	483	28	19	25	26	1.99
75405--75440	18	1.9	19	88	5	56	13	0	27	58	1.36
77179--77526	123	2.8	122	89	4	515	38	10	8	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81946--81985	21	1.9	21	94	0	71	35	20	7	37	1.81
82726--82786	30	2.0	31	87	3	88	37	32	18	11	1.86
82789--82842	21	2.6	21	90	0	81	37	31	22	9	1.86
82759--82879	58	2.1	58	92	0	197	38	30	19	11	1.87
82810--82934	37	3.4	37	85	0	178	38	29	20	11	1.88
82789--82879	21	4.6	21	73	13	75	38	30	19	10	1.87
88774--88813	21	1.9	21	84	0	53	35	12	10	42	1.76
89526--89838	37	8.4	37	82	3	353	37	31	19	11	1.87
89526--89838	74	4.2	74	90	1	430	37	31	19	11	1.87
89526--89838	111	2.8	111	86	0	392	37	31	19	11	1.87
89769--89840	21	3.7	21	72	24	75	40	31	19	8	1.81

Tables:   1

The End!