Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011821.1 Kokia drynarioides strain JFW-HI SEQ_126816, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7362
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34


Found at i:7300 original size:3 final size:3

Alignment explanation


    Indices: 7292--7328  Score: 74
    Period size: 3  Copynumber: 12.3  Consensus size: 3

       7282 TGTAAAGCTA

                                                             
       7292 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A

       7329 TATATATATA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
AAT

Found at i:7333 original size:2 final size:2

Alignment explanation


    Indices: 7326--7362  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       7316 AATAATAATA

                                                                   
       7326 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.