Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011816.1 Kokia drynarioides strain JFW-HI SEQ_126811, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11932
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:11480 original size:18 final size:17

Alignment explanation


    Indices: 11453--11486  Score: 50
    Period size: 18  Copynumber: 1.9  Consensus size: 17

      11443 TGAACAACCA

                             
      11453 TTAATATCAAGCTAAAG
          1 TTAATATCAAGCTAAAG

                       *     
      11470 TTAATTATCAATCTAAA
          1 TTAA-TATCAAGCTAAA

      11487 TAAGGTTTTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    4  0.27
  18   11  0.73

ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35


Consensus pattern (17 bp):   
TTAATATCAAGCTAAAG
Done.