Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011825.1 Kokia drynarioides strain JFW-HI SEQ_126820, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 355046
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 83 characters in sequence are not A, C, G, or T
Found at i:597 original size:13 final size:14
Alignment explanation
Indices: 573--604 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
563 ATGATGCTAT
573 GAAAAAATGAAAAA
1 GAAAAAATGAAAAA
587 GAAAAAA-GAAAAA
1 GAAAAAATGAAAAA
600 GAAAA
1 GAAAA
605 GAATAGAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (14 bp):
GAAAAAATGAAAAA
Found at i:2850 original size:27 final size:28
Alignment explanation
Indices: 2802--2859 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
2792 CGTGCATTGG
* *
2802 AATTTAGTTTTAGCTTTAAC-TTAGATT
1 AATTTAGTTTTAGATTAAACTTTAGATT
2829 AATTTAG-TTTAGATTAATACTTTAGATT
1 AATTTAGTTTTAGATTAA-ACTTTAGATT
2857 AAT
1 AAT
2860 ATCTCTCACA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 8 0.30
27 9 0.33
28 10 0.37
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.50
Consensus pattern (28 bp):
AATTTAGTTTTAGATTAAACTTTAGATT
Found at i:2854 original size:13 final size:13
Alignment explanation
Indices: 2822--2860 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
2812 TAGCTTTAAC
*
2822 TTAGATTAATTTAGT
1 TTAGATTAA--TACT
2837 TTAGATTAATACT
1 TTAGATTAATACT
2850 TTAGATTAATA
1 TTAGATTAATA
2861 TCTCTCACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 14 0.61
15 9 0.39
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.49
Consensus pattern (13 bp):
TTAGATTAATACT
Found at i:12777 original size:94 final size:94
Alignment explanation
Indices: 12611--12931 Score: 453
Period size: 94 Copynumber: 3.4 Consensus size: 94
12601 GCATATTATC
* * *
12611 GTCACCTTAGTGTGAGCAGCATTGTATATTAGTAACAGTTATATGTACAGACACCGTATCGATGG
1 GTCAGCTTAGTGTGAGCAGCATCGTATATTAGTAACAGTTATATGTACAGATACCGTATCGATGG
* *
12676 TTGAGGTACCGCATATGTTGCGAGTCCTT
66 CTGAGGTATCGCATATGTTGCGAGTCCTT
* * * *
12705 GTCAGCTTAGTGTGAGTAGCATCGTATATTGGTAACAGTTATATGTATAGATACCGTATCGATAG
1 GTCAGCTTAGTGTGAGCAGCATCGTATATTAGTAACAGTTATATGTACAGATACCGTATCGATGG
* *
12770 CTGAGGTATCGCATATGCTGCGAGTCCTC
66 CTGAGGTATCGCATATGTTGCGAGTCCTT
* * *
12799 GTCAGCTTAGTGTGCGCAGCATCGTATACTAGTAACAGTTATATGTACAGATACCATATCGATGG
1 GTCAGCTTAGTGTGAGCAGCATCGTATATTAGTAACAGTTATATGTACAGATACCGTATCGATGG
* *
12864 CTGAGGTATTGCATATGTTGACGAGTCGTT
66 CTGAGGTATCGCATATGTTG-CGAGTCCTT
* * **
12894 GTTAACTTAGTGTGAGCAGCATCGTATATCGGTAACAG
1 GTCAGCTTAGTGTGAGCAGCATCGTATATTAGTAACAG
12932 AAATGACATT
Statistics
Matches: 198, Mismatches: 28, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
94 159 0.80
95 39 0.20
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (94 bp):
GTCAGCTTAGTGTGAGCAGCATCGTATATTAGTAACAGTTATATGTACAGATACCGTATCGATGG
CTGAGGTATCGCATATGTTGCGAGTCCTT
Found at i:16223 original size:51 final size:51
Alignment explanation
Indices: 16147--16252 Score: 212
Period size: 51 Copynumber: 2.1 Consensus size: 51
16137 CACTCAAGGC
16147 TTATATGCCTTACCTTAGCATACCTAGTATCACTTAGCTAGGCTAACCAAG
1 TTATATGCCTTACCTTAGCATACCTAGTATCACTTAGCTAGGCTAACCAAG
16198 TTATATGCCTTACCTTAGCATACCTAGTATCACTTAGCTAGGCTAACCAAG
1 TTATATGCCTTACCTTAGCATACCTAGTATCACTTAGCTAGGCTAACCAAG
16249 TTAT
1 TTAT
16253 TGTATGTCAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (51 bp):
TTATATGCCTTACCTTAGCATACCTAGTATCACTTAGCTAGGCTAACCAAG
Found at i:16233 original size:24 final size:24
Alignment explanation
Indices: 16155--16233 Score: 65
Period size: 24 Copynumber: 3.2 Consensus size: 24
16145 GCTTATATGC
16155 CTTACCTTAGCATACCTAGTATCA
1 CTTACCTTAGCATACCTAGTATCA
* *
16179 CTTAGC-TAGGC-TAACCAAGTTAT-A
1 CTTACCTTA-GCAT-ACCTAG-TATCA
16203 TGCCTTACCTTAGCATACCTAGTATCA
1 ---CTTACCTTAGCATACCTAGTATCA
16230 CTTA
1 CTTA
16234 GCTAGGCTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
23 3 0.07
24 17 0.40
25 3 0.07
26 3 0.07
27 13 0.31
28 3 0.07
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (24 bp):
CTTACCTTAGCATACCTAGTATCA
Found at i:20614 original size:6 final size:6
Alignment explanation
Indices: 20603--20632 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
20593 ATGTTGGTTG
20603 GATATT GATATT GATATT GATATT GATATT
1 GATATT GATATT GATATT GATATT GATATT
20633 ATTTTGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
GATATT
Found at i:20684 original size:32 final size:32
Alignment explanation
Indices: 20648--20718 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
20638 GTTTTGGATT
* *
20648 TTGAAATTATTATGTTTTAAAGTTGTTAGATA
1 TTGAAATTATTATGTTTCAAACTTGTTAGATA
* *
20680 TTGAATTTATTATGTTTCAAACTTGTTGGATA
1 TTGAAATTATTATGTTTCAAACTTGTTAGATA
20712 TTGAAAT
1 TTGAAAT
20719 GATTGGCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.03, G:0.15, T:0.49
Consensus pattern (32 bp):
TTGAAATTATTATGTTTCAAACTTGTTAGATA
Found at i:21689 original size:19 final size:19
Alignment explanation
Indices: 21665--21701 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
21655 TGTTTTAATG
*
21665 TGGTGTAGTACTAATTATA
1 TGGTGTAATACTAATTATA
*
21684 TGGTGTAATACTAGTTAT
1 TGGTGTAATACTAATTAT
21702 GCACTTGGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.43
Consensus pattern (19 bp):
TGGTGTAATACTAATTATA
Found at i:21841 original size:59 final size:58
Alignment explanation
Indices: 21687--21868 Score: 198
Period size: 59 Copynumber: 3.2 Consensus size: 58
21677 AATTATATGG
* * * *
21687 TGTAATACTAGTTATGCACTTGGACAATATTGCAATTATCATGTGGTGTACTACTAATT
1 TGTAATATTAGTTATGCACTTAGAC-ATATTGTAGTTATCATGTGGTGTACTACTAATT
* * * *
21746 ATGTACT-TGTA-TAAT--A-TTATTA-AT-TTGTAGTTATCATGTGATGTACTACTAATT
1 -TGTAATAT-TAGTTATGCACTTA-GACATATTGTAGTTATCATGTGGTGTACTACTAATT
21800 TGTAATATTAGTTATGCACTTAGACGATATTGTAGTTATCATGTGGTGTACTACTAATT
1 TGTAATATTAGTTATGCACTTAGAC-ATATTGTAGTTATCATGTGGTGTACTACTAATT
21859 TGTAATATTA
1 TGTAATATTA
21869 ATTGTGGTTT
Statistics
Matches: 100, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
53 7 0.07
54 31 0.31
55 2 0.02
56 4 0.04
57 5 0.05
58 2 0.02
59 42 0.42
60 7 0.07
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (58 bp):
TGTAATATTAGTTATGCACTTAGACATATTGTAGTTATCATGTGGTGTACTACTAATT
Found at i:21862 original size:29 final size:29
Alignment explanation
Indices: 21766--21862 Score: 83
Period size: 29 Copynumber: 3.3 Consensus size: 29
21756 ATAATATTAT
21766 TAATTTGTAGTTATCATGTGATGTACTAC
1 TAATTTGTAGTTATCATGTGATGTACTAC
* * * *
21795 TAATTTGTA-ATATTA-GTTATGCACTTAGAC
1 TAATTTGTAGTTATCATGTGATGTAC-T--AC
* *
21825 -GATATTGTAGTTATCATGTGGTGTACTAC
1 TAAT-TTGTAGTTATCATGTGATGTACTAC
21854 TAATTTGTA
1 TAATTTGTA
21863 ATATTAATTG
Statistics
Matches: 50, Mismatches: 11, Indels: 14
0.67 0.15 0.19
Matches are distributed among these distances:
27 7 0.14
28 5 0.10
29 18 0.36
30 9 0.18
31 5 0.10
32 6 0.12
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (29 bp):
TAATTTGTAGTTATCATGTGATGTACTAC
Found at i:22244 original size:20 final size:21
Alignment explanation
Indices: 22210--22251 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
22200 CAAACACCAG
* *
22210 AAAATATTAACTTTTCTAGAA
1 AAAAAATTAACTTTTCCAGAA
22231 AAAAAATTAA-TTTTCCAGAA
1 AAAAAATTAACTTTTCCAGAA
22251 A
1 A
22252 TCATTTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.52, C:0.10, G:0.05, T:0.33
Consensus pattern (21 bp):
AAAAAATTAACTTTTCCAGAA
Found at i:24067 original size:29 final size:29
Alignment explanation
Indices: 24004--24069 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 29
23994 GTTAATCCTC
24004 CAACTTTTATTTTTAAAAATTTAGTCTCT
1 CAACTTTTATTTTTAAAAATTTAGTCTCT
24033 CAAACTTTTATTTTTAAAAATTTAGTCTCT
1 C-AACTTTTATTTTTAAAAATTTAGTCTCT
24063 CAACTTT
1 CAACTTT
24070 ATGGATTTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 7 0.19
30 29 0.81
ACGTcount: A:0.32, C:0.15, G:0.03, T:0.50
Consensus pattern (29 bp):
CAACTTTTATTTTTAAAAATTTAGTCTCT
Found at i:24081 original size:29 final size:30
Alignment explanation
Indices: 24005--24083 Score: 108
Period size: 30 Copynumber: 2.6 Consensus size: 30
23995 TTAATCCTCC
*
24005 AACTTTTATTTTTAAAAATTTAGTCTCTCA
1 AACTTTTATATTTAAAAATTTAGTCTCTCA
*
24035 AACTTTTATTTTTAAAAATTTAGTCTCTC-
1 AACTTTTATATTTAAAAATTTAGTCTCTCA
24064 AAC-TTTATGGATTTAAAAAT
1 AACTTTTAT--ATTTAAAAAT
24084 CTATTTTCAA
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
28 5 0.11
29 3 0.07
30 38 0.83
ACGTcount: A:0.35, C:0.11, G:0.05, T:0.48
Consensus pattern (30 bp):
AACTTTTATATTTAAAAATTTAGTCTCTCA
Found at i:24510 original size:14 final size:14
Alignment explanation
Indices: 24491--24517 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24481 CTATTCTTTA
24491 AATAATCACTTAAT
1 AATAATCACTTAAT
24505 AATAATCACTTAA
1 AATAATCACTTAA
24518 ACTTTTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (14 bp):
AATAATCACTTAAT
Found at i:29346 original size:23 final size:23
Alignment explanation
Indices: 29316--29645 Score: 462
Period size: 23 Copynumber: 14.3 Consensus size: 23
29306 CTTATATCTA
29316 TGCTTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
* *
29339 TGCTTAAATATTAATATGATTTA
1 TGCTTAAATATTAATGTGATTTG
*
29362 TGATTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
* *
29385 TGCTTAAGTATTAATGTGATTTA
1 TGCTTAAATATTAATGTGATTTG
*
29408 TGCTTAAATATTAATATGATTTG
1 TGCTTAAATATTAATGTGATTTG
*
29431 TGCTCAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
* *
29454 TTCTTAAATATTAATATGATTTG
1 TGCTTAAATATTAATGTGATTTG
* * *
29477 TGATCAAATATTAATGTGATTTA
1 TGCTTAAATATTAATGTGATTTG
29500 TGCTTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
** * *
29523 TGCTTAAATAAAAATATGATTTA
1 TGCTTAAATATTAATGTGATTTG
* *
29546 TGATTAAATATTAATATGATTTG
1 TGCTTAAATATTAATGTGATTTG
* *
29569 TGCTCAAATATTAATGTGATTTA
1 TGCTTAAATATTAATGTGATTTG
*
29592 TGCTTAAATATTAATGTGATTTA
1 TGCTTAAATATTAATGTGATTTG
*
29615 TGGTTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
29638 TGCTTAAA
1 TGCTTAAA
29646 GAATTAAGAT
Statistics
Matches: 267, Mismatches: 40, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 267 1.00
ACGTcount: A:0.35, C:0.04, G:0.14, T:0.46
Consensus pattern (23 bp):
TGCTTAAATATTAATGTGATTTG
Found at i:36034 original size:5 final size:5
Alignment explanation
Indices: 36020--36052 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
36010 ATATAAATAT
36020 TTTTC TTTTTC TTTTC TTTTC TTTTC TTTTC TT
1 TTTTC -TTTTC TTTTC TTTTC TTTTC TTTTC TT
36053 CGTCTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:36046 original size:15 final size:16
Alignment explanation
Indices: 36020--36065 Score: 60
Period size: 15 Copynumber: 2.9 Consensus size: 16
36010 ATATAAATAT
36020 TTTTCTTTTTCTTTTC
1 TTTTCTTTTTCTTTTC
36036 TTTTC-TTTTCTTTTC
1 TTTTCTTTTTCTTTTC
*
36051 TTCGTCTTTTT-TTTT
1 TT-TTCTTTTTCTTTT
36066 GTGAGTGAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 12 0.44
16 11 0.41
17 4 0.15
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTCTTTTTCTTTTC
Found at i:36656 original size:17 final size:17
Alignment explanation
Indices: 36611--36658 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
36601 TGACAAATGG
* *
36611 AAATGTAATGATAATTC
1 AAATGTAATGACAATTA
* *
36628 AAATGCAGTGACAATTA
1 AAATGTAATGACAATTA
36645 AAATGTAATGACAA
1 AAATGTAATGACAA
36659 AGGAAATGTG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.50, C:0.08, G:0.15, T:0.27
Consensus pattern (17 bp):
AAATGTAATGACAATTA
Found at i:38711 original size:16 final size:16
Alignment explanation
Indices: 38690--38720 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
38680 ATAATGTGAA
38690 AATAAAGATAAAATGT
1 AATAAAGATAAAATGT
*
38706 AATAAAGGTAAAATG
1 AATAAAGATAAAATG
38721 GGATTCATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (16 bp):
AATAAAGATAAAATGT
Found at i:40467 original size:42 final size:42
Alignment explanation
Indices: 40397--40498 Score: 141
Period size: 42 Copynumber: 2.4 Consensus size: 42
40387 TGTAAATTCT
* * *
40397 CCACAGCTCGTGTGAGAAGCGTTATGTAGCTACCGTCTCGAC
1 CCACAGCTCGTGTGAGCAGCATCATGTAGCTACCGTCTCGAC
* * *
40439 CCACAGCTCGTGTGAGCAGCATCGTGTAGCTATCTTCTCGAC
1 CCACAGCTCGTGTGAGCAGCATCATGTAGCTACCGTCTCGAC
*
40481 CCATAGCTCGTGTGAGCA
1 CCACAGCTCGTGTGAGCA
40499 TGCCCACTTC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.25
Consensus pattern (42 bp):
CCACAGCTCGTGTGAGCAGCATCATGTAGCTACCGTCTCGAC
Found at i:47013 original size:21 final size:21
Alignment explanation
Indices: 46988--47062 Score: 89
Period size: 21 Copynumber: 3.6 Consensus size: 21
46978 ACCTACAAAA
46988 CATTATATTTGTAACTCTCCT
1 CATTATATTTGTAACTCTCCT
* *
47009 CATTATGTTTATAACTCTCCT
1 CATTATATTTGTAACTCTCCT
* *
47030 CA-TAAATTTTGTAACTCTCAT
1 CATTATA-TTTGTAACTCTCCT
*
47051 CATTATGTTTGT
1 CATTATATTTGT
47063 TTTAAATTTC
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 2 0.05
21 40 0.91
22 2 0.05
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.48
Consensus pattern (21 bp):
CATTATATTTGTAACTCTCCT
Found at i:58167 original size:21 final size:21
Alignment explanation
Indices: 58141--58211 Score: 99
Period size: 21 Copynumber: 3.4 Consensus size: 21
58131 GGAAACAACT
*
58141 ATGTTTGTAACTCTCCTTATA
1 ATGTTTGTAACTCTCCTCATA
58162 ATGTTTGTAACTCTCCTCATA
1 ATGTTTGTAACTCTCCTCATA
* *
58183 A-GTTTTGTAACTCTCATCATT
1 ATG-TTTGTAACTCTCCTCATA
58204 ATGTTTGT
1 ATGTTTGT
58212 TTTAAATTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
20 1 0.02
21 43 0.96
22 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.11, T:0.48
Consensus pattern (21 bp):
ATGTTTGTAACTCTCCTCATA
Found at i:61534 original size:20 final size:20
Alignment explanation
Indices: 61488--61590 Score: 75
Period size: 20 Copynumber: 5.0 Consensus size: 20
61478 AGTTTGAAAC
*
61488 AATTTTAAAATCAAGTTAAAAT
1 AATTTT-AAA-CAAGTCAAAAT
* *
61510 GATTTTAAACATGTCAAAAT
1 AATTTTAAACAAGTCAAAAT
*
61530 AA-TTTGAACTAAGTCAAAAT
1 AATTTTAAAC-AAGTCAAAAT
* **
61550 CATTTT-AACACTTCAAAAT
1 AATTTTAAACAAGTCAAAAT
**
61569 GTTTTTCAAACAAGTCAAAAT
1 AATTTT-AAACAAGTCAAAAT
61590 A
1 A
61591 GCTCAAAACC
Statistics
Matches: 63, Mismatches: 14, Indels: 9
0.73 0.16 0.10
Matches are distributed among these distances:
19 18 0.29
20 23 0.37
21 17 0.27
22 5 0.08
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.34
Consensus pattern (20 bp):
AATTTTAAACAAGTCAAAAT
Found at i:61864 original size:22 final size:22
Alignment explanation
Indices: 61807--61851 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
61797 CACAAACCCT
61807 AAGAGGTATCGATACCTTTTGG
1 AAGAGGTATCGATACCTTTTGG
61829 AAGAGGTATCGATACCTTTTGG
1 AAGAGGTATCGATACCTTTTGG
61851 A
1 A
61852 GAAGGTACTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (22 bp):
AAGAGGTATCGATACCTTTTGG
Found at i:67959 original size:3 final size:3
Alignment explanation
Indices: 67951--67987 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
67941 AGAGGTGGGA
67951 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
67988 GGTGATAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:70671 original size:2 final size:2
Alignment explanation
Indices: 70666--70694 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
70656 TCTCTCTCTC
70666 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70695 TGGGTAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73595 original size:38 final size:38
Alignment explanation
Indices: 73516--73692 Score: 141
Period size: 38 Copynumber: 4.7 Consensus size: 38
73506 AGAAGCTTGT
* * * * *
73516 TAGGCATTAAGCTCGATAACCACTAG-CACGAAGCCTAC
1 TAGGCACTAAGCTCGATAAACACCAGACA-TAAACCTAC
* *
73554 TAGGCACTAAGCTCTATAAACACCAGCACAT-AACCTGC
1 TAGGCACTAAGCTCGATAAACACCAG-ACATAAACCTAC
*
73592 TAGGCACAAAGC-CTGATAAACACC-GACATAAAGCCTAC
1 TAGGCACTAAGCTC-GATAAACACCAGACATAAA-CCTAC
* * * * *
73630 TAGGCACAAAGCCCGATAAACA-CTGACATAAAACTTGC
1 TAGGCACTAAGCTCGATAAACACCAGACAT-AAACCTAC
73668 TAGGCA-TAAAGCTCGATAAACACCA
1 TAGGCACT-AAGCTCGATAAACACCA
73693 TACAATCACT
Statistics
Matches: 114, Mismatches: 15, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
36 4 0.04
37 5 0.04
38 98 0.86
39 5 0.04
40 2 0.02
ACGTcount: A:0.40, C:0.28, G:0.16, T:0.16
Consensus pattern (38 bp):
TAGGCACTAAGCTCGATAAACACCAGACATAAACCTAC
Found at i:73649 original size:76 final size:75
Alignment explanation
Indices: 73546--73691 Score: 188
Period size: 76 Copynumber: 1.9 Consensus size: 75
73536 CACTAGCACG
* * *
73546 AAGCCTACTAGGCACTAAGCTCTATAAACACCAGCACAT-AACCTGCTAGGCACAAAGC-CTGAT
1 AAGCCTACTAGGCACAAAGCCCGATAAACA-CAG-ACATAAACCTGCTAGGCACAAAGCTC-GAT
73609 AAACACCGACATA
63 AAACACCGACATA
* * *
73622 AAGCCTACTAGGCACAAAGCCCGATAAACACTGACATAAAACTTGCTAGGCATAAAGCTCGATAA
1 AAGCCTACTAGGCACAAAGCCCGATAAACACAGACAT-AAACCTGCTAGGCACAAAGCTCGATAA
73687 ACACC
65 ACACC
73692 ATACAATCAC
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
74 4 0.07
75 2 0.03
76 54 0.89
77 1 0.02
ACGTcount: A:0.40, C:0.29, G:0.15, T:0.16
Consensus pattern (75 bp):
AAGCCTACTAGGCACAAAGCCCGATAAACACAGACATAAACCTGCTAGGCACAAAGCTCGATAAA
CACCGACATA
Found at i:87744 original size:21 final size:22
Alignment explanation
Indices: 87708--87750 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
87698 ACATTTTGTC
87708 TTACTCATACTTTTTTATTTTT
1 TTACTCATACTTTTTTATTTTT
* *
87730 TTACTCAT-TTTTTTTCTTTTT
1 TTACTCATACTTTTTTATTTTT
87751 CTTTTTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (22 bp):
TTACTCATACTTTTTTATTTTT
Found at i:108174 original size:15 final size:15
Alignment explanation
Indices: 108156--108195 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
108146 AATAGAAAAG
108156 AAGAAAAAGAAAACA
1 AAGAAAAAGAAAACA
108171 AAGAAAACA-AAAACA
1 AAGAAAA-AGAAAACA
108186 AAGAAAAAGA
1 AAGAAAAAGA
108196 GAAAAGCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 1 0.04
15 21 0.91
16 1 0.04
ACGTcount: A:0.80, C:0.07, G:0.12, T:0.00
Consensus pattern (15 bp):
AAGAAAAAGAAAACA
Found at i:121006 original size:52 final size:52
Alignment explanation
Indices: 120926--121118 Score: 244
Period size: 52 Copynumber: 3.7 Consensus size: 52
120916 TTTTCACTTC
120926 ATTCATATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAGGG
1 ATTCATATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAGGG
* * * * * **
120978 ATTCATATACTCACGATAACACAAAGTCATCAAACCTCTTAATCCATAAATG
1 ATTCATATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAGGG
* * * *
121030 ATTCATATACACACGATGACACATAGCCA-CCGAACCTCATATTCCGTAAGGG
1 ATTCATATACTCACGATGACACATAGTCATCAG-ACCTCATAATCCGTAAGGG
* * *
121082 ATTCATATACTCATGATGACACAGAGTCATCGGACCT
1 ATTCATATACTCACGATGACACATAGTCATCAGACCT
121119 TTTCATATAT
Statistics
Matches: 116, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
51 1 0.01
52 113 0.97
53 2 0.02
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (52 bp):
ATTCATATACTCACGATGACACATAGTCATCAGACCTCATAATCCGTAAGGG
Found at i:129579 original size:17 final size:18
Alignment explanation
Indices: 129559--129596 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
129549 TTTATATATT
129559 ATATTA-ATTATTATAAA
1 ATATTACATTATTATAAA
*
129576 ATATTATCTTTATTATAAA
1 ATATTA-CATTATTATAAA
129595 AT
1 AT
129597 TTTGATTGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
19 12 0.67
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (18 bp):
ATATTACATTATTATAAA
Found at i:129782 original size:15 final size:15
Alignment explanation
Indices: 129751--129781 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
129741 ATTTAAAAAT
129751 AATTAATTTTTCTAA
1 AATTAATTTTTCTAA
129766 AATTAATTTTT-TAA
1 AATTAATTTTTCTAA
129780 AA
1 AA
129782 AGTCAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (15 bp):
AATTAATTTTTCTAA
Found at i:130322 original size:23 final size:23
Alignment explanation
Indices: 130256--130324 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
130246 TTTAATTTTC
*
130256 ACGAACATGTTCATTTAAC-TTAA
1 ACGAACATGTTCA-TGAACATTAA
* * * *
130279 TCGAACATGTCCACGAGCATTAA
1 ACGAACATGTTCATGAACATTAA
*
130302 ACGAACATGTTTATGAACATTAA
1 ACGAACATGTTCATGAACATTAA
130325 TTTAACATAT
Statistics
Matches: 35, Mismatches: 10, Indels: 2
0.74 0.21 0.04
Matches are distributed among these distances:
22 2 0.06
23 33 0.94
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (23 bp):
ACGAACATGTTCATGAACATTAA
Found at i:136717 original size:24 final size:24
Alignment explanation
Indices: 136690--136758 Score: 120
Period size: 24 Copynumber: 2.9 Consensus size: 24
136680 AGTTTGACTC
*
136690 AAACAAATAAATAAAGTTTAATTG
1 AAACAAATAAACAAAGTTTAATTG
136714 AAACAAATAAACAAAGTTTAATTG
1 AAACAAATAAACAAAGTTTAATTG
*
136738 AAACAAATAAACAGAGTTTAA
1 AAACAAATAAACAAAGTTTAA
136759 CTAAAAGATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.25
Consensus pattern (24 bp):
AAACAAATAAACAAAGTTTAATTG
Found at i:138655 original size:24 final size:24
Alignment explanation
Indices: 138574--138660 Score: 122
Period size: 24 Copynumber: 3.6 Consensus size: 24
138564 TAGACTAATA
138574 AGAGTTTAACTT-AAACAAATAAAC
1 AGAGTTTAA-TTGAAACAAATAAAC
* *
138598 AGAGTTTAACTGAAACAAATAAAT
1 AGAGTTTAATTGAAACAAATAAAC
* *
138622 AAAATTTAATTGAAACAAATAAAC
1 AGAGTTTAATTGAAACAAATAAAC
138646 AGAGTTTAATTGAAA
1 AGAGTTTAATTGAAA
138661 GATTATTTCT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
23 1 0.02
24 53 0.98
ACGTcount: A:0.55, C:0.08, G:0.10, T:0.26
Consensus pattern (24 bp):
AGAGTTTAATTGAAACAAATAAAC
Found at i:140147 original size:19 final size:19
Alignment explanation
Indices: 140112--140148 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
140102 TAATCTAAGG
*
140112 ATTAATAAAATAACATTTA
1 ATTAATAAAACAACATTTA
*
140131 ATTAATAAAACATCATTT
1 ATTAATAAAACAACATTT
140149 TATACTCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTAATAAAACAACATTTA
Found at i:140605 original size:35 final size:35
Alignment explanation
Indices: 140555--140795 Score: 115
Period size: 35 Copynumber: 6.9 Consensus size: 35
140545 ATTTGTTCCT
140555 ATTTTGATTCGCATGTTAAGCATGCCACTATTCTA
1 ATTTTGATTCGCATGTTAAGCATGCCACTATTCTA
140590 ATTTTGATTAC-CATGTTAAGCATG-C-C-A-T-T-
1 ATTTTGATT-CGCATGTTAAGCATGCCACTATTCTA
* ** ** * * *
140619 ATTCTGATTAACATGTTAAGCATGTGATTATTTTG
1 ATTTTGATTCGCATGTTAAGCATGCCACTATTCTA
* * *
140654 ATTTTGATTCTGATTCCCATGTTAAGCATTCCATTATACTGA
1 ATTTTGATTC-G-----CATGTTAAGCATGCCACTATTCT-A
* * * * *
140696 A-TATGATTTGCATGTTAAGCATTCCATTATACTA
1 ATTTTGATTCGCATGTTAAGCATGCCACTATTCTA
* * * * *
140730 ATTCTGATTCGAATGTTAAGCATGCCGCTAGAT-TG
1 ATTTTGATTCGCATGTTAAGCATGCCACTA-TTCTA
*
140765 ATTCTT-ATTCGCATGTAAAGCATGCCTACTA
1 ATT-TTGATTCGCATGTTAAGCATGCC-ACTA
140796 AAAATTTTGT
Statistics
Matches: 159, Mismatches: 28, Indels: 37
0.71 0.12 0.17
Matches are distributed among these distances:
29 21 0.13
30 1 0.01
31 1 0.01
32 2 0.01
33 2 0.01
34 4 0.03
35 97 0.61
36 5 0.03
40 1 0.01
41 24 0.15
42 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (35 bp):
ATTTTGATTCGCATGTTAAGCATGCCACTATTCTA
Found at i:140627 original size:29 final size:29
Alignment explanation
Indices: 140594--140656 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
140584 ATTCTAATTT
*
140594 TGATTACCATGTTAAGCATGCCATTATTC
1 TGATTAACATGTTAAGCATGCCATTATTC
** *
140623 TGATTAACATGTTAAGCATGTGATTATTT
1 TGATTAACATGTTAAGCATGCCATTATTC
140652 TGATT
1 TGATT
140657 TTGATTCTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.43
Consensus pattern (29 bp):
TGATTAACATGTTAAGCATGCCATTATTC
Found at i:147020 original size:17 final size:18
Alignment explanation
Indices: 146990--147023 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
146980 GCTTCAGGGA
*
146990 ATATGCCAAGATCTTCAC
1 ATATGCCAAAATCTTCAC
147008 ATAT-CCAAAATCTTCA
1 ATATGCCAAAATCTTCA
147024 TAATTGTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.26, G:0.06, T:0.29
Consensus pattern (18 bp):
ATATGCCAAAATCTTCAC
Found at i:148333 original size:14 final size:14
Alignment explanation
Indices: 148310--148342 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
148300 TGGTAAGTTG
148310 TTTTTAATTTTT-T
1 TTTTTAATTTTTAT
148323 TTTTGTAATTTTTAT
1 TTTT-TAATTTTTAT
148338 TTTTT
1 TTTTT
148343 TGAAATTCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.22
14 9 0.50
15 5 0.28
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (14 bp):
TTTTTAATTTTTAT
Found at i:163813 original size:39 final size:39
Alignment explanation
Indices: 163769--163860 Score: 105
Period size: 39 Copynumber: 2.3 Consensus size: 39
163759 TGATTATACG
* **
163769 GATGAACATTGGGCGCAAACTAATTACATT-GGACGTTCC
1 GATGAACACTGGGCGCAAACTAATTAC-TTCAAACGTTCC
**
163808 GATGAATGCTGGGCGCAAACTAATTACTTCAAACGTTCC
1 GATGAACACTGGGCGCAAACTAATTACTTCAAACGTTCC
*
163847 GATGAGGCACTGGG
1 GATGA-ACACTGGG
163861 TACTAAATGA
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
38 2 0.05
39 36 0.84
40 5 0.12
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
GATGAACACTGGGCGCAAACTAATTACTTCAAACGTTCC
Found at i:164060 original size:7 final size:7
Alignment explanation
Indices: 164048--164080 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
164038 ATTTTATATG
164048 GAATTTT
1 GAATTTT
164055 GAATTTT
1 GAATTTT
164062 GAATTTT
1 GAATTTT
164069 -AATTATT
1 GAATT-TT
164076 GAATT
1 GAATT
164081 AAAAGTTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 4 0.17
7 16 0.67
8 4 0.17
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (7 bp):
GAATTTT
Found at i:164473 original size:20 final size:20
Alignment explanation
Indices: 164448--164495 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
164438 AATTTAATAT
*
164448 AATTGAAGGACCACTTATGA
1 AATTGAAGGACCAATTATGA
164468 AATTGAAGGACCAATTATGA
1 AATTGAAGGACCAATTATGA
*
164488 TATTGAAG
1 AATTGAAG
164496 CCTCTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (20 bp):
AATTGAAGGACCAATTATGA
Found at i:165652 original size:94 final size:94
Alignment explanation
Indices: 165512--165866 Score: 457
Period size: 94 Copynumber: 3.8 Consensus size: 94
165502 TTCATTAGGG
* * ** * * ** *
165512 AACATTTATATGTACAAATACCATATTGATAACTGAGGTACTGCATATGTTATGAGTCCTCGTCA
1 AACAGTTATATGTACAGATACTGTATTGATGACTGAGGTACCGCATATGTTGCGAGTCCTCATCA
*
165577 GCTTAGTGTGAGCAACATCGTATACTGGT
66 ACTTAGTGTGAGCAACATCGTATACTGGT
* ** * *
165606 AACAGTTATATGTACAGATACTGTATTAATGGTTGAGGTACCGCATATGTTGCAAGTCCTCGTCA
1 AACAGTTATATGTACAGATACTGTATTGATGACTGAGGTACCGCATATGTTGCGAGTCCTCATCA
*
165671 ACTTATTGTGAGCAACATCGTATACTGGT
66 ACTTAGTGTGAGCAACATCGTATACTGGT
*
165700 AACAGTTATATGTAC-GTATACTGTATCGATGACTGAGGTACCGCATATGTTGCGAGTCCTCATC
1 AACAGTTATATGTACAG-ATACTGTATTGATGACTGAGGTACCGCATATGTTGCGAGTCCTCATC
* *
165764 AACTTAGTGTGAACAACATCGTATACTAGT
65 AACTTAGTGTGAGCAACATCGTATACTGGT
* * * *
165794 AACA--T-TATGTGCAGATATTGTATTGATGCCTGAGGTACCGCATATGTTGTGAGTCCTCATCA
1 AACAGTTATATGTACAGATACTGTATTGATGACTGAGGTACCGCATATGTTGCGAGTCCTCATCA
*
165856 GCTTAGTGTGA
66 ACTTAGTGTGA
165867 CTAGCACCTT
Statistics
Matches: 230, Mismatches: 29, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
91 60 0.26
92 2 0.01
93 1 0.00
94 167 0.73
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (94 bp):
AACAGTTATATGTACAGATACTGTATTGATGACTGAGGTACCGCATATGTTGCGAGTCCTCATCA
ACTTAGTGTGAGCAACATCGTATACTGGT
Found at i:166673 original size:21 final size:21
Alignment explanation
Indices: 166649--166705 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
166639 TCTAGAGTTT
166649 ATTGTATCGGTAGAAGTAATA
1 ATTGTATCGGTAGAAGTAATA
* *
166670 ATTGTATCGGTAGTAGTCATA
1 ATTGTATCGGTAGAAGTAATA
*
166691 CTTGTATCGGTAGAA
1 ATTGTATCGGTAGAA
166706 CCTTCCTAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.35
Consensus pattern (21 bp):
ATTGTATCGGTAGAAGTAATA
Found at i:173277 original size:20 final size:20
Alignment explanation
Indices: 173241--173282 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
173231 AATAGTCAAA
* *
173241 GTCAACGGGTCGATCAATAG
1 GTCAACGAGTCGATCAACAG
173261 GTCAACGAGTC-AGTCAACAG
1 GTCAACGAGTCGA-TCAACAG
173281 GT
1 GT
173283 TTGGTCAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (20 bp):
GTCAACGAGTCGATCAACAG
Found at i:174045 original size:20 final size:20
Alignment explanation
Indices: 174020--174057 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
174010 ACCCACTAAA
*
174020 CAATTTAATCCCAAAATTCC
1 CAATTTAACCCCAAAATTCC
*
174040 CAATTTAGCCCCAAAATT
1 CAATTTAACCCCAAAATT
174058 TTAATTAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.29, G:0.03, T:0.29
Consensus pattern (20 bp):
CAATTTAACCCCAAAATTCC
Found at i:175358 original size:12 final size:12
Alignment explanation
Indices: 175322--175357 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
175312 CAAGTTTTAC
175322 TATTATTATTTT
1 TATTATTATTTT
175334 TATTATTATTTT
1 TATTATTATTTT
175346 TATTA-TATTTT
1 TATTATTATTTT
175357 T
1 T
175358 TCCACTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 7 0.29
12 17 0.71
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (12 bp):
TATTATTATTTT
Found at i:180128 original size:18 final size:18
Alignment explanation
Indices: 180105--180149 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
180095 TCATGAATTC
*
180105 ACTCAAGCTTAGGCGATA
1 ACTCAAGCTCAGGCGATA
180123 ACTCAAGCTCAGGCGATA
1 ACTCAAGCTCAGGCGATA
180141 ACTCAAGCT
1 ACTCAAGCT
180150 GATAGGCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (18 bp):
ACTCAAGCTCAGGCGATA
Found at i:183067 original size:3 final size:3
Alignment explanation
Indices: 183059--183116 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
183049 CCCACAAGTT
183059 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
183107 TTA TTA TTA T
1 TTA TTA TTA T
183117 ATTTTTTCAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:184821 original size:20 final size:20
Alignment explanation
Indices: 184792--184829 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
184782 GGGTTTTTCG
*
184792 AAAAAATCAACGGTCAACCT
1 AAAAAATCAACGATCAACCT
*
184812 AAAAAGTCAACGATCAAC
1 AAAAAATCAACGATCAAC
184830 GGTCAACTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.24, G:0.11, T:0.13
Consensus pattern (20 bp):
AAAAAATCAACGATCAACCT
Found at i:184828 original size:7 final size:7
Alignment explanation
Indices: 184817--184855 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
184807 AACCTAAAAA
184817 GTCAACG
1 GTCAACG
*
184824 ATCAACG
1 GTCAACG
*
184831 GTCAACT
1 GTCAACG
184838 GTCAACG
1 GTCAACG
184845 GTCAACG
1 GTCAACG
184852 GTCA
1 GTCA
184856 GGCTCGGTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.31, C:0.28, G:0.23, T:0.18
Consensus pattern (7 bp):
GTCAACG
Found at i:184836 original size:14 final size:13
Alignment explanation
Indices: 184798--184851 Score: 54
Period size: 14 Copynumber: 4.0 Consensus size: 13
184788 TTCGAAAAAA
*
184798 TCAACGGTCAACC
1 TCAACGGTCAACG
* **
184811 TAAAAAGTCAACG
1 TCAACGGTCAACG
184824 ATCAACGGTCAACTG
1 -TCAACGGTCAAC-G
184839 TCAACGGTCAACG
1 TCAACGGTCAACG
184852 GTCAGGCTCG
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
13 10 0.31
14 21 0.66
15 1 0.03
ACGTcount: A:0.37, C:0.28, G:0.19, T:0.17
Consensus pattern (13 bp):
TCAACGGTCAACG
Found at i:184934 original size:21 final size:21
Alignment explanation
Indices: 184897--184936 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
184887 TTGGGTCTAA
*
184897 GGTTTGGTGATTTGGTTTTAG
1 GGTTTGGTGATTGGGTTTTAG
184918 GGTTTGG-GTATTGGGTTTT
1 GGTTTGGTG-ATTGGGTTTT
184937 CATGGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.07, C:0.00, G:0.40, T:0.53
Consensus pattern (21 bp):
GGTTTGGTGATTGGGTTTTAG
Found at i:191483 original size:35 final size:35
Alignment explanation
Indices: 191444--191595 Score: 128
Period size: 35 Copynumber: 4.3 Consensus size: 35
191434 TGATTCACGT
* *
191444 GTTAAGCACGCCATTATTGTGATTCTGATTTGCAC
1 GTTAAGCATGCCATTATTCTGATTCTGATTTGCAC
* * * * *
191479 GTTAAGCATACTATTATTTTTATTCTGATTTGCAT
1 GTTAAGCATGCCATTATTCTGATTCTGATTTGCAC
* * *
191514 GTTAAGCATGCCATTATACTGATTCTAATTCGCATC
1 GTTAAGCATGCCATTATTCTGATTCTGATTTGCA-C
* * * * *
191550 -TTAAACATGCTACTAGAT-TGATTCTGATTTGCAT
1 GTTAAGCATGCCATTA-TTCTGATTCTGATTTGCAC
*
191584 GTAAAGCATGCC
1 GTTAAGCATGCC
191596 TATTGAAAAT
Statistics
Matches: 89, Mismatches: 25, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (35 bp):
GTTAAGCATGCCATTATTCTGATTCTGATTTGCAC
Found at i:191527 original size:70 final size:70
Alignment explanation
Indices: 191443--191595 Score: 182
Period size: 70 Copynumber: 2.2 Consensus size: 70
191433 TTGATTCACG
* ** * * * * ** *
191443 TGTTAAGCACGCCATTATTGTGATTCTGATTTGCA-CGTTAAGCATACTATTATTTTTATTCTGA
1 TGTTAAGCATGCCATTATACTGATTCTAATTCGCATC-TTAAACATACTACTAGATTGATTCTGA
191507 TTTGCA
65 TTTGCA
*
191513 TGTTAAGCATGCCATTATACTGATTCTAATTCGCATCTTAAACATGCTACTAGATTGATTCTGAT
1 TGTTAAGCATGCCATTATACTGATTCTAATTCGCATCTTAAACATACTACTAGATTGATTCTGAT
191578 TTGCA
66 TTGCA
*
191583 TGTAAAGCATGCC
1 TGTTAAGCATGCC
191596 TATTGAAAAT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
70 69 0.99
71 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (70 bp):
TGTTAAGCATGCCATTATACTGATTCTAATTCGCATCTTAAACATACTACTAGATTGATTCTGAT
TTGCA
Found at i:200501 original size:10 final size:9
Alignment explanation
Indices: 200475--200500 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
200465 CTCAAGCTCT
200475 TTGTTTTTC
1 TTGTTTTTC
200484 TTGTTTTTC
1 TTGTTTTTC
200493 TTGTTTTT
1 TTGTTTTT
200501 TTTACTTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.08, G:0.12, T:0.81
Consensus pattern (9 bp):
TTGTTTTTC
Found at i:205469 original size:23 final size:23
Alignment explanation
Indices: 205439--205484 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
205429 ATTAACAAAG
205439 ATAGAAAAATCATCCATGAAAAC
1 ATAGAAAAATCATCCATGAAAAC
205462 ATAGAAAAATCATCCATGAAAAC
1 ATAGAAAAATCATCCATGAAAAC
205485 CTCAACAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.17, G:0.09, T:0.17
Consensus pattern (23 bp):
ATAGAAAAATCATCCATGAAAAC
Found at i:211250 original size:63 final size:63
Alignment explanation
Indices: 211151--211276 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
211141 AAAAGGTGGG
211151 TATAGAAGAAAACCTATATGATAATGGCAGTTTTAGAGTGAGATATATGAAGAGTTAAATGGT
1 TATAGAAGAAAACCTATATGATAATGGCAGTTTTAGAGTGAGATATATGAAGAGTTAAATGGT
*
211214 TATAGAAGGAAACCTATATGATAATGGCAGTTTTAGAGTGAGATATATGAAGAGTTAAATGGT
1 TATAGAAGAAAACCTATATGATAATGGCAGTTTTAGAGTGAGATATATGAAGAGTTAAATGGT
211277 AATGGATAGT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (63 bp):
TATAGAAGAAAACCTATATGATAATGGCAGTTTTAGAGTGAGATATATGAAGAGTTAAATGGT
Found at i:213291 original size:14 final size:14
Alignment explanation
Indices: 213272--213306 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
213262 TTGCTACTAT
213272 TTACTATTATGTTG
1 TTACTATTATGTTG
*
213286 TTACTATTTTGTTG
1 TTACTATTATGTTG
213300 TTA-TATT
1 TTACTATT
213307 GTATAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.20, C:0.06, G:0.11, T:0.63
Consensus pattern (14 bp):
TTACTATTATGTTG
Found at i:215652 original size:96 final size:96
Alignment explanation
Indices: 215488--215681 Score: 379
Period size: 96 Copynumber: 2.0 Consensus size: 96
215478 AATGGTGTAT
*
215488 CAAGAACCACTGCATAATGAGGAAAAAGAAGAAAGAGGGAAAATGAGAAACCATCATCTTATTTA
1 CAAGAACCACTGCATAATGAGGAAAAAGAAGAAAGAGGGAAAATGAGAAACCATCATCTTAATTA
215553 TTTTGATACTCTGTACCCTTAGTCACCGATC
66 TTTTGATACTCTGTACCCTTAGTCACCGATC
215584 CAAGAACCACTGCATAATGAGGAAAAAGAAGAAAGAGGGAAAATGAGAAACCATCATCTTAATTA
1 CAAGAACCACTGCATAATGAGGAAAAAGAAGAAAGAGGGAAAATGAGAAACCATCATCTTAATTA
215649 TTTTGATACTCTGTACCCTTAGTCACCGATC
66 TTTTGATACTCTGTACCCTTAGTCACCGATC
215680 CA
1 CA
215682 TGTAAGGACA
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 97 1.00
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (96 bp):
CAAGAACCACTGCATAATGAGGAAAAAGAAGAAAGAGGGAAAATGAGAAACCATCATCTTAATTA
TTTTGATACTCTGTACCCTTAGTCACCGATC
Found at i:221213 original size:239 final size:239
Alignment explanation
Indices: 220794--221270 Score: 891
Period size: 239 Copynumber: 2.0 Consensus size: 239
220784 CTACTAGCAG
220794 AAATTGGAAAGGTGGCAACTAAACCTTGTATTACTCTAATGGTTCCCAATGTACATCTTACAAAA
1 AAATTGGAAAGGTGGCAACTAAACCTTGTATTACTCTAATGGTTCCCAATGTACATCTTACAAAA
*
220859 GATGAGTATTGTTACTTGAAATTAAACTCATCCTGATATCACATTTGTTATGAGCATTGTTAGCC
66 GATGAGTATTGTTACATGAAATTAAACTCATCCTGATATCACATTTGTTATGAGCATTGTTAGCC
* *
220924 AGTTTATGTCCTCACACCCACAATCAAACATTGGGCAGCCTTAGAGTAGATCCTATGTTACTTGA
131 AGTTTATGTCCCCACACCCACAATCAAACATTGGGCAGCCCTAGAGTAGATCCTATGTTACTTGA
220989 AAGGATCTCCTGGACTTGGCATATTATACAACAATCATGGGCAA
196 AAGGATCTCCTGGACTTGGCATATTATACAACAATCATGGGCAA
*
221033 AAATTGGAAAGGTGGCAACTAAACCTTGTATTACTCTAATGGTTCCCAGTGTACATCTTACAAAA
1 AAATTGGAAAGGTGGCAACTAAACCTTGTATTACTCTAATGGTTCCCAATGTACATCTTACAAAA
* * *
221098 GATGAGTATTGTTACATGAAATTAAACTCGTCCTGATATCACATTTGTTGTGAGTATTGTTAGCC
66 GATGAGTATTGTTACATGAAATTAAACTCATCCTGATATCACATTTGTTATGAGCATTGTTAGCC
221163 AGTTTATGTCCCCACACCCACAATCAAACATTGGGCAGCCCTAGAGTAGATCCTATGTTACTTGA
131 AGTTTATGTCCCCACACCCACAATCAAACATTGGGCAGCCCTAGAGTAGATCCTATGTTACTTGA
221228 AAGGATCTCCTGGACTTGGCATATTATACAACAATCATGGGCA
196 AAGGATCTCCTGGACTTGGCATATTATACAACAATCATGGGCA
221271 TACTCATATT
Statistics
Matches: 231, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
239 231 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Consensus pattern (239 bp):
AAATTGGAAAGGTGGCAACTAAACCTTGTATTACTCTAATGGTTCCCAATGTACATCTTACAAAA
GATGAGTATTGTTACATGAAATTAAACTCATCCTGATATCACATTTGTTATGAGCATTGTTAGCC
AGTTTATGTCCCCACACCCACAATCAAACATTGGGCAGCCCTAGAGTAGATCCTATGTTACTTGA
AAGGATCTCCTGGACTTGGCATATTATACAACAATCATGGGCAA
Found at i:224709 original size:13 final size:15
Alignment explanation
Indices: 224678--224709 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
224668 TAATCTGTCA
224678 ATTTTATCCATTCAT
1 ATTTTATCCATTCAT
224693 ATTTTA-CCATT-AT
1 ATTTTATCCATTCAT
224706 ATTT
1 ATTT
224710 ACTCACATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 5 0.29
15 6 0.35
ACGTcount: A:0.28, C:0.16, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTATCCATTCAT
Found at i:238642 original size:24 final size:23
Alignment explanation
Indices: 238607--238652 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
238597 AATATTCATC
*
238607 TTATCTTAATTTGCTTTGACAAT
1 TTATCTTAATTTGCATTGACAAT
*
238630 TTATTTTATATTTGCATTGACAA
1 TTATCTTA-ATTTGCATTGACAA
238653 ATTAACTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.28, C:0.11, G:0.09, T:0.52
Consensus pattern (23 bp):
TTATCTTAATTTGCATTGACAAT
Found at i:246948 original size:17 final size:16
Alignment explanation
Indices: 246916--246959 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
246906 CATGCATCTT
246916 ATTTTATTGTCATTGC
1 ATTTTATTGTCATTGC
*
246932 ATTTTAGTTGTCGTTGC
1 ATTTTA-TTGTCATTGC
246949 ATTTTACTTGT
1 ATTTTA-TTGT
246960 TAGTTCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 6 0.24
17 19 0.76
ACGTcount: A:0.16, C:0.11, G:0.16, T:0.57
Consensus pattern (16 bp):
ATTTTATTGTCATTGC
Found at i:247574 original size:18 final size:19
Alignment explanation
Indices: 247551--247590 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
247541 TAAAAATAGA
247551 AAAGAAGAA-A-AAGAAAGC
1 AAAGAAGAAGAGAA-AAAGC
247569 AAAGAAGAAGAGAAAAAGC
1 AAAGAAGAAGAGAAAAAGC
247588 AAA
1 AAA
247591 AAAATTATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 9 0.45
19 9 0.45
20 2 0.10
ACGTcount: A:0.72, C:0.05, G:0.23, T:0.00
Consensus pattern (19 bp):
AAAGAAGAAGAGAAAAAGC
Found at i:250374 original size:18 final size:17
Alignment explanation
Indices: 250332--250374 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
250322 AAAAAGTGAT
250332 AAAAAAAGTAGAGAAAA
1 AAAAAAAGTAGAGAAAA
250349 AAGAAAAA-TACGAGAAAA
1 AA-AAAAAGTA-GAGAAAA
250367 AGAAAAAA
1 A-AAAAAA
250375 ATAAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 4 0.17
18 18 0.78
19 1 0.04
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (17 bp):
AAAAAAAGTAGAGAAAA
Found at i:259652 original size:13 final size:12
Alignment explanation
Indices: 259634--259679 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
259624 TTTTTCAAAA
*
259634 AAAGTCAACGGTC
1 AAAGTCAA-AGTC
259647 AAAGTCAAAGTC
1 AAAGTCAAAGTC
*
259659 AATGATCAAAGTC
1 AAAG-TCAAAGTC
259672 AAAGTCAA
1 AAAGTCAA
259680 CTATCAAAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 10 0.34
13 19 0.66
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.17
Consensus pattern (12 bp):
AAAGTCAAAGTC
Found at i:259655 original size:6 final size:6
Alignment explanation
Indices: 259634--259679 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
259624 TTTTTCAAAA
* *
259634 AAAGTC AACGGTC AAAGTC AAAGTC AATGATC AAAGTC AAAGTC AA
1 AAAGTC AA-AGTC AAAGTC AAAGTC AAAG-TC AAAGTC AAAGTC AA
259680 CTATCAAAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
6 24 0.71
7 10 0.29
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
AAAGTC
Found at i:259658 original size:19 final size:19
Alignment explanation
Indices: 259634--259688 Score: 83
Period size: 19 Copynumber: 2.9 Consensus size: 19
259624 TTTTTCAAAA
*
259634 AAAGTCAACGGTCAAAGTC
1 AAAGTCAACGATCAAAGTC
*
259653 AAAGTCAATGATCAAAGTC
1 AAAGTCAACGATCAAAGTC
*
259672 AAAGTCAACTATCAAAG
1 AAAGTCAACGATCAAAG
259689 CCAATAGGTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.47, C:0.18, G:0.16, T:0.18
Consensus pattern (19 bp):
AAAGTCAACGATCAAAGTC
Found at i:278389 original size:49 final size:49
Alignment explanation
Indices: 278317--278414 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
278307 GCTTATGATT
*
278317 ACCTCTTCAGATTTCGTATCAAGAACACCAGACTTGAAGAAAAGGCATA
1 ACCTCTTCAGATTTCGTATCAAGAACACCAGACTTCAAGAAAAGGCATA
278366 ACCTCTTCAGATTTCGTATCAAGAACACCAGACTTCAAGAAAAGGCATA
1 ACCTCTTCAGATTTCGTATCAAGAACACCAGACTTCAAGAAAAGGCATA
278415 GTGACAAATC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.22
Consensus pattern (49 bp):
ACCTCTTCAGATTTCGTATCAAGAACACCAGACTTCAAGAAAAGGCATA
Found at i:278890 original size:79 final size:79
Alignment explanation
Indices: 278746--279393 Score: 800
Period size: 79 Copynumber: 8.2 Consensus size: 79
278736 AAGTCACCAC
* * * *
278746 ATCCAATCTTTTACCTTAACTAGAAGGTAGATTGAAAACCATCAGATCTCTTACCCCGACCATGG
1 ATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCGATCTCTTACCCCGACCATGG
278811 GGCA-ACTTGAAGCA
66 GGCAGA-TTGAAGCA
* * * * * *
278825 ATCCAATCTTTTACCCTAACTAGAGGGCAGATTGAAGACCATTCGATCTATTATCCGGACTATGG
1 ATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCGATCTCTTACCCCGACCATGG
*
278890 GGCTGATTGAAGC-
66 GGCAGATTGAAGCA
278903 ATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCG-TCTCTTACCCCGACCATGG
1 ATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCGATCTCTTACCCCGACCATGG
*
278967 GGCAGATTGAAGACC
66 GGCAGATTGAAG-CA
* * * * *
278982 ATCCAATCTTTTATCCTAACCAGAGGGTAGATTGAAGACCATCCAATCTCTTACCTCAACCATGA
1 ATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCGATCTCTTACCCCGACCATG-
* *
279047 GGGCAGATTAAAGACC
65 GGGCAGATTGAAG-CA
* * ***
279063 ATCTAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCGATCTCTTACCCCAACCACAA
1 ATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCGATCTCTTACCCCGACCATGG
* *
279128 AGCAAATTGAAGCA
66 GGCAGATTGAAGCA
* * * * **
279142 ATTCAATATTTTACCCTAACCAGAGTGTAGATTGAAGACCATCCGATCTCTTACCCTAACCATGG
1 ATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCGATCTCTTACCCCGACCATGG
279207 GGCAGATTGAAGC-
66 GGCAGATTGAAGCA
* * * *
279220 ATCCAATCTTTTACCCTAACCAGAGGGTAGATTGAAAATCATCCGATCTCTTACCCTGACCATGG
1 ATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCGATCTCTTACCCCGACCATGG
*
279285 GGTAGATTGAAGCA
66 GGCAGATTGAAGCA
* * * * * * **
279299 ATCCAATCTTTTACCCTAACTAGAAGGCAAATTGAAAACTATCTGATCTCTTACTTCGACCATGG
1 ATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCGATCTCTTACCCCGACCATGG
**
279364 GATAGATTGAAGCA
66 GGCAGATTGAAGCA
*
279378 ATCCAATTTTTTACCC
1 ATCCAATCTTTTACCC
279394 CTAAAGCTAT
Statistics
Matches: 497, Mismatches: 66, Indels: 12
0.86 0.11 0.02
Matches are distributed among these distances:
77 26 0.05
78 115 0.23
79 258 0.52
80 26 0.05
81 72 0.14
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (79 bp):
ATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCGATCTCTTACCCCGACCATGG
GGCAGATTGAAGCA
Found at i:279273 original size:157 final size:157
Alignment explanation
Indices: 278745--279393 Score: 809
Period size: 157 Copynumber: 4.1 Consensus size: 157
278735 AAAGTCACCA
* * *
278745 CATCCAATCTTTTACCTTAACTAGAAGGTAGATTGAAAACCATCAGATCTCTTACCCCGACCATG
1 CATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAAACCATCCGATCTCTTACCCCGACCATG
* * * *
278810 GGGCAACTTGAAGCAATCCAATCTTTTACCCTAACTAGAGGGCAGATTGAAGACCATTCGATCTA
66 GGGCAAATTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATCTC
** * *
278875 TTATCC-GGACTATGGGGCTGATTGAAG
131 TTA-CCTCAACCATGGGGCAGATTGAAG
*
278902 CATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCG-TCTCTTACCCCGACCATG
1 CATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAAACCATCCGATCTCTTACCCCGACCATG
* * * * *
278966 GGGCAGATTGAAGACCATCCAATCTTTTATCCTAACCAGAGGGTAGATTGAAGACCATCCAATCT
66 GGGCAAATTGAAG-CAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATCT
*
279031 CTTACCTCAACCATGAGGGCAGATTAAAG
130 CTTACCTCAACCATG-GGGCAGATTGAAG
* * *
279060 ACCATCTAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCGATCTCTTACCCCAACCA
1 --CATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAAACCATCCGATCTCTTACCCCGACCA
**** * * * *
279125 CAAAGCAAATTGAAGCAATTCAATATTTTACCCTAACCAGAGTGTAGATTGAAGACCATCCGATC
64 TGGGGCAAATTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATC
279190 TCTTACC-CTAACCATGGGGCAGATTGAAG
129 TCTTACCTC-AACCATGGGGCAGATTGAAG
* * *
279219 CATCCAATCTTTTACCCTAACCAGAGGGTAGATTGAAAATCATCCGATCTCTTACCCTGACCATG
1 CATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAAACCATCCGATCTCTTACCCCGACCATG
* * * * * * * *
279284 GGGTAGATTGAAGCAATCCAATCTTTTACCCTAACTAGAAGGCAAATTGAAAACTATCTGATCTC
66 GGGCAAATTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATCTC
* * **
279349 TTACTTCGACCATGGGATAGATTGAAG
131 TTACCTCAACCATGGGGCAGATTGAAG
*
279376 CAATCCAATTTTTTACCC
1 C-ATCCAATCTTTTACCC
279394 CTAAAGCTAT
Statistics
Matches: 424, Mismatches: 59, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
156 31 0.07
157 225 0.53
158 27 0.06
159 13 0.03
160 103 0.24
161 25 0.06
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (157 bp):
CATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAAACCATCCGATCTCTTACCCCGACCATG
GGGCAAATTGAAGCAATCCAATCTTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATCTC
TTACCTCAACCATGGGGCAGATTGAAG
Found at i:279350 original size:317 final size:317
Alignment explanation
Indices: 278745--279393 Score: 863
Period size: 317 Copynumber: 2.1 Consensus size: 317
278735 AAAGTCACCA
* * **
278745 CATCCAATCTTTTACCTTAACTAGAAGGTAGATTGAAAACCATCAGATCTCTTACCCCGACCATG
1 CATCCAATCTTTTACCCTAACTAGAAGGTAGATTGAAAACCATCAGATCTCTTACCCCAACCACA
** * * * *
278810 GGGCAACTTGAAGCAATCCAATCTTTTACCCTAACTAGAGGGCAGATTGAAGACCATTCGATCTA
66 AAGCAAATTGAAGCAATCCAATATTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATCTA
* * * * * *
278875 TTATCCGGACTATGGGGCTGATTGAAGCATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAG
131 TTACCCGAACCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAACCAGAGGGTAGATTGAAA
* *
278940 ACCATCCGTCTCTTACCCCGACCATGGGGCAGATTGAAGACCATCCAATCTTTTATCCTAACCAG
196 ACCATCCGTCTCTTACCCCGACCATGGGGCAGATTGAAGACAATCCAATCTTTTACCCTAACCAG
* * * *
279005 AGGGTAGATTGAAGACCATCCAATCTCTTACCTCAACCATGAGGGCAGATTAAAGAC
261 AAGGCAAATTGAAAACCATCCAATCTCTTACCTCAACCATGAGGGCAGATTAAAGAC
* * * *
279062 CATCTAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCCGATCTCTTACCCCAACCACA
1 CATCCAATCTTTTACCCTAACTAGAAGGTAGATTGAAAACCATCAGATCTCTTACCCCAACCACA
* * * *
279127 AAGCAAATTGAAGCAATTCAATATTTTACCCTAACCAGAGTGTAGATTGAAGACCATCCGATCTC
66 AAGCAAATTGAAGCAATCCAATATTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATCTA
*
279192 TTACCCTAACCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAACCAGAGGGTAGATTGAAA
131 TTACCCGAACCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAACCAGAGGGTAGATTGAAA
* * * *
279257 ATCATCCGATCTCTTACCCTGACCATGGGGTAGATTGAAG-CAATCCAATCTTTTACCCTAACTA
196 ACCATCCG-TCTCTTACCCCGACCATGGGGCAGATTGAAGACAATCCAATCTTTTACCCTAACCA
* ** * * ** *
279321 GAAGGCAAATTGAAAACTATCTGATCTCTTACTTCGACCATG-GGATAGATTGAAG-C
260 GAAGGCAAATTGAAAACCATCCAATCTCTTACCTCAACCATGAGGGCAGATTAAAGAC
* *
279377 AATCCAATTTTTTACCC
1 CATCCAATCTTTTACCC
279394 CTAAAGCTAT
Statistics
Matches: 285, Mismatches: 46, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
315 15 0.05
316 10 0.04
317 231 0.81
318 29 0.10
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (317 bp):
CATCCAATCTTTTACCCTAACTAGAAGGTAGATTGAAAACCATCAGATCTCTTACCCCAACCACA
AAGCAAATTGAAGCAATCCAATATTTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATCTA
TTACCCGAACCATGGGGCAGATTGAAGCATCCAATCTTTTACCCTAACCAGAGGGTAGATTGAAA
ACCATCCGTCTCTTACCCCGACCATGGGGCAGATTGAAGACAATCCAATCTTTTACCCTAACCAG
AAGGCAAATTGAAAACCATCCAATCTCTTACCTCAACCATGAGGGCAGATTAAAGAC
Found at i:279976 original size:4 final size:4
Alignment explanation
Indices: 279957--280016 Score: 56
Period size: 4 Copynumber: 15.5 Consensus size: 4
279947 GGCCCAATTC
* *
279957 TATT T-TT TACTT TATT TATT TATT TCTT T-TAT T-TT TATT TATT TATC
1 TATT TATT TA-TT TATT TATT TATT TATT TAT-T TATT TATT TATT TATT
280004 TATT TA-T TATT TA
1 TATT TATT TATT TA
280017 AATAAATACA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
3 9 0.19
4 35 0.73
5 4 0.08
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:280016 original size:23 final size:24
Alignment explanation
Indices: 279953--280016 Score: 80
Period size: 23 Copynumber: 2.7 Consensus size: 24
279943 CAAAGGCCCA
*
279953 ATTCTATTTTTTACTTTATTTATTT
1 ATTCTATTTATTA-TTTATTTATTT
279978 ATTTCT-TTTATT-TTTATTTATTT
1 A-TTCTATTTATTATTTATTTATTT
280001 A-TCTATTTATTATTTA
1 ATTCTATTTATTATTTA
280017 AATAAATACA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
21 3 0.09
22 6 0.17
23 16 0.46
25 6 0.17
26 4 0.11
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (24 bp):
ATTCTATTTATTATTTATTTATTT
Found at i:282854 original size:5 final size:5
Alignment explanation
Indices: 282846--282879 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
282836 ATATAGTGGT
*
282846 ATATC ATATT ATATC ATATC ATATC ATATC ATAT
1 ATATC ATATC ATATC ATATC ATATC ATATC ATAT
282880 ATTAATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (5 bp):
ATATC
Found at i:298812 original size:15 final size:15
Alignment explanation
Indices: 298792--298837 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
298782 ATCATAAATG
298792 TTTTTCTTCTTTTTC
1 TTTTTCTTCTTTTTC
298807 TTTTTCTTCCTTTTTC
1 TTTTTCTT-CTTTTTC
*
298823 TCATTT-TTCTTTTTC
1 T-TTTTCTTCTTTTTC
298838 AAGTGATTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 15 0.54
16 10 0.36
17 3 0.11
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTCTTCTTTTTC
Found at i:299443 original size:19 final size:19
Alignment explanation
Indices: 299427--299464 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
299417 AGAAATGCGC
299427 TAACAAAATAAAAATGCAA
1 TAACAAAATAAAAATGCAA
*
299446 TGACAAAATAAAAATGCAA
1 TAACAAAATAAAAATGCAA
299465 GAAAGCTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.66, C:0.11, G:0.08, T:0.16
Consensus pattern (19 bp):
TAACAAAATAAAAATGCAA
Found at i:299952 original size:27 final size:27
Alignment explanation
Indices: 299899--299953 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
299889 GTCCTTCATG
* *
299899 TCATTCTTTTCTTCTTTCTCTTATTCT
1 TCATTCTTTTCTTCTTGCTCATATTCT
*
299926 TCATTCTTCTTCTTCTTGC-CATCTTCT
1 TCATTCTT-TTCTTCTTGCTCATATTCT
299953 T
1 T
299954 ATTTGACACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.07, C:0.29, G:0.02, T:0.62
Consensus pattern (27 bp):
TCATTCTTTTCTTCTTGCTCATATTCT
Found at i:316568 original size:2 final size:2
Alignment explanation
Indices: 316556--316593 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
316546 TAACATTTAT
*
316556 TA TA T- TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
316594 TCTTTTCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:317686 original size:15 final size:15
Alignment explanation
Indices: 317666--317703 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
317656 GTGACAAAAA
*
317666 CTTCCTCTTTTTCTT
1 CTTCCTCCTTTTCTT
317681 CTTCCTCCTTTTCTT
1 CTTCCTCCTTTTCTT
317696 C-TCCTCCT
1 CTTCCTCCT
317704 CGATACCCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (15 bp):
CTTCCTCCTTTTCTT
Found at i:327251 original size:67 final size:67
Alignment explanation
Indices: 327093--327236 Score: 263
Period size: 67 Copynumber: 2.2 Consensus size: 67
327083 GTCAATGCAA
* *
327093 ATTTTGT-AAAACTGTAATACAAAATGTCAGAGCAATTCAATAGAAAATGAAATGAATGTTGAAG
1 ATTTTGTCAATACTGTAATACAAAATGTCAGAGCAATTCAATAGAAAAAGAAATGAATGTTGAAG
327157 AT
66 AT
327159 ATTTTGTCAATACTGTAATACAAAATGTCAGAGCAATTCAATAGAAAAAGAAATGAATGTTGAAG
1 ATTTTGTCAATACTGTAATACAAAATGTCAGAGCAATTCAATAGAAAAAGAAATGAATGTTGAAG
327224 AT
66 AT
327226 ATTTTGTCAAT
1 ATTTTGTCAAT
327237 GCGAATTTAG
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
66 7 0.09
67 68 0.91
ACGTcount: A:0.45, C:0.08, G:0.16, T:0.31
Consensus pattern (67 bp):
ATTTTGTCAATACTGTAATACAAAATGTCAGAGCAATTCAATAGAAAAAGAAATGAATGTTGAAG
AT
Found at i:331615 original size:21 final size:23
Alignment explanation
Indices: 331589--331639 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
331579 TATCTTCTAT
*
331589 CGATACAAGTATGC-A-AACTAC
1 CGATACAACTATGCAATAACTAC
*
331610 CGATACATCTATGCATATAACTAC
1 CGATACAACTATGCA-ATAACTAC
331634 CGATAC
1 CGATAC
331640 TCACAATTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 12 0.48
23 1 0.04
24 12 0.48
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (23 bp):
CGATACAACTATGCAATAACTAC
Found at i:331654 original size:21 final size:21
Alignment explanation
Indices: 331628--331681 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
331618 CTATGCATAT
331628 AACTACCGATACTCACAATTC
1 AACTACCGATACTCACAATTC
331649 AACTACCGATACTCACAATTC
1 AACTACCGATACTCACAATTC
331670 AACTACCGATAC
1 AACTACCGATAC
331682 ATCTCAAGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.39, C:0.33, G:0.06, T:0.22
Consensus pattern (21 bp):
AACTACCGATACTCACAATTC
Found at i:332114 original size:52 final size:52
Alignment explanation
Indices: 332043--332236 Score: 325
Period size: 52 Copynumber: 3.7 Consensus size: 52
332033 TTGTTTCGTA
* *
332043 AAGGAATTCATATACTCACGATGACACTTAGTCATCGAACCTTATAATCCGTG
1 AAGG-ATTCATGTACTCACGATAACACTTAGTCATCGAACCTTATAATCCGTG
* * *
332096 AAGGATTCATGTACTCACGATGACACTTAGTCATTGGACCTTATAATCCGTG
1 AAGGATTCATGTACTCACGATAACACTTAGTCATCGAACCTTATAATCCGTG
*
332148 AAGGATTCATGTACTCACGATAACACTTAGTCATCGGACCTTATAATCCGTG
1 AAGGATTCATGTACTCACGATAACACTTAGTCATCGAACCTTATAATCCGTG
332200 AAGGATTCATGTACTCACGATAACACTTAGTCATCGA
1 AAGGATTCATGTACTCACGATAACACTTAGTCATCGA
332237 CCCCTTTTTC
Statistics
Matches: 135, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
52 131 0.97
53 4 0.03
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (52 bp):
AAGGATTCATGTACTCACGATAACACTTAGTCATCGAACCTTATAATCCGTG
Found at i:336497 original size:20 final size:19
Alignment explanation
Indices: 336474--336511 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
336464 TCAAAAAGTT
336474 GAGAAAAAAAATAAAAATAC
1 GAGAAAAAAAA-AAAAATAC
*
336494 GAGAAAAATAAAAAAATA
1 GAGAAAAAAAAAAAAATA
336512 AAAAATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.76, C:0.03, G:0.11, T:0.11
Consensus pattern (19 bp):
GAGAAAAAAAAAAAAATAC
Found at i:338541 original size:216 final size:216
Alignment explanation
Indices: 337132--343709 Score: 5712
Period size: 216 Copynumber: 31.3 Consensus size: 216
337122 TTAAAAGTTC
** * **
337132 ATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACATGTCAAACTTTTAAA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * * * *
337195 AGTTCTTTTATAACTTCGGTTCGTTAAAGAATTCAAGATGATCCATTCCTTCGAGCAATTTTTCG
66 AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCG
* * * * * *
337260 AACATTCCATGCTGGGGAAA-CTGCAT-AGTTTTGTCTAAATTGTTTGTCATTTTACT-ATCAAC
131 AACATTCCATGCTCGGGAAATC-GCATCA-TTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAG
* *
337322 TTTCGATC-TTGAATTAAAAACTT
193 TTTTGGTCTTTGAATTAAAAACTT
* * ** ** *
337345 ATTTATGTGAGAATTGTTTCTCTATTGGTTCTAAGATTAACTTTCGAACTTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * * * * * * *
337410 AGTTCTTTTATAAATTCGGTTTCTTAAAATATTGAAGATGAAT-AATTCCTTCGAGTAATTTTCC
66 AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACG-ATCCATTCCTTCGAGCAATTTTCC
* *
337474 GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC-AGAT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG-T
*
337538 CTTT-TTCTTTGAATT-AAAACTT
194 -TTTGGTCTTTGAATTAAAAACTT
* * * **
337560 ATTTAGGTGAGAATTATTTCTCTCTTGGTTCTGGGACGAACTTCCGAACTTGTC--A-----A--
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * * *
337616 A----CTTT-T-ACTTTGGTACCTTAACA-TATTCAAGACAATCAACTGCTTCGAGCAATTTTCC
66 AGTTCCTTTATAACTTTGGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * * * *
337674 GAACATTTCATTCTCGTGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTAAAAAAG-T
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
*
337738 TTGTGTCTTTGAATTAAAAAATT
195 TTG-GTCTTTGAATTAAAAACTT
* ** * *
337761 ATTTACATGAGAATTGTTTGACTCTTGGTTCTTAGACGAACTTTCGAACTTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * *
337826 AGTTCTTTTATAACTTTGGTTCCTTAAAGAATTCAAGAC-ATTCCATTCCTTCGAGCAATTTTCT
66 AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTCC
* * * * * *
337890 GAACATTCCATGCTCAGGAAATCACAT-ACTTTTGTCTAAATAGTTTGTCATTTTGTTATCAACT
130 GAACATTCCATGCTCGGGAAATCGCATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
** *
337954 TTTTATC-TTGAATTAAAAAGTT
194 TTTGGTCTTTGAATTAAAAACTT
* * * ** * *
337976 ATTTATGTGAGAATTGTTTCTCTATTGCTTC-TGAGATAAACTTCCA-AAATTGTCAAACTTTTA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-GACGAACTT-TAGAACTTGTCAAACTTTTA
* * * * *
338039 CGAGTTCTTTTATAACTTCT-GTTCCTTAAAATATTGAAGACAATCCATTCCTTCAAGCAATTTT
64 CGAGTTCCTTTATAACTT-TGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTT
** ** * * *
338103 TTGGAACATTCCATGCTCTAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTTATCAA
127 TCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* *
338168 CTTTTGCTCTTTGAA-T---AACTT
192 GTTTTGGTCTTTGAATTAAAAACTT
* * *
338189 ATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTTGAACTTGTCAAACTTTTATG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * *
338254 AGTTCCCTTATAACTTTGGTTCCTTAATGTATTCAAGATGATCCATT-CTTGCGAGCAATTTTTC
66 AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-CGAGCAATTTTCC
* ** * *
338318 GAACATTCCATGCACAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAAGAAGTT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
*
338383 TTGGTCTTTGAATTAAAAACGT
195 TTGGTCTTTGAATTAAAAACTT
* * ** *
338405 ATTTACGTGAGAATTGTTTCTCT-TGGGTTCTTGGATGAACTGAAGAACTTGTCAAACTTTTACA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * *
338469 AGATCCTTTATTACTTAGGTTCCTTAAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTCC
66 AGTTCCTTTATAACTTTGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* **** * * * * * *
338534 GAACATTCCATGTTAAAAAAATTGAATCATTTTGTGTAAATATTTTGTCATTCCTGTAAACAAGT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT-TTGTAAACAAGT
* *
338599 TTTGGTTTTTGAATTAAAAACTC
194 TTTGGTCTTTGAATTAAAAACTT
* * * ** *
338622 ATTTACATGAGAATTGTTTCTCTCTTGGTTCTGGGATGAACTTCCGAATTTGTC--A-----A--
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * *
338678 A----CTTT-T-ACTTTGGTACCTTAAAGTATTCAAGACTATCAATTCCTTCGAGCAAATTTCCG
66 AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCG
* ** * * * *
338737 AACATTCCATTCTCGTAAAATCACTTCATTTGGTCTAAATAATTTGTCATTTTGTAAAAAAG-TT
131 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
338801 TGTGTCTTTGAATTAAAAACTT
196 TG-GTCTTTGAATTAAAAACTT
* * * *
338823 AGTTACGTGAGAATTGTTTCTCTATTAGTT-TTGAGACAAACTTCT-GAACTTGTCAAACTTTTA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-GACGAACTT-TAGAACTTGTCAAACTTTTA
* * * * *
338886 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGAATTCAGGATGATCCATTCCTTCGAGCAATTTTC
64 CGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* * * *
338951 CAAACATTCCATGCTTGGGAAATCGCAT-AGTTTTGTCTAAATAGTTTGTCATTTTGTTATA-AA
129 CGAACATTCCATGCTCGGGAAATCGCATCA-TTTGGTCTAAATAGTTTGTCATTTTG-TAAACAA
* *
339014 CTTTTGATC-TTGAATTAAAAACTT
192 GTTTTGGTCTTTGAATTAAAAACTT
* ** *
339038 ATTTACTTGAGAATTGTTTCTCTCTTGGTTAATGG-CTGAACTTTCGAACTTGTCAAACTTTTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAACTTTAGAACTTGTCAAACTTTTAC
* * * * * *
339102 GAGTTCTTTTTATAACTTTGATTCCTTAAAG-ACTTTAGGACGGTCCATTACTTCGAGCAATTTT
65 GAGTTC-CTTTATAACTTTGGTTCCTTAAAGTA-TTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * * *
339166 TCGAACATTTCATGCTTGGAAAATCGCAT-AGTTTAGTCTAAGTAGTTTGTCATTTTGTTATCAA
128 CCGAACATTCCATGCTCGGGAAATCGCATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
*
339230 CTTTTGGTCTTTGAATTAAAAACTT
192 GTTTTGGTCTTTGAATTAAAAACTT
* * * * * ** * *
339255 ATTTACGTGAAAATTCTTTCTCTCTTGGTTCATGGAGGAACATCCGAACTTGTAAAATTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * * *
339320 AGTT-TTTATATAACTTAGGTTCCATAAAGTATTCAAGATGATCCATTCCTTCAAGCAA--TT--
66 AGTTCCTT-TATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * * * *
339380 -----TT-C-T--T-GGGAAATCACATCATTTTGTTTAAATAGTTTGTCATATTCTAAACAAGTT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
**
339435 TTGGTCTTTGAATTAAAAAAGT
195 TTGGTCTTTGAATTAAAAACTT
* * * ** *
339457 ATTTATGTGAGAATTG-TT-TCTCTTAGTTCTTGGATGAACTAAAGAACTTGTCAAACTTTTACA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * * * * *
339520 AGATCCTTTATTACTTCGGGT-CTTAAAAAGTATTCAAGACGATCCATTCCTTTGAACAATTTTT
66 AGTTCCTTTATAACTTTGGTTCCTT--AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
*** * ** * * * *
339584 CGAACATTCCATGCTCGGGAAATTTAATTATTTTATCTAAATATTTTGTCATTCTGTAAGCATGT
129 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
339649 TTTTGTCTTTGAATTAAAAA-TT
194 TTTGGTCTTTGAATTAAAAACTT
* * * *
339671 CATTGACGTGAGAATTGTTTCTCTCTTGGTT-TTAGGATGAAGTTTTGAACTTGTC--A-----A
1 -ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTTAGAACTTGTCAAACTTTTA
* * * * * *
339728 --A----CTTT-T-ACTTTGGTACCTTAAACTCTTCAAGACGATCAATTCTTTCGAGCAATTTTT
64 CGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* * ** *
339785 CGAACATTCCATCCTCGTGAAATCGCATCATTTTCTCTAAATAGTTTGTCATTTTGTAAACAAAT
129 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
339850 TTTTGTCTTTGAATTAAAAACTT
194 TTTGGTCTTTGAATTAAAAACTT
* * * *
339873 ATTTACTTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACTTCTA-AACTTATTAAACTTTTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-TAGAACTTGTCAAACTTTTAC
** * * * *
339937 GAGTT-CTGTTATAACTTCAGTTCCTTAATGTATTCAAGACAATCTATTCCTTCGAGCAATTTTT
65 GAGTTCCT-TTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* ** * * *
340001 CG-ACAATTCCATGCACAAGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTCTAAATAAG
129 CGAAC-ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
340065 TTTTGGTCTTTGAATTAAAAA-TGT
193 TTTTGGTCTTTGAATTAAAAACT-T
* * * ** *
340089 ATTTACGTGATAATTATTTCTCT-TGGGTTCTTGGACGAACTAAAGAGCTTGTCAAACTTTTAC-
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * *
340152 ATGATCCTTTATTACTTTGGTTCCTTAAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTC
66 A-GTTCCTTTATAACTTTGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
** * * * * * *
340217 TAAACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATATTTTGTCATTCTGTAAACATGT
129 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* **
340282 TTTGGGCTTTGAATTAAAAACGC
194 TTTGGTCTTTGAATTAAAAACTT
* * **
340305 ATTTATGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACTTCCGAACTTGTC-AA-----AC-
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * **
340363 ---T-C--T-T-ACTTTGGTACCTTAAAGTATTCAAGACTATCAATTCCTTCGAGCAATTTTTTG
66 AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCG
* * * * **
340420 AACTTTCTATTCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGAT
131 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
*
340484 TGTGTCCTTGAATTAAAAACTT
196 TG-GTCTTTGAATTAAAAACTT
* * * * *
340506 ATTTACATTAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACCTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * *
340571 AGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAG-TATTTTCCG
66 AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCG
* * * *
340635 AACATTCCATGCTCGGGTAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAGGTTT
131 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
*
340700 TGGTCTTTAAATTAAAAACTT
196 TGGTCTTTGAATTAAAAACTT
* * * * *
340721 -TTTATGTGAGAATTATTTCTCTATTGGTTCTGGGACGAACTTCT-GAACTTGTCAAACTTTTAA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-TAGAACTTGTCAAACTTTTAC
* ** * *
340784 TAGTTATTTTATAACTTTGGTTCCTCAAAGTATTCAAGACGATACATTCCTTCGAGCAA---T--
65 GAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * * *
340844 -----TT---T-CTCGAGAAATCGCTTCATTTGGTCTAAATAGTTTATCATTTTCTAAACAAGTT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
*
340900 TTGGTCTTTGAATTAAAAACGT
195 TTGGTCTTTGAATTAAAAACTT
** * * * * * *
340922 ATTTACGTGAGAATTGTTTCTCT-AGGGTTCTTGGATGAAATTAAGAACTAGTCAAACTTTCATG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * ** **
340986 AGATCCTTTATTACTTTGGTTCTTTAAAAGTATTCAAGGTGATCCATTCCTTC-AAAAATTTTTC
66 AGTTCCTTTATAACTTTGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTC
** * * * * * *
341050 TAAACATTCCATGCTTGGGAAATTGAATCATTTTGTCTAAATA-TTCTGTCATTTTGTAAAGATG
129 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAAG
* * *
341114 TTGTAGTCTTTGAATTAAAAACTC
193 TTTTGGTCTTTGAATTAAAAACTT
* * * *** *
341138 ATTTACATGAGAATTGTTTCTCTCTTGGTTCTGGGACAAACTTCCTAACTTGTTAAACTTTT---
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * *
341200 A----C-TT-T-A---T--TACCTTAAAGTATTCAAGACGATCCACTCCTTCGAGAAATTTTTCG
66 AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCG
* ** *
341253 AACATTCCACGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAG-TT
131 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
341317 TGTGTCTTTGAATTAAAAACTT
196 TG-GTCTTTGAATTAAAAACTT
* * *
341339 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * * *
341404 AGTTTCATTT-TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCAAGTAATTTTCC
66 AG-TTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * *** * * * **
341468 AAACATTCCATGCACAATAAATCACATCATTTGGTCTATATAGTTTGTCATTTTGTAAAAAAAAA
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGT
341533 TTT-GTCTTTGAATTAAAAACTT
194 TTTGGTCTTTGAATTAAAAACTT
* * **
341555 ATTTACGTGAGAATTGTTTCTCTATTGGTTC-TGAGATGAACTTCCGAACTTGTCAAACTTTTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-GACGAACTTTAGAACTTGTCAAACTTTTAC
* * * * * *
341619 GAGTT-CTATTATAACTTCGATTGCTTAAAATATTGAAGACGATCCATTCCTTCTAGCAATTTTC
65 GAGTTCCT-TTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC
* * ** * * * *
341683 TGAGCATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAGTAGTTTTTCATTTTGTTATA-AAC
129 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAG
* *
341747 TTTT-GTCTTAGAATTGAAAACTT
193 TTTTGGTCTTTGAATTAAAAACTT
* * * * *
341770 A-TT---T--G-A---TTTATCTCTTGGTTTTTGAATGAACTTTTGAACTTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * * * * * * * * *
341825 GGTTTCGTTATAACTTCGATTCATTAATGTATTCAAGACGACCCATTTCTTCGAGCAATTTTTCT
66 AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCG
* * ** * * *
341890 AACTTTCCATGCACAAGAAATCACATC-TTTGGTCTAAATAGCTTGTCATTTTGTAAACAAATTT
131 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* *
341954 TTGTATTTGAATTAAAAACTT
196 TGGTCTTTGAATTAAAAACTT
* * * * * * *
341975 ATTTATGTGATAATTGTTTCTCTATTGGTTC-TGAGACAAACTTTCGAACTTGTTAAACCTTTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-GACGAACTTTAGAACTTGTCAAACTTTTAC
* * * * **
342039 AAGTTCTTTTATAACTTTGGTTCCTTAAAGAATTCAAGATGATCCATTCCTTCGAGCAATTTTTT
65 GAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * ** * * * * * * *
342104 GAACAATCCATGTTCGGGAAATCGCATTGTTTTGTCTACATACTTTTTCATTTTGTTATCAACTT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* *
342169 TTGAT-ATTGAATTAAAAACTT
195 TTGGTCTTTGAATTAAAAACTT
* *
342190 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTTGAACTTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * * * * * * *
342255 ACTTCTTTTATAACTTCGATTCCTTAAAGAATTCAAGACTATCCATTCCTTTGAGCAATTTTTCA
66 AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCG
* * * * * *
342320 AACATTCCATGCTCGGAAAATCGCAT-AGTTTAGTCTAAAAAGTTTGTCATTTTGTTATCAACTT
131 AACATTCCATGCTCGGGAAATCGCATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
342384 TTGGTCTTT-AATTTAAAAACTT
195 TTGGTCTTTGAA-TTAAAAACTT
* * ** * * *
342406 ATTTACATGAGAATTATTTCTCTCAAGGTTCATGGACGAAC-ATCGAACTTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * *
342470 AGTTCTTTTATAACTTTGGTTCCATAAATTATTCAAGACGATCCATTCCTTCAAGCAA--TT---
66 AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCG
* * * * *
342530 ----TT-C-T-C-C-GGAAATTGCATCATTTTGT-TAGATAGTTTGTCATATTCTAAACAAGTTT
131 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* *
342585 TGGTCTTTGAACTAGAAA-TGT
196 TGGTCTTTGAATTAAAAACT-T
* *
342606 ATTTACGTGAGAATTG-TT-TCTATTGGTTCTTGGACGAA-TTGAAGAACTTGTCAAACTTTTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-TAGAACTTGTCAAACTTTTAC
* * * * * *
342668 -ATGATCCTTTATTACTTCGGTT-CTATAAAAGTATTCAAGATGATCCATTCCTTTGAACAAATT
65 GA-GTTCCTTTATAACTTTGGTTCCT-T-AAAGTATTCAAGACGATCCATTCCTTCGAGC-AATT
* * * * * * * *
342731 TT-CAAACATTTCATGCTCGGGAAATTGAATCATTTTGTCTAAAAATTTTGTCATTCTGTAAACA
126 TTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* *
342795 TGTTTTGGTCTTTGAATTAAAAACTA
191 AGTTTTGGTCTTTGAATTAAAAACTT
* * * * *
342821 ATTTA--T--G---TGATTCTCTCCTGGTTCTGGGACAAACTTTCGAACTTGTC--A-----A--
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * * * *
342870 A----CTTT-T-ACTTTGGTACCTTAAAGTAGTCAAGACGATCAATTCCTTCGAGGAATTTTCTG
66 AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCG
* * * * * * *
342929 AACATTCCATTCTCGTGAAATCACATCATTTGGTCTAAATAGTTCGCCATTTTATAAAAAAG-TT
131 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
342993 TGTGTCTTTGAATTAAAAACTT
196 TG-GTCTTTGAATTAAAAACTT
*
343015 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-TAGAACTTGTCAAACTTTTAC
** * * * * *
343079 GAGTTCCTTTATAACTTAAGTTCCTTAAAGTATTTAATATGATACATTCCTTCGAGCAATTTTTC
65 GAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCC
* * * * * *
343144 AAACATTCAATGCTCGGGTAATTGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAGGTT
130 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* *
343209 TTGGTCTTTAAATTAAACACTT
195 TTGGTCTTTGAATTAAAAACTT
* * * * *
343231 -TTTACGTGAGAATTGTTTCTCTAC-TGGTTCTGGGACGAAGTTCCA-AACTTATAAAACTTTTA
1 ATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTT-TAGAACTTGTCAAACTTTTA
* * * * * * *
343293 CCAGTTCTTTTACAACTTCT-GTTCGTTAAAGTATTCAAGATGATGCATTCCTTCAAGCAA---T
64 CGAGTTCCTTTATAACTT-TGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* *
343354 -------TT---T-CTCGGGAAATCGCTTCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAAG
128 CCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
343408 TTTTGGTCTTTAAATTAAAAA-TGA
193 TTTTGGTCTTTGAATTAAAAACT-T
* * *
343432 ATTTACGTGAGAATTGTTTCTCT-TGGGTTCTTGGACGAACTTAAGAACTTGTCAAACTTTCACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
* * *
343496 AGAT-CTTTATTACTTTGGTTCCTTAAAAGTATTCAAGACGATCCATTCCTTCGA--AAATTTCT
66 AGTTCCTTTATAACTTTGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTC-
* * * * * * *
343558 TGAACACTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAAGATGT
129 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
** *
343623 TTTACTCTTTGAATTAAAAACTC
194 TTTGGTCTTTGAATTAAAAACTT
* * *
343646 ATTTATGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACTTTCGAACTTGTCAAACTTTTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTAC
343710 TTTGGTTTTT
Statistics
Matches: 5172, Mismatches: 896, Indels: 592
0.78 0.13 0.09
Matches are distributed among these distances:
193 10 0.00
194 95 0.02
195 8 0.00
196 4 0.00
197 4 0.00
198 22 0.00
199 46 0.01
200 255 0.05
201 893 0.17
202 257 0.05
203 31 0.01
204 38 0.01
205 139 0.03
206 10 0.00
207 6 0.00
208 11 0.00
209 9 0.00
210 38 0.01
211 11 0.00
212 85 0.02
213 123 0.02
214 237 0.05
215 1222 0.24
216 1357 0.26
217 234 0.05
218 27 0.01
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (216 bp):
ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTAGAACTTGTCAAACTTTTACG
AGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCG
AACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
TGGTCTTTGAATTAAAAACTT
Found at i:339625 original size:633 final size:635
Alignment explanation
Indices: 337132--344175 Score: 5494
Period size: 633 Copynumber: 11.2 Consensus size: 635
337122 TTAAAAGTTC
* * *
337132 ATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGAC-GAACTTCCGAACATGTCAAACTTTTAA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CTGAACTTTCGAACTTGTCAAACTTTTAC
* * * *
337194 AAGTTCTTTTATAACTTCGGTTCGTTAAAGAATTCAAGATGATCCATTCCTTCGAGCAATTTTTC
65 GAGTTCTTTTATAACTTTGGTTCCTTAAAG-ATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * * **
337259 GAACATTCCATGCTGGGGAAA-CTGCAT-AGTTTTGTCTAAATTGTTTGTCATTTTACTATCAAC
129 GAACATTCCATGCTCGGAAAATC-GCATCA-TTTTGTCTAAATAGTTTGTCATTTTGTTATCAAC
* * ** * * *
337322 TTTCGATC-TTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTATTGGTTCTAAGATTAAC
192 TTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT-GGATGAAC
* * * * * *
337386 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTTCTTAAAATATTGAAGATGA
256 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG-
* * *
337451 AT-AATTCCTTCGAGTAATTTTCCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAAT
320 ATCCATTCCTTCGAGCAATTTT---TACA-T-C-TG--CG-GAAATCACATCATTTGGTCTAAAT
* * *
337515 AGTTTGTCATTTTGTAAAC-AGATCTTT-TTCTTTGAATT-AAAACTTATTTAGGTGAGAATTAT
376 AGTTTGTCATTTTGTAAACAAG-T-TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT-G
* **
337577 TTCTCTCTTGGTTCTGGGACGAACTTCCGAACTTGTCAAACTTTT---A----C----T---TT-
438 TT-TCTCTTGGTTCTTGGACGAACTTAAGAACTTGTCAAACTTTTACAAGTTCCTTTATAACTTC
* * * * * * * * *
337627 GGTACCTTAACA-TATTCAAGACAATCAACTGCTTCGAGCAATTTTCCGAACATTTCATTCTCGT
502 GGTTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
* * * *
337691 GAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTAAAAAAG-TTTGTGTCTTTGAATTAA
566 GAAATCGAATCATTTTGTCTAAATAGTTTGTCATTTTGTTAAAAAGTTTTG-GTCTTTGAATTAA
*
337755 AAAATT
630 AAACTT
* ** *
337761 ATTTACATGAGAATTGTTTGACTCTTGGTTCTTAGAC-GAACTTTCGAACTTGTCAAACTTTTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGCTGAACTTTCGAACTTGTCAAACTTTTAC
337825 GAGTTCTTTTATAACTTTGGTTCCTTAAAGAATTCAAGAC-ATTCCATTCCTTCGAGCAA-TTTT
65 GAGTTCTTTTATAACTTTGGTTCCTTAAAG-ATTCAAGACGA-TCCATTCCTTCGAGCAATTTTT
*
337888 CTGAACATTCCATGCTCAGG-AAATCACAT-ACTTTTGTCTAAATAGTTTGTCATTTTGTTATCA
128 C-GAACATTCCATGCTC-GGAAAATCGCATCA-TTTTGTCTAAATAGTTTGTCATTTTGTTATCA
** * ** * * *
337951 ACTTTTTATC-TTGAATTAAAAAGTTATTTATGTGAGAATTGTTTCTCTATTGCTTCTGAGATAA
190 ACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTG-GATGA
* * * * *
338015 ACTTCCAAAATTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAATATTGAAGAC
254 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* * * *
338080 AATCCATTCCTTCAAGCAATTTTTTGGAACATTCCATGCTCTAGAAATCGCATCATTTGGTCTAA
319 GATCCATTCCTTCGAGCAA-TTTTT---ACA-T-C-TG--C-GGAAATCACATCATTTGGTCTAA
* * * * *
338145 ATAGTTTTTCATTTTGTTATCAACTTTTGCTCTTTGAA-T---AACTTATTTACGTGAGAATTGT
374 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-
* ** ** * *
338206 TTCTCTCTTTGTTCTTGGACGAACTTTTGAACTTGTCAAACTTTTATGAGTTCCCTTATAACTTT
438 TT-TCTCTTGGTTCTTGGACGAACTTAAGAACTTGTCAAACTTTTACAAGTTCCTTTATAACTTC
* * * **
338271 GGTTCCTTAATGTATTCAAGATGATCCATT-CTTGCGAGCAATTTTTCGAACATTCCATGCACAA
502 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-CGAGCAATTTTTCGAACATTCCATGCTCGG
* * *
338335 GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT-CTAAAGAAGTTTTGGTCTTTGAATTAA
566 GAAATCGAATCATTTTGTCTAAATAGTTTGTCATTTTGTTAAA-AAGTTTTGGTCTTTGAATTAA
*
338399 AAACGT
630 AAACTT
* * *** *
338405 ATTTACGTGAGAATTGTTTCTCT-TGGGTTCTTGGATGAACTGAAGAACTTGTCAAACTTTTACA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACG
* * * * * *
338469 AGATCCTTTATTACTTAGGTTCCTTAAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTCC
66 AGTTCTTTTATAACTTTGGTTCCTT-AAAG-ATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* *** * * * * * * * *
338534 GAACATTCCATGTTAAAAAAATTGAATCATTTTGTGTAAATATTTTGTCATTCCTGTAAACAAGT
129 GAACATTCCATGCTCGGAAAATCGCATCATTTTGTCTAAATAGTTTGTCATT-TTGTTATCAACT
* *
338599 TTTGGTTTTTGAATTAAAAACTCATTTACATGAGAATTGTTTCTCTCTTGGTTCTGGGATGAACT
193 TTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT-GGATGAACT
* * *
338664 TCCGAATTTGTCAAACTTTT---A---C-----T---TT-GGTACCTTAAAGTATTCAAGACTAT
257 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * *
338714 CAATTCCTTCGAGCAAATTTCCGAACATTCCATTCT-CGTAAAATCACTTCATTTGGTCTAAATA
322 CCATTCCTTCGAGC-AATTT-------TTACA-TCTGCG-GAAATCACATCATTTGGTCTAAATA
* * *
338778 ATTTGTCATTTTGTAAAAAAG-TTTGTGTCTTTGAATTAAAAACTTAGTTACGTGAGAATTGTTT
377 GTTTGTCATTTTGTAAACAAGTTTTG-GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * ** * *
338842 CTCTATTAGTT-TTGAGACAAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
441 CTC--TTGGTTCTTG-GACGAACTTAAGAACTTGTCAAACTTTTACAAGTTCCTTTATAACTTCG
* * * * * *
338906 GTTCCTTAAAGAATTCAGGATGATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCTTGGGA
503 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
* * * *
338971 AATCGCAT-AGTTTTGTCTAAATAGTTTGTCATTTTGTTATAAACTTTTGATC-TTGAATTAAAA
568 AATCGAATCA-TTTTGTCTAAATAGTTTGTCATTTTGTTAAAAAGTTTTGGTCTTTGAATTAAAA
339034 ACTT
632 ACTT
* **
339038 ATTTACTTGAGAATTGTTTCTCTCTTGGTTAATGGCTGAACTTTCGAACTTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACG
* * * * *
339103 AGTTCTTTTTATAACTTTGATTCCTTAAAGACTTTAGGACGGTCCATTACTTCGAGCAATTTTTC
66 AGTTC-TTTTATAACTTTGGTTCCTTAAAGA-TTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * * *
339168 GAACATTTCATGCTTGGAAAATCGCAT-AGTTTAGTCTAAGTAGTTTGTCATTTTGTTATCAACT
129 GAACATTCCATGCTCGGAAAATCGCATCA-TTTTGTCTAAATAGTTTGTCATTTTGTTATCAACT
* * * * *
339232 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTCTTTCTCTCTTGGTTCATGGAGGAACA
193 TTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTC-TGGATGAACT
* * * * *
339297 TCCGAACTTGTAAAATTTTTACGAGTT-TTTATATAACTTAGGTTCCATAAAGTATTCAAGATGA
257 TCCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * *
339361 TCCATTCCTTCAAGCAA-TTTT-C-T-TG-GGAAATCACATCATTTTGTTTAAATAGTTTGTCAT
321 TCCATTCCTTCGAGCAATTTTTACATCTGCGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
* * ** * *
339421 ATTCTAAACAAGTTTTGGTCTTTGAATTAAAAAAGTATTTATGTGAGAATTGTTTCTCTTAGTTC
386 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTC
* * * * *
339486 TTGGATGAACTAAAGAACTTGTCAAACTTTTACAAGATCCTTTATTACTTCGGGT-CTTAAAAAG
451 TTGGACGAACTTAAGAACTTGTCAAACTTTTACAAGTTCCTTTATAACTTCGGTTCCTT--AAAG
* * ** *
339550 TATTCAAGACGATCCATTCCTTTGAACAATTTTTCGAACATTCCATGCTCGGGAAATTTAATTAT
514 TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGAATCAT
* * * * * *
339615 TTTATCTAAATATTTTGTCATTCTG-TAAGCATGTTTTTGTCTTTGAATTAAAAA-TT
579 TTTGTCTAAATAGTTTGTCATTTTGTTAA-AAAGTTTTGGTCTTTGAATTAAAAACTT
* * * *
339671 CATTGACGTGAGAATTGTTTCTCTCTTGGTT-TTAGGATGAAGTTTTGAACTTGTC--A-----A
1 -ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGCTGAACTTTCGAACTTGTCAAACTTTTA
* ** * *
339728 --A---C-TTT-T-ACTTTGGTACCTTAAACTCTTCAAGACGATCAATTCTTTCGAGCAATTTTT
64 CGAGTTCTTTTATAACTTTGGTTCCTTAAA-GATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* * * * *
339785 CGAACATTCCATCCTCGTG-AAATCGCATCATTTTCTCTAAATAGTTTGTCATTTTGTAAACAAA
128 CGAACATTCCATGCTCG-GAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTTATCAAC
* * * *
339849 TTTTTGTCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTATTGGACGAAC
192 TTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTT-CTGGATGAAC
** * * * * * *
339914 TTCTAAACTTATTAAACTTTTACGAGTTCTGTTATAACTTCAGTTCCTTAATGTATTCAAGACAA
256 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * *
339979 TCTATTCCTTCGAGCAATTTTTCGACAATTCCATGCACAAGAAATCGCATCATTTGGTCTAAATA
321 TCCATTCCTTCGAGCAATTTTT--AC-A-T-C-TG--C-GGAAATCACATCATTTGGTCTAAATA
* * * * *
340044 ATTTGTCATTTTCTAAATAAGTTTTGGTCTTTGAATTAAAAA-TGTATTTACGTGATAATTATTT
377 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTT
* * * * * *
340108 CTCTTGGGTTCTTGGACGAACTAAAGAGCTTGTCAAACTTTTACATGATCCTTTATTACTTTGGT
441 CTCTT-GGTTCTTGGACGAACTTAAGAACTTGTCAAACTTTTACAAGTTCCTTTATAACTTCGGT
* *
340173 TCCTTAAAAGTATTCAAGACGATCCATTCCTTCGAACAA-TTTTCTAAACATTCCATGCTCGGGA
505 TCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGA
* * * * *
340237 AATTGAATCATTTTGTCTAAATATTTTGTCATTCTG-TAAACATGTTTTGGGCTTTGAATTAAAA
568 AATCGAATCATTTTGTCTAAATAGTTTGTCATTTTGTTAAA-AAGTTTTGGTCTTTGAATTAAAA
**
340301 ACGC
632 ACTT
* * *
340305 ATTTATGTGAGAATTGTTTCTCTCTTGGTTCTGGGAC-GAACTTCCGAACTTGTC-AA-----AC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CTGAACTTTCGAACTTGTCAAACTTTTAC
* * * *
340363 ----TC---T-T-ACTTTGGTACCTTAAAGTATTCAAGACTATCAATTCCTTCGAGCAATTTTTT
65 GAGTTCTTTTATAACTTTGGTTCCTTAAAG-ATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * * * ** **
340419 GAACTTTCTATTCTCGTG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAAAAGG
129 GAACATTCCATGCTCG-GAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTTATCAACT
* * *
340482 ATTGTGTCCTTGAATTAAAAACTTATTTACATTAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
193 TTTG-GTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTC-TGGATGAAC
* * * *
340547 TTTCGAACCTGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGA
256 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * *
340612 TCCATTCCTTCGAG-TATTTTCCGAACATTCCATGCTCGGGTAATCGA-ATCATTTGGTCTAAAT
321 TCCATTCCTTCGAGCAATTTT---TACA-T-C-TG--C-GGAAATC-ACATCATTTGGTCTAAAT
* * * * *
340675 AGTTTGTCATTTTGTAAATAGGTTTTGGTCTTTAAATTAAAAACTT-TTTATGTGAGAATTATTT
376 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* ** ** *
340739 CTCTATTGGTTCTGGGACGAACTTCTGAACTTGTCAAACTTTTA-ATAGTTATTTTATAACTTTG
441 CTC--TTGGTTCTTGGACGAACTTAAGAACTTGTCAAACTTTTACA-AGTTCCTTTATAACTTCG
* * *
340803 GTTCCTCAAAGTATTCAAGACGATACATTCCTTCGAGCAA----T------TT---T-CTCGAGA
503 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
** * * *
340854 AATCGCTTCATTTGGTCTAAATAGTTTATCATTTT-CTAAACAAGTTTTGGTCTTTGAATTAAAA
568 AATCGAATCATTTTGTCTAAATAGTTTGTCATTTTGTTAAA-AAGTTTTGGTCTTTGAATTAAAA
*
340918 ACGT
632 ACTT
** * * ** * * *
340922 ATTTACGTGAGAATTGTTTCTCT-AGGGTTCTTGGATGAAATTAAGAACTAGTCAAACTTTCATG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACG
* * * * ** **
340986 AGATCCTTTATTACTTTGGTTCTTTAAAAGTATTCAAGGTGATCCATTCCTTC-AAAAATTTTTC
66 AGTTCTTTTATAACTTTGGTTCCTT-AAAG-ATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * * * * * ** **
341050 TAAACATTCCATGCTTGGGAAATTGAATCATTTTGTCTAAATA-TTCTGTCATTTTGTAAAGATG
129 -GAACATTCCATGCTCGGAAAATCGCATCATTTTGTCTAAATAGTT-TGTCATTTTGTTATCAAC
* * * **
341114 TTGTAGTCTTTGAATTAAAAACTCATTTACATGAGAATTGTTTCTCTCTTGGTTCTGGGACAAAC
192 TTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT-GGATGAAC
* * *
341179 TTCCTAACTTGTTAAACTTTT---A---C--TT-T-A--T---TACCTTAAAGTATTCAAGACGA
256 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * * *
341229 TCCACTCCTTCGAGAAATTTTTCGAACATTCCACGCTTAGGAAATCGCATCATTTGGTCTAAATA
321 TCCATTCCTTCGAGCAATTTTT---ACA-T-C-TGC---GGAAATCACATCATTTGGTCTAAATA
* *
341294 GTTTGTCATTTTGTAAAAAAG-TTTGTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTT
377 GTTTGTCATTTTGTAAACAAGTTTTG-GTCTTTGAATTAAAAACTTATTTACGTGAGAATT-GTT
* ** * *
341358 CTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTTCATTT-TAACTTCG
440 -TCTCTTGGTTCTTGGACGAACTTAAGAACTTGTCAAACTTTTACAAG-TTCCTTTATAACTTCG
* * * * * * ***
341422 GTTCCTTAAAGTATTCAAGACGATCCATTTCTTCAAGTAATTTTCCAAACATTCCATGCACAATA
503 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
* * * **
341487 AATC-ACATCATTTGGTCTATATAGTTTGTCATTTTGTAAAAAAAAATTT-GTCTTTGAATTAAA
568 AATCGA-ATCATTTTGTCTAAATAGTTTGTCATTTTGT-TAAAAAGTTTTGGTCTTTGAATTAAA
341550 AACTT
631 AACTT
* * *
341555 ATTTACGTGAGAATTGTTTCTCTATTGGTTC-TGAGATGAACTTCCGAACTTGTCAAACTTTTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-GCTGAACTTTCGAACTTGTCAAACTTTTAC
* * * * * * *
341619 GAGTTCTATTATAACTTCGATTGCTTAAAATATTGAAGACGATCCATTCCTTCTAGCAA-TTTTC
65 GAGTTCTTTTATAACTTTGGTTCCTT-AAAGATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * * * * *
341683 TGAGCATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAGTAGTTTTTCATTTTGTTATAAACT
129 -GAACATTCCATGCTCGGAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTTATCAACT
* * * * *
341748 TTT-GTCTTAGAATTGAAAACTTA-TT---T--G-A---TTTATCTCTTGGTTTTTGAATGAACT
193 TTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGG-TTCTGGATGAACT
** * * * * *
341802 TTTGAACTTGTCAAACTTTTACGGGTT-TCGTTATAACTTCGATTCATTAATGTATTCAAGACGA
257 TCCGAACTTGTCAAACTTTTACGAGTTCT-TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * * *
341866 CCCATTTCTTCGAGCAATTTTTCTAACTTTCCATGCACAAGAAATCACATC-TTTGGTCTAAATA
321 TCCATTCCTTCGAGCAA-TTTT-T-AC-AT-C-TG--C-GGAAATCACATCATTTGGTCTAAATA
* * * * * *
341930 GCTTGTCATTTTGTAAACAAATTTTTGTATTTGAATTAAAAACTTATTTATGTGATAATTGTTTC
377 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* ** * * * *
341995 TCTATTGGTTC-TGAGACAAACTTTCGAACTTGTTAAACCTTTACAAGTTCTTTTATAACTTTGG
442 TC--TTGGTTCTTG-GACGAACTTAAGAACTTGTCAAACTTTTACAAGTTCCTTTATAACTTCGG
* * * * *
342059 TTCCTTAAAGAATTCAAGATGATCCATTCCTTCGAGCAATTTTTTGAACAATCCATGTTCGGGAA
504 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAA
* ** * * * ** * * *
342124 ATCGCATTGTTTTGTCTACATACTTTTTCATTTTGTTATCAACTTTTGAT-ATTGAATTAAAAAC
569 ATCGAATCATTTTGTCTAAATAGTTTGTCATTTTGTTAAAAAGTTTTGGTCTTTGAATTAAAAAC
342188 TT
634 TT
* *
342190 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AAACTTTTGAACTTGTCAAACTTTTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CTGAACTTTCGAACTTGTCAAACTTTTAC
* * * * *
342254 GACTTCTTTTATAACTTCGATTCCTTAAAGAATTCAAGACTATCCATTCCTTTGAGCAATTTTTC
65 GAGTTCTTTTATAACTTTGGTTCCTTAAAG-ATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * *
342319 AAACATTCCATGCTCGGAAAATCGCAT-AGTTTAGTCTAAAAAGTTTGTCATTTTGTTATCAACT
129 GAACATTCCATGCTCGGAAAATCGCATCA-TTTTGTCTAAATAGTTTGTCATTTTGTTATCAACT
* ** *
342383 TTTGGTCTTT-AATTTAAAAACTTATTTACATGAGAATTATTTCTCTCAAGGTTCATGGACGAAC
193 TTTGGTCTTTGAA-TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTC-TGGATGAAC
* * * *
342447 AT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCATAAATTATTCAAGACGA
256 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* ** * *
342511 TCCATTCCTTCAAGCAA-TTTT-C-TC--CGGAAATTGCATCATTTTGT-TAGATAGTTTGTCAT
321 TCCATTCCTTCGAGCAATTTTTACATCTGCGGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
* * * * *
342570 ATTCTAAACAAGTTTTGGTCTTTGAACTAGAAA-TGTATTTACGTGAGAATTGTTTCTATTGGTT
386 TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTTGGTT
* * *
342634 CTTGGACGAA-TTGAAGAACTTGTCAAACTTTTACATGATCCTTTATTACTTCGGTT-CTATAAA
450 CTTGGACGAACTT-AAGAACTTGTCAAACTTTTACAAGTTCCTTTATAACTTCGGTTCCT-T-AA
* * * * * * *
342697 AGTATTCAAGATGATCCATTCCTTTGAACAAATTTTCAAACATTTCATGCTCGGGAAATTGAATC
512 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGAATC
* * * * *
342762 ATTTTGTCTAAAAATTTTGTCATTCTG-TAAACATGTTTTGGTCTTTGAATTAAAAACTA
577 ATTTTGTCTAAATAGTTTGTCATTTTGTTAAA-AAGTTTTGGTCTTTGAATTAAAAACTT
* * * *
342821 ATTTA--T--G---TGATTCTCTCCTGGTTCTGGGAC-AAACTTTCGAACTTGTC--A-----A-
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CTGAACTTTCGAACTTGTCAAACTTTTAC
* * * *
342870 -A---C-TTT-T-ACTTTGGTACCTTAAAGTAGTCAAGACGATCAATTCCTTCGAGGAA-TTTTC
65 GAGTTCTTTTATAACTTTGGTTCCTTAAAG-ATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * * * * * ** *
342927 TGAACATTCCATTCTCGTG-AAATCACATCATTTGGTCTAAATAGTTCGCCATTTT-ATAAAAAA
129 -GAACATTCCATGCTCG-GAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTTATCAAC
* * * *
342990 GTTTGTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA
192 TTTTG-GTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTC-TGGATGAA
* * ** * * *
343055 CTTCTGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTAAGTTCCTTAAAGTATTTAATATG
255 CTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * *
343120 ATACATTCCTTCGAGCAATTTTTCAAACATTCAATGCTCGGGTAATTGA-ATCATTTGGTCTAAA
320 ATCCATTCCTTCGAGCAATTTTT---ACA-TC--TG--C-GG-AAATCACATCATTTGGTCTAAA
* * *
343184 TAGTTTGTCATTTTGTAAACAGGTTTTGGTCTTTAAATTAAACACTT-TTTACGTGAGAATTGTT
375 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * * * * * *
343248 TCTCTACTGGTTCTGGGACGAAGTTCCA-AACTTATAAAACTTTTACCAGTTCTTTTACAACTTC
440 TCTCT--TGGTTCTTGGACGAACTT-AAGAACTTGTCAAACTTTTACAAGTTCCTTTATAACTTC
* * * * *
343312 TGTTCGTTAAAGTATTCAAGATGATGCATTCCTTCAAGCAA----T------TT---T-CTCGGG
502 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGG
** * * *
343363 AAATCGCTTCATTTGGTCTAAATAGTTTGTCATTTT-CTAAACAAGTTTTGGTCTTTAAATTAAA
567 AAATCGAATCATTTTGTCTAAATAGTTTGTCATTTTGTTAAA-AAGTTTTGGTCTTTGAATTAAA
*
343427 AA-TGA
631 AACT-T
* ** *
343432 ATTTACGTGAGAATTGTTTCTCT-TGGGTTCTTGGAC-GAACTTAAGAACTTGTCAAACTTTCAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CTGAACTTTCGAACTTGTCAAACTTTTAC
* * *
343495 GAGATC-TTTATTACTTTGGTTCCTTAAAAGTATTCAAGACGATCCATTCCTTCGA-AAATTTCT
65 GAGTTCTTTTATAACTTTGGTTCCTT-AAAG-ATTCAAGACGATCCATTCCTTCGAGCAATTT-T
* * * * * ** **
343558 T-GAACACTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAAGATG
127 TCGAACATTCCATGCTCGGAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTTATCAAC
** * ** *
343622 TTTTACTCTTTGAATTAAAAACTCATTTATGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAAC
192 TTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT-GGATGAAC
* * *
343687 TTTCGAACTTGTCAAACTTTT---A---C-----T---TT-GGTT-TTTGAAACTATTCAAGACG
256 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACG
* * * * * * *
343736 ATCAATT-TTTTGAAC-A---GTCCATTCT-CATGAAATCACATCATTTGGTCTAAATAGTTTGT
320 ATCCATTCCTTCGAGCAATTTTTACA-TCTGC-GGAAATCACATCATTTGGTCTAAATAGTTTGT
* * *
343795 CATTTTGTAAAAAAG-TTTGTTTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCT
383 CATTTTGTAAACAAGTTTTG-GTCTTTGAATTAAAAACTTATTTACGTGAGAATT-GTT-TCTCT
* * ** *
343859 TGGTTCTTGGACGAACTTCCA-AACTGGTCAAACTTTTATGAGTTCCTTTATAACTTTGGTTCCT
445 TGGTTCTTGGACGAACTT-AAGAACTTGTCAAACTTTTACAAGTTCCTTTATAACTTCGGTTCCT
* * * * *
343923 TAAAGTATTCAAGATGATCCATTCATTCGAGCAATTTTTTGAACATTCCATGCTTGGGTAATCGA
509 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGA
* * * * *
343988 ATTATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAGGTTTTGGTCTTTAAATTAAACACTT
574 ATCATTTTGTCTAAATAGTTTGTCATTTTGTTAAA-AAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * * * * * * *
344050 -TTTACGTGAGAATTGATTCTCTATAGGTTGTGGGATGATCTTCCGAACTTATTAAACTTTTACT
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACG
* * *
344114 AGTTCTTTTATAACTTAT-GTTCCTTAAAGTATTCAAGATGATGCATTCCTTCGAGTAATTTT
66 AGTTCTTTTATAACTT-TGGTTCCTTAAAG-ATTCAAGACGATCCATTCCTTCGAGCAATTTT
344176 CTCGTGAAAT
Statistics
Matches: 5234, Mismatches: 848, Indels: 677
0.77 0.13 0.10
Matches are distributed among these distances:
602 8 0.00
603 54 0.01
604 97 0.02
605 2 0.00
606 6 0.00
608 19 0.00
609 134 0.03
610 74 0.01
611 76 0.01
612 2 0.00
613 1 0.00
614 3 0.00
615 12 0.00
616 41 0.01
617 175 0.03
618 421 0.08
619 124 0.02
620 13 0.00
621 7 0.00
622 38 0.01
623 5 0.00
624 71 0.01
625 77 0.01
626 52 0.01
627 6 0.00
628 9 0.00
629 137 0.03
630 148 0.03
631 605 0.12
632 545 0.10
633 805 0.15
634 480 0.09
635 229 0.04
636 210 0.04
637 57 0.01
638 8 0.00
639 4 0.00
640 4 0.00
642 3 0.00
643 66 0.01
644 193 0.04
645 89 0.02
646 86 0.02
647 5 0.00
648 33 0.01
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (635 bp):
ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACG
AGTTCTTTTATAACTTTGGTTCCTTAAAGATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
ACATTCCATGCTCGGAAAATCGCATCATTTTGTCTAAATAGTTTGTCATTTTGTTATCAACTTTT
GGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTGGATGAACTTCCG
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCGAGCAATTTTTACATCTGCGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT
AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGA
CGAACTTAAGAACTTGTCAAACTTTTACAAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAA
GACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGAATCATTTTGTCT
AAATAGTTTGTCATTTTGTTAAAAAGTTTTGGTCTTTGAATTAAAAACTT
Found at i:341305 original size:417 final size:415
Alignment explanation
Indices: 337132--344113 Score: 5229
Period size: 417 Copynumber: 16.7 Consensus size: 415
337122 TTAAAAGTTC
* ** * **
337132 ATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACATGTCAAACTTTTAAA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
* * * * *
337195 AGTTCTTTTATAACTTCGGTTCGTTAAAGAATTCAAGATGATCCATTCCTTCGAGCAATTTTTCG
66 AGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAA-TTTTCA
* * * * * * *
337260 AACATTCCATGCTGGGGAAACTGCAT-AGTTTTGTCTAAATTGTTTGTCATTTTACT-ATCAACT
130 AACATTCCATGCTCGGGAAATTGAATCA-TTTTGTCTAAATAGTTTGTCATTTT-GTAAACAAGT
* * * * ** **
337323 TTCGATC-TTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTATTGGTTCTAAGATTAACT
193 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACT
* * * * *
337387 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTTCTTAAAATATTGAAGATGAA
258 TCCGAACTTGTCAAACTTTT---A---C-TTTAT---TAC-----CTTAAAGTATTCAAGACG-A
* * * * *
337452 T-AATTCCTTCGAGTAATTTTCCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATA
307 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTAG-GAAATCGCATCATTTGGTCTAAATA
*
337516 GTTTGTCATTTTGTAAAC-AGATCTTT-TTCTTTGAATT-AAAACTT
371 GTTTGTCATTTTGTAAACAAG-T-TTTGGTCTTTGAATTAAAAACTT
* * * * **
337560 ATTTAGGTGAGAATTATTTCTCTCTTGGTTCTGGGACGAACTTCCGAACTTGTCAAACTTTT---
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
* ** * * * *
337622 A----C----T---TT-GGTACCTTAACA-TATTCAAGACAATCAACTGCTTCGAGCAATTTTCC
66 AGTTCCTTTATAACTTCGGTTCCTTAA-AGTATTCAAGATGATCCATTCCTTCGAACAATTTT-C
* * * * * * * * *
337674 GAACATTTCATTCTCGTGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTAAAAAAG-T
129 AAACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * ** **
337738 TTGTGTCTTTGAATTAAAAAATTATTTACATGAGAATTGTTTGACTCTTGGTTCTTAGACGAACT
194 TTG-GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACT
* * *
337803 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGAATTCAAGAC-AT
258 TCCGAACTTGTCAAACTTTT---A---C--TT-T-A---T--TACCTTAAAGTATTCAAGACGA-
* *
337867 TCCATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTCAGGAAATCACAT-ACTTTTGTCTAAA
307 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCT-AGGAAATCGCATCA-TTTGGTCTAAA
* * * ** *
337930 TAGTTTGTCATTTTGTTATCAACTTTTTATC-TTGAATTAAAAAGTT
369 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * *
337976 ATTTATGTGAGAATTGTTTCTCTATTGCTTC-TGAGATAAACTTCCAA-AA-TTGTCAAACTTTT
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-GATGAACTT--AAGAACTTGTCAAACTTTT
* * * * **
338038 ACGAGTTCTTTTATAACTTCTGTTCCTTAAAATATTGAAGACAATCCATTCCTTC-AAGCAATTT
63 ACGAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAA-CAA--T
** ** * * * * * *
338102 TTTGGAACATTCCATGCTCTAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTTATCA
125 TTTCAAACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACA
* * * *
338167 ACTTTTGCTCTTTGAA-T---AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGA
190 AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGA
** * * *
338228 ACTTTTGAACTTGTCAAACTTTTATGAGTTCCCTTATAACTTTGGTTCCTTAATGTATTCAAGAT
255 ACTTCCGAACTTGTCAAAC-TTT-T-A-----CTT-T-A---T--TACCTTAAAGTATTCAAGAC
* *
338293 GATCCATT-CTTGCGAGCAATTTTTCGAACATTCCATGCACAAGAAATCGCATCATTTGGTCTAA
305 GATCCATTCCTT-CGAGCAATTTTTCGAACATTCCATGC-TAGGAAATCGCATCATTTGGTCTAA
* * *
338357 ATAGTTTGTCATTTTCTAAAGAAGTTTTGGTCTTTGAATTAAAAACGT
368 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * *
338405 ATTTACGTGAGAATTGTTTCTCT-TGGGTTCTTGGATGAACTGAAGAACTTGTCAAACTTTTACA
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
* * * *
338469 AGATCCTTTATTACTTAGGTTCCTTAAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTCC
66 AGTTCCTTTATAACTTCGGTTCCTT-AAAGTATTCAAGATGATCCATTCCTTCGAACAATTTT-C
* * **** * * *
338534 GAACATTCCATGTTAAAAAAATTGAATCATTTTGTGTAAATATTTTGTCATTCCTGTAAACAAGT
129 AAACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATT-TTGTAAACAAGT
* * * *
338599 TTTGGTTTTTGAATTAAAAACTCATTTACATGAGAATTGTTTCTCTCTTGGTTCTGGGATGAACT
193 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACT
* ** * *
338664 TCCGAATTTGTCAAACTTTTACTTTGGTACCTTAAAGTATTCAAGACTATCAATTCCTTCGAGCA
258 TCCGAACTTGTCAAACTTTTACTTTATTACCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * * * *
338729 AATTTCCGAACATTCCATTCTCGTAAAATCACTTCATTTGGTCTAAATAATTTGTCATTTTGTAA
323 ATTTTTCGAACATTCCATGCTAG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
*
338794 AAAAG-TTTGTGTCTTTGAATTAAAAACTT
387 ACAAGTTTTG-GTCTTTGAATTAAAAACTT
* * * ** **
338823 AGTTACGTGAGAATTGTTTCTCTATTAGTT-TTGAGACAAACTTCTGAACTTGTCAAACTTTTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-GATGAACTTAAGAACTTGTCAAACTTTTAC
* * * *
338887 GAGTTCTTTTATAACTTCGGTTCCTTAAAGAATTCAGGATGATCCATTCCTTCGAGCAATTTTCC
65 GAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAATTTT-C
* * * * *
338952 AAACATTCCATGCTTGGGAAATCGCAT-AGTTTTGTCTAAATAGTTTGTCATTTTGTTATA-AAC
129 AAACATTCCATGCTCGGGAAATTGAATCA-TTTTGTCTAAATAGTTTGTCATTTTG-TAAACAAG
* * *
339015 TTTTGATC-TTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTAAT-GG-CTGA
192 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTGGGAC-GA
* * *
339077 ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTTATAACTTTGATTCCTTAAAG-ACTTTAGG
255 ACTTCCGAACTTGTCAAACTTTT---A---C---TT-T-A--TT-A--CCTTAAAGTA-TTCAAG
* * * * *
339141 ACGGTCCATTACTTCGAGCAATTTTTCGAACATTTCATGCTTGGAAAATCGCAT-AGTTTAGTCT
303 ACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTAGG-AAATCGCATCA-TTTGGTCT
* * * *
339205 AAGTAGTTTGTCATTTTGTTATCAACTTTTGGTCTTTGAATTAAAAACTT
366 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * ** * *
339255 ATTTACGTGAAAATTCTTTCTCTCTTGGTTCATGGAGGAACATCCGAACTTGTAAAATTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
* * *
339320 AGTT-TTTATATAACTTAGGTTCCATAAAGTATTCAAGATGATCCATTCCTTC-AAGCAA--TT-
66 AGTTCCTT-TATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAA-CAATTTTC
* * * *
339380 -----TT-C-T--T-GGGAAA-TCACATCATTTTGTTTAAATAGTTTGTCATATTCTAAACAAGT
129 AAACATTCCATGCTCGGGAAATTGA-ATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGT
** * * * *
339434 TTTGGTCTTTGAATTAAAAAAGTATTTATGTGAGAATTG-TT-TCTCTTAGTTCTTGGATGAACT
193 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACT
***
339497 AAAGAACTTGTCAAACTTTTACAAGATCCTTTATTACTTCGGGTCTTAAAAAGTATTCAAGACGA
258 TCCGAACTTGTCAAACTTTT-----A--CTTTATTA---C----CTT--AAAGTATTCAAGACGA
* * * *** * **
339562 TCCATTCCTTTGAACAATTTTTCGAACATTCCATGCTCGGGAAATTTAATTATTTTATCTAAATA
307 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT-AGGAAATCGCATCATTTGGTCTAAATA
* * * * *
339627 TTTTGTCATTCTGTAAGCATGTTTTTGTCTTTGAATTAAAAA-TT
371 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * **
339671 CATTGACGTGAGAATTGTTTCTCTCTTGGTT-TTAGGATGAAGTTTTGAACTTGTCAAACTTTT-
1 -ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGATGAACTTAAGAACTTGTCAAACTTTTA
* * * * * * *
339734 --A----C----T---TT-GGTACCTTAAACTCTTCAAGACGATCAATTCTTTCGAGCAATTTTT
64 CGAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAA-TTTT
* * * * * * *
339785 CGAACATTCCATCCTCGTGAAATCGCATCATTTTCTCTAAATAGTTTGTCATTTTGTAAACAAAT
128 CAAACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* * * *
339850 TTTTGTCTTTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACT
193 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACT
** * * * *
339915 TCTAAACTTATTAAACTTTTACGAGTTCTGTTATAACTTCAGTTCCTTAATGTATTCAAGACAAT
258 TCCGAACTTGTCAAACTTTT---A---C--TT-T-A-TT-A---CCTTAAAGTATTCAAGACGAT
* * *
339980 CTATTCCTTCGAGCAATTTTTCG-ACAATTCCATGCACAAGAAATCGCATCATTTGGTCTAAATA
308 CCATTCCTTCGAGCAATTTTTCGAAC-ATTCCATGC-TAGGAAATCGCATCATTTGGTCTAAATA
* * *
340044 ATTTGTCATTTTCTAAATAAGTTTTGGTCTTTGAATTAAAAA-TGT
371 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT-T
* * * * * *
340089 ATTTACGTGATAATTATTTCTCT-TGGGTTCTTGGACGAACTAAAGAGCTTGTCAAACTTTTAC-
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
* * * *
340152 ATGATCCTTTATTACTTTGGTTCCTTAAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTC
66 A-GTTCCTTTATAACTTCGGTTCCTT-AAAGTATTCAAGATGATCCATTCCTTCGAACAATTTTC
* * *
340217 TAAACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATATTTTGTCATTCTGTAAACATGT
129 -AAACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* ** *
340282 TTTGGGCTTTGAATTAAAAACGCATTTATGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACT
193 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACT
* ** * *
340347 TCCGAACTTGTCAAACTCTTACTTTGGTACCTTAAAGTATTCAAGACTATCAATTCCTTCGAGCA
258 TCCGAACTTGTCAAACTTTTACTTTATTACCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * *
340412 ATTTTTTGAACTTTCTATTCTCGTGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
323 ATTTTTCGAACATTCCATGCTAG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
** *
340477 A-AAGGATTGTGTCCTTGAATTAAAAACTT
387 ACAAGTTTTG-GTCTTTGAATTAAAAACTT
* * ** *
340506 ATTTACATTAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACCTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
** *
340571 AGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCG-AGTATTTTCCG
66 AGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAATTTT-CA
* * * * *
340635 AACATTCCATGCTCGGGTAATCGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAGGTTT
130 AACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *
340700 TGGTCTTTAAATTAAAAACTT-TTTATGTGAGAATTATTTCTCTATTGGTTCTGGGACGAACTTC
195 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACTTC
* * * *
340764 TGAACTTGTCAAACTTTTAATAGTTATTTTATAACTTTGGTTCCTCAAAGTATTCAAGACGATAC
260 CGAACTTGTCAAACTTTTACT--TTA---T-T-A--------CCTTAAAGTATTCAAGACGATCC
*
340829 ATTCCTTCGAGCAA-TTTT----C--T-C--G--A-GAAATCGCTTCATTTGGTCTAAATAGTTT
310 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
340881 ATCATTTTCTAAACAAGTTTTGGTCTTTGAATTAAAAACGT
375 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
** * * * *
340922 ATTTACGTGAGAATTGTTTCTCT-AGGGTTCTTGGATGAAATTAAGAACTAGTCAAACTTTCATG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
* * * * * *
340986 AGATCCTTTATTACTTTGGTTCTTTAAAAGTATTCAAGGTGATCCATTCCTTC-AAAAATTTTTC
66 AGTTCCTTTATAACTTCGGTTCCTT-AAAGTATTCAAGATGATCCATTCCTTCGAACAA-TTTTC
* * *
341050 TAAACATTCCATGCTTGGGAAATTGAATCATTTTGTCTAAATA-TTCTGTCATTTTGTAAAGATG
129 -AAACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTT-TGTCATTTTGTAAACAAG
* * * * *
341114 TTGTAGTCTTTGAATTAAAAACTCATTTACATGAGAATTGTTTCTCTCTTGGTTCTGGGACAAAC
192 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAAC
* * * *
341179 TTCCTAACTTGTTAAACTTTTACTTTATTACCTTAAAGTATTCAAGACGATCCACTCCTTCGAGA
257 TTCCGAACTTGTCAAACTTTTACTTTATTACCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
*
341244 AATTTTTCGAACATTCCACGCTTAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
322 AATTTTTCGAACATTCCATGC-TAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
341309 AAAAAG-TTTGTGTCTTTGAATTAAAAACTT
386 AACAAGTTTTG-GTCTTTGAATTAAAAACTT
* **
341339 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
* * * *
341404 AGTTTCATTT-TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTC-AAGTAATTTTC
66 AG-TTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAA-CAATTTT-
* *** * * * *
341467 CAAACATTCCATGCACAATAAA-TCACATCATTTGGTCTATATAGTTTGTCATTTTGTAAAAAAA
128 CAAACATTCCATGCTCGGGAAATTGA-ATCATTTTGTCTAAATAGTTTGTCATTTTGT-AAACAA
** * * *
341531 AATTT-GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTGAGATGAA
191 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAA
* *
341595 CTTCCGAACTTGTCAAACTTTTACGAGTTCTATTATAACTTCGATTGCTTAAAATATTGAAGACG
256 CTTCCGAACTTGTCAAACTTTTAC---TT-TA-T-T-A---C-----CTTAAAGTATTCAAGACG
* * * * *
341660 ATCCATTCCTTCTAGCAA-TTTTCTGAGCATTCCATGCTCGAAAAATCGCATCATTTGGTCTAAG
306 ATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTAG-GAAATCGCATCATTTGGTCTAAA
* * * * *
341724 TAGTTTTTCATTTTGTTATA-AACTTTT-GTCTTAGAATTGAAAACTT
369 TAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * **
341770 A-TT---T--G-A---TTTATCTCTTGGTTTTTGAATGAACTTTTGAACTTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
* * * * * * * * * * *
341825 GGTTTCGTTATAACTTCGATTCATTAATGTATTCAAGACGACCCATTTCTTCGAGCAATTTTTCT
66 AGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAA-TTTTCA
* * ** * * * *
341890 AACTTTCCATGCACAAGAAA-TCACATC-TTTGGTCTAAATAGCTTGTCATTTTGTAAACAAATT
130 AACATTCCATGCTCGGGAAATTGA-ATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * * * * * *
341953 TTTGTATTTGAATTAAAAACTTATTTATGTGATAATTGTTTCTCTATTGGTTCTGAGACAAACTT
194 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACTT
* * * *
342018 TCGAACTTGTTAAACCTTTACAAGTTCTTTTATAACTTTGGTT-CCTTAAAGAATTCAAGATGAT
259 CCGAACTTG-T----C---A-AA---C-TTT-T-ACTTT-ATTACCTTAAAGTATTCAAGACGAT
* * * * ** * * *
342082 CCATTCCTTCGAGCAATTTTTTGAACAATCCATGTTCGGGAAATCGCATTGTTTTGTCTACATAC
308 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT-AGGAAATCGCATCATTTGGTCTAAATAG
* * * * * *
342147 TTTTTCATTTTGTTATCAACTTTTGAT-ATTGAATTAAAAACTT
372 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
** **
342190 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTTGAACTTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
* * * * * *
342255 ACTTCTTTTATAACTTCGATTCCTTAAAGAATTCAAGACT-ATCCATTCCTTTGAGCAATTTTTC
66 AGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGA-TGATCCATTCCTTCGAACAA-TTTTC
* * * * * * * *
342319 AAACATTCCATGCTCGGAAAATCGCAT-AGTTTAGTCTAAAAAGTTTGTCATTTTGTTATCAACT
129 AAACATTCCATGCTCGGGAAATTGAATCA-TTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* * **
342383 TTTGGTCTTT-AATTTAAAAACTTATTTACATGAGAATTATTTCTCTCAAGGTTCAT-GGACGAA
193 TTTGGTCTTTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGGACGAA
* * * *
342446 CAT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCATAAATTATTCAAGACG
256 CTTCCGAACTTGTCAAACTTTT---A---C--TT-T-A---T--TACCTTAAAGTATTCAAGACG
* * * *
342510 ATCCATTCCTTCAAGCAA-TTTT----C--T-C---C--GGAAATTGCATCATTTTGT-TAGATA
306 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTAGGAAATCGCATCATTTGGTCTAAATA
* * * *
342561 GTTTGTCATATTCTAAACAAGTTTTGGTCTTTGAACTAGAAA-TGT
371 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT-T
* *
342606 ATTTACGTGAGAATTG-TT-TCTATTGGTTCTTGGACGAA-TTGAAGAACTTGTCAAACTTTTAC
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT-AAGAACTTGTCAAACTTTTAC
* * *
342668 -ATGATCCTTTATTACTTCGGTT-CTATAAAAGTATTCAAGATGATCCATTCCTTTGAACAAATT
65 GA-GTTCCTTTATAACTTCGGTTCCT-T-AAAGTATTCAAGATGATCCATTCCTTCGAAC-AATT
* * * * *
342731 TTCAAACATTTCATGCTCGGGAAATTGAATCATTTTGTCTAAAAATTTTGTCATTCTGTAAACAT
126 TTCAAACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * *
342796 GTTTTGGTCTTTGAATTAAAAACTAATTTA--T--G---TGATTCTCTCCTGGTTCTGGGACAAA
191 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAA
* ** * *
342854 CTTTCGAACTTGTCAAACTTTTACTTTGGTACCTTAAAGTAGTCAAGACGATCAATTCCTTCGAG
256 CTTCCGAACTTGTCAAACTTTTACTTTATTACCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * * *
342919 GAA-TTTTCTGAACATTCCATTCTCGTGAAATCACATCATTTGGTCTAAATAGTTCGCCATTTTA
321 CAATTTTTC-GAACATTCCATGCTAG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
*
342983 TAAAAAAG-TTTGTGTCTTTGAATTAAAAACTT
384 TAAACAAGTTTTG-GTCTTTGAATTAAAAACTT
* * **
343015 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
** * * * *
343080 AGTTCCTTTATAACTTAAGTTCCTTAAAGTATTTAATATGATACATTCCTTCGAGCAATTTTTCA
66 AGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAA-TTTTCA
* * * *
343145 AACATTCAATGCTCGGGTAATTGAATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAGGTTT
130 AACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * *
343210 TGGTCTTTAAATTAAACACTT-TTTACGTGAGAATTGTTTCTCTAC-TGGTTCTGGGACGAAGTT
195 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTGGGACGAACTT
* * * * * *
343273 CCAAACTTATAAAACTTTTACCAGTTCTTTTACAACTTCTGTTCGTTAAAGTATTCAAGATGATG
259 CCGAACTTGTCAAACTTTTA-C--TT-TATT---A---C----C-TTAAAGTATTCAAGACGATC
* *
343338 CATTCCTTCAAGCAA-TTTT----C--T-C--G---GGAAATCGCTTCATTTGGTCTAAATAGTT
309 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTAGGAAATCGCATCATTTGGTCTAAATAGTT
* * *
343390 TGTCATTTTCTAAACAAGTTTTGGTCTTTAAATTAAAAA-TGA
374 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT-T
* * *
343432 ATTTACGTGAGAATTGTTTCTCT-TGGGTTCTTGGACGAACTTAAGAACTTGTCAAACTTTCACG
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
* * * * *
343496 AGAT-CTTTATTACTTTGGTTCCTTAAAAGTATTCAAGACGATCCATTCCTTCGAA-AATTTCTT
66 AGTTCCTTTATAACTTCGGTTCCTT-AAAGTATTCAAGATGATCCATTCCTTCGAACAATTT-TC
* * * *
343559 GAACACTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAAGATGTT
129 AAACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
** * *
343624 TTACTCTTTGAATTAAAAACTCATTTATGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACTT
194 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACTT
* * * *
343689 TCGAACTTGTCAAACTTTTACTTTGGTT--TTTGAAACTATTCAAGACG----A-----T----C
259 CCGAACTTGTCAAACTTTTACTTT-ATTACCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * *
343739 AATTTTTTGAACAGTCCATTCTCATGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
322 AATTTTTCGAACATTCCATGCT-AGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
343804 AAAAAG-TTTGTTTCTTTGAATTAAAAACTT
386 AACAAGTTTTG-GTCTTTGAATTAAAAACTT
* * * * *
343834 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCA-AACTGGTCAAACTTTTAT
1 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT-AAGAACTTGTCAAACTTTTAC
* * * *
343898 GAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCATTCGAGCAATTTTTT
65 GAGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAA-TTTTC
* * * * * * *
343963 GAACATTCCATGCTTGGGTAATCGAATTATTTGGTCTAAATAGTTTGTCATTTTGTAAACAGGTT
129 AAACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * * * * * * *
344028 TTGGTCTTTAAATTAAACACTT-TTTACGTGAGAATTGATTCTCTATAGGTTGTGGGATGATCTT
194 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACTT
* *
344092 CCGAACTTATTAAACTTTTACT
259 CCGAACTTGTCAAACTTTTACT
344114 AGTTCTTTTA
Statistics
Matches: 5321, Mismatches: 858, Indels: 775
0.77 0.12 0.11
Matches are distributed among these distances:
388 3 0.00
389 4 0.00
392 1 0.00
393 1 0.00
394 36 0.01
395 1 0.00
396 1 0.00
397 1 0.00
399 1 0.00
400 3 0.00
401 20 0.00
402 110 0.02
403 156 0.03
404 102 0.02
405 6 0.00
406 2 0.00
407 2 0.00
408 41 0.01
409 75 0.01
410 112 0.02
411 66 0.01
412 8 0.00
413 15 0.00
414 68 0.01
415 447 0.08
416 806 0.15
417 873 0.16
418 468 0.09
419 112 0.02
420 194 0.04
421 133 0.02
422 14 0.00
423 15 0.00
424 8 0.00
425 11 0.00
426 7 0.00
427 16 0.00
428 261 0.05
429 109 0.02
430 246 0.05
431 188 0.04
432 497 0.09
433 78 0.01
434 1 0.00
435 2 0.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (415 bp):
ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTTACG
AGTTCCTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAACAATTTTCAA
ACATTCCATGCTCGGGAAATTGAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACTTCC
GAACTTGTCAAACTTTTACTTTATTACCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
TTTCGAACATTCCATGCTAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
GTTTTGGTCTTTGAATTAAAAACTT
Found at i:341974 original size:205 final size:208
Alignment explanation
Indices: 341210--343709 Score: 1240
Period size: 215 Copynumber: 11.9 Consensus size: 208
341200 ACTTTATTAC
* * * * ** *
341210 CTTAAAGTATTCAAGACGATCCACTCCTTCGAGAAATTTTTCGAACATTCCACGCTTAGGAAATC
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTAACATTCCATGCACAAGAAATC
* *
341275 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTGTGTCTTTGAATTAAAAACTTA
66 ACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAA-TTTTTGTCTTTGAATTAAAAACTTA
* * *
341340 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGA
130 TTTA--T-AG-A--ATTTATCTCTTGGTTTTTGAATGAACTTTCGAACTTGTCAAACTTTTACGA
* *
341405 GTTTCATTTTAACTTCGGTT
189 GTTTCATTATAACTTCGATT
* * * * * *
341425 CCTTAAAGTATTCAAGACGATCCATTTCTTCAAGTAATTTTCCAAACATTCCATGCACAATAAAT
1 -CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTAACATTCCATGCACAAGAAAT
* **
341490 CACATCATTTGGTCTATATAGTTTGTCATTTTGTAAAAAAAAATTTGTCTTTGAATTAAAAACTT
65 CACATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAAAAATTTTTGTCTTTGAATTAAAAACTT
* * *
341555 ATTTACGTGAGAATTGTTTCTCTATTGG-TTCTGAGATGAACTTCCGAACTTGTCAAACTTTTAC
129 ATTTA--T-AGAATT-TATCTC--TTGGTTTTTGA-ATGAACTTTCGAACTTGTCAAACTTTTAC
341619 GAG-TTCTATTATAACTTCGATT
187 GAGTTTC-ATTATAACTTCGATT
* * * * *
341641 GCTTAAAATATTGAAGACGATCCATTCCTTCTAGCAA-TTTTCTGAGCATTCCATGCTCGAA-AA
1 -CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCT-AACATTCCATGCAC-AAGAA
* * * * * * * *
341704 ATCGCATCATTTGGTCTAAGTAGTTTTTCATTTTGTTATAAACTTTTGTCTTAGAATTGAAAACT
63 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAATTTTTGTCTTTGAATTAAAAACT
* *
341769 TA-TT-T-G-ATTTATCTCTTGGTTTTTGAATGAACTTTTGAACTTGTCAAACTTTTACGGGTTT
128 TATTTATAGAATTTATCTCTTGGTTTTTGAATGAACTTTCGAACTTGTCAAACTTTTACGAGTTT
*
341830 CGTTATAACTTCGATT
193 CATTATAACTTCGATT
* * * *
341846 CATTAATGTATTCAAGACGACCCATTTCTTCGAGCAATTTTTCTAACTTTCCATGCACAAGAAAT
1 C-TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTAACATTCCATGCACAAGAAAT
* *
341911 CACATC-TTTGGTCTAAATAGCTTGTCATTTTGTAAACAAATTTTTGTATTTGAATTAAAAACTT
65 CACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAATTTTTGTCTTTGAATTAAAAACTT
* * * ** * *
341975 ATTTATGTGATAATTGTTTCTCTATTGG-TTCTGAGACAAACTTTCGAACTTGTTAAACCTTTAC
129 ATTTA--T-AGAATT-TATCTC--TTGGTTTTTGA-ATGAACTTTCGAACTTGTCAAACTTTTAC
* * * *
342039 AAG-TTCTTTTATAACTTTGGTT
187 GAGTTTC-ATTATAACTTCGATT
* * * ** **
342061 CCTTAAAGAATTCAAGATGATCCATTCCTTCGAGCAATTTTT-TGAACAATCCATGTTCGGGAAA
1 -CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCT-AACATTCCATGCACAAGAAA
* ** * * * * * ** * *
342125 TCGCATTGTTTTGTCTACATACTTTTTCATTTTGTTATCAACTTTTGAT-ATTGAATTAAAAACT
64 TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAATTTTTG-TCTTTGAATTAAAAACT
* * * ** *
342189 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTTGAACTTGTCAAACTTTTAC
128 TATTTA--T-AGAA---TTTATCTCTTGGTTTTTGAATGAACTTTCGAACTTGTCAAACTTTTAC
* *
342254 GA-CTTCTTTTATAACTTCGATT
187 GAGTTTC-ATTATAACTTCGATT
* * * * * *
342276 CCTTAAAGAATTCAAGACTATCCATTCCTTTGAGCAATTTTTCAAACATTCCATGCTC-GGAAAA
1 -CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTAACATTCCATGCACAAG-AAA
* * * ** * *
342340 TCGCAT-AGTTTAGTCTAAAAAGTTTGTCATTTTGTTATCAACTTTTGGTCTTT-AATTTAAAAA
64 TCACATCA-TTTGGTCTAAATAGTTTGTCATTTTG-TAAAAAATTTTTGTCTTTGAA-TTAAAAA
* * ** * * *
342403 CTTATTTACATGAGAATTATTTCTCTCAAGGTTCATGGACGAAC-ATCGAACTTGTCAAACTTTT
126 CTTATTT--AT-AGAATT-TATCTCT--TGGTTTTTGAATGAACTTTCGAACTTGTCAAACTTTT
* * *
342467 ACGAG-TTCTTTTATAACTTTGGTT
185 ACGAGTTTC-ATTATAACTTCGATT
* * *
342491 CCATAAATTATTCAAGACGATCCATTCCTTCAAGCAA--TTT-T--C--TCC--G-----GAAAT
1 -CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTAACATTCCATGCACAAGAAAT
** * * * * * * * *
342542 TGCATCATTTTGT-TAGATAGTTTGTCATATTCTAAACAAGTTTTGGTCTTTGAACTAGAAA-TG
65 CACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAATTTTTGTCTTTGAATTAAAAACT-
* * * * * **
342605 TATTTACGTGAGAATTGTTTCTATTGGTTCTTGGACGAA-TTGAAGAACTTGTCAAACTTTTAC-
128 TATTTA--T-AGAATT-TATCTCTTGGTTTTTGAATGAACTT-TCGAACTTGTCAAACTTTTACG
* * * * *
342668 ATGATCCTTTATTACTTCGGTT
188 A-GTTTCATTATAACTTCGATT
* * * * * * * **
342690 CTATAAAAGTATTCAAGATGATCCATTCCTTTGAACAAATTTTCAAACATTTCATGCTCGGGAAA
1 CT-T-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTAACATTCCATGCACAAGAAA
* * * * * *
342755 TTGA-ATCATTTTGTCTAAAAATTTTGTCATTCTGT-AAACATGTTTTGGTCTTTGAATTAAAAA
64 -TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAT-TTTT-GTCTTTGAATTAAAAA
* * * * * * * **
342818 CTAATTTAT-GTGA-TTCTCTCCTGGTTCTGGGACAAACTTTCGAACTTGTCAAACTTTTAC---
126 CTTATTTATAG-AATTTATCTCTTGGTTTTTGAATGAACTTTCGAACTTGTCAAACTTTTACGAG
**
342878 -TT--TGGT-A---C----
190 TTTCATTATAACTTCGATT
* * * * * **
342886 CTTAAAGTAGTCAAGACGATCAATTCCTTCGAGGAA-TTTTCTGAACATTCCATTCTCGTGAAAT
1 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCT-AACATTCCATGCACAAGAAAT
* * * *
342950 CACATCATTTGGTCTAAATAGTTCGCCATTTTATAAAAAAGTTTGTGTCTTTGAATTAAAAACTT
65 CACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAA-TTTTTGTCTTTGAATTAAAAACTT
* * * *
343015 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTCAAACTTTTAC
129 ATTTA--T-AG-A--ATTTATCTCTTGGTTTTTGAATGAACTTTC-GAACTTGTCAAACTTTTAC
* * *
343079 GAGTTCCTTTATAACTT-AAGTT
187 GAGTTTCATTATAACTTCGA-TT
* * * * * * * ** *
343101 CCTTAAAGTATTTAATATGATACATTCCTTCGAGCAATTTTTCAAACATTCAATGCTCGGGTAAT
1 -CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTAACATTCCATGCACAAG-AAA
* ** * * *
343166 TGA-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAGGTTTTGGTCTTTAAATTAAACACT
64 TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAATTTTTGTCTTTGAATTAAAAACT
* * * * * * * * * *
343230 T-TTTACGTGAGAATTGTTTCTCTACTGGTTCTGGGACGAAGTTCCAAACTTATAAAACTTTTAC
128 TATTTA--T-AGAATT-TATCTCT--TGGTTTTTGAATGAACTTTCGAACTTGTCAAACTTTTAC
* * *
343294 CAG-TTCTTTTACAACTTCTG-TT
187 GAGTTTC-ATTATAACTTC-GATT
* * * *
343316 CGTTAAAGTATTCAAGATGATGCATTCCTTCAAGCAA--TTT-T--C--T-C--G----GGAAAT
1 C-TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTAACATTCCATGCACAAGAAAT
* * * * * *
343367 CGCTTCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAAGTTTTGGTCTTTAAATTAAAAA-TG
65 CACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAATTTTTGTCTTTGAATTAAAAACT-
* * * * * ** *
343431 AATTTACGTGAGAATTGTTTCTCTTGGGTTCTTGGACGAACTTAAGAACTTGTCAAACTTTCACG
128 TATTTA--T-AGAATT-TATCTCTT-GGTTTTTGAATGAACTTTCGAACTTGTCAAACTTTTACG
* * * * *
343496 AG-ATCTTTATTACTTTGGTT
188 AGTTTCATTATAACTTCGATT
* * * * **
343516 CCTTAAAAGTATTCAAGACGATCCATTCCTTCGA-AAATTTCTT-GAACACTCCATGCTCGGGAA
1 -CTT-AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-TTCTAACATTCCATGCACAAGAA
* * * *
343579 ATTGA-ATCATTTTGTCTAAATAGTTTGTCATTTTGT-AAAGATGTTTTACTCTTTGAATTAAAA
63 A-TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAT-TTTT-GTCTTTGAATTAAAA
* * * * * *
343642 ACTCATTTATGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACTTTCGAACTTGTCAAACTTT
125 ACTTATTTA--T-AGAA---TTTATCTCTTGGTTTTTGAATGAACTTTCGAACTTGTCAAACTTT
343707 TAC
184 TAC
343710 TTTGGTTTTT
Statistics
Matches: 1821, Mismatches: 316, Indels: 295
0.75 0.13 0.12
Matches are distributed among these distances:
193 7 0.00
194 91 0.05
195 8 0.00
196 4 0.00
198 17 0.01
199 38 0.02
200 106 0.06
201 173 0.10
202 28 0.02
203 3 0.00
204 30 0.02
205 124 0.07
206 18 0.01
207 10 0.01
208 9 0.00
209 3 0.00
210 39 0.02
211 5 0.00
212 9 0.00
213 30 0.02
214 106 0.06
215 520 0.29
216 415 0.23
217 25 0.01
218 3 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (208 bp):
CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCTAACATTCCATGCACAAGAAATC
ACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAATTTTTGTCTTTGAATTAAAAACTTAT
TTATAGAATTTATCTCTTGGTTTTTGAATGAACTTTCGAACTTGTCAAACTTTTACGAGTTTCAT
TATAACTTCGATT
Found at i:344150 original size:215 final size:216
Alignment explanation
Indices: 343775--344175 Score: 560
Period size: 215 Copynumber: 1.9 Consensus size: 216
343765 AAATCACATC
* *
343775 ATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTGTTTCTTTGAATTAAAAACTTATTTAC
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTGTGTCTTTAAATTAAAAACTTATTTAC
* * * *
343840 GTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTGGTCAAACTTTTATGAGTTCC
66 GTGAGAATTATTTCTCTATAGGTTCTGGGACGAACTTCCAAACTGATCAAACTTTTATGAGTTCC
343905 TTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCATTCGAGCAATTTTTTGAACATT
131 TTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCATTCGAGCAATTTTTTGAACATT
343970 CCATGCTTGGGTAATCGAATT
196 CCATGCTTGGGTAATCGAATT
* * *
343991 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAGGTTT-TGGTCTTTAAATTAAACACTT-TTTA
1 ATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTGT-GTCTTTAAATTAAAAACTTATTTA
* * * * * *
344054 CGTGAGAATTGA-TTCTCTATAGGTTGTGGGATGATCTTCCGAACTTATTAAACTTTTACT-AGT
65 CGTGAGAATT-ATTTCTCTATAGGTTCTGGGACGAACTTCCAAACTGATCAAACTTTTA-TGAGT
* * * *
344117 TCTTTTATAACTTAT-GTTCCTTAAAGTATTCAAGATGATGCATTCCTTCGAGTAATTTT
128 TCCTTTATAACTT-TGGTTCCTTAAAGTATTCAAGATGATCCATTCATTCGAGCAATTTT
344176 CTCGTGAAAT
Statistics
Matches: 162, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
215 107 0.66
216 55 0.34
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.43
Consensus pattern (216 bp):
ATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTGTGTCTTTAAATTAAAAACTTATTTAC
GTGAGAATTATTTCTCTATAGGTTCTGGGACGAACTTCCAAACTGATCAAACTTTTATGAGTTCC
TTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCATTCGAGCAATTTTTTGAACATT
CCATGCTTGGGTAATCGAATT
Found at i:344615 original size:48 final size:48
Alignment explanation
Indices: 344537--344667 Score: 183
Period size: 48 Copynumber: 2.8 Consensus size: 48
344527 TATTTATGCT
* *
344537 TCATTAAGTGTTTT-TGTGCTATATGCATCTTTGTTTAATAATCTGCA
1 TCATTAAGTGTTTTGTTTGCTAAATGCATCTTTGTTTAATAATCTGCA
*
344584 TCATTAAGTGTTTTGTTTGCTAAATGCATCTTTGTTTAGTAATCTGCA
1 TCATTAAGTGTTTTGTTTGCTAAATGCATCTTTGTTTAATAATCTGCA
* * * * *
344632 TTATTAACTATTTTGTTTGTTAAATGCATATTTGTT
1 TCATTAAGTGTTTTGTTTGCTAAATGCATCTTTGTT
344668 AAATGCCTTG
Statistics
Matches: 75, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 14 0.19
48 61 0.81
ACGTcount: A:0.24, C:0.11, G:0.15, T:0.51
Consensus pattern (48 bp):
TCATTAAGTGTTTTGTTTGCTAAATGCATCTTTGTTTAATAATCTGCA
Found at i:345200 original size:80 final size:79
Alignment explanation
Indices: 345116--345268 Score: 234
Period size: 80 Copynumber: 1.9 Consensus size: 79
345106 AAATGCCATG
* * *
345116 CCTTTTCAGCTACATCAAATCCTAATGAAGAGACATGACTCATTGGCTTTCCTACAAGAGTTAAA
1 CCTTTTCAACTACATCAAATCCTAATGAAGAGACATGACTCATTAGCTTCCCTACAAGAGTT-AA
345181 AATGAAATTGCCACT
65 AATGAAATTGCCACT
* * * *
345196 CCTTTTTAACTACATCAAATCCTAATGAAGAGGCATGATTCATTAGCTTCCCTACAAGGGTTAAA
1 CCTTTTCAACTACATCAAATCCTAATGAAGAGACATGACTCATTAGCTTCCCTACAAGAGTTAAA
345261 ATGAAATT
66 ATGAAATT
345269 AGTGCTTGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
79 11 0.17
80 55 0.83
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (79 bp):
CCTTTTCAACTACATCAAATCCTAATGAAGAGACATGACTCATTAGCTTCCCTACAAGAGTTAAA
ATGAAATTGCCACT
Found at i:346461 original size:215 final size:215
Alignment explanation
Indices: 345723--350276 Score: 3990
Period size: 215 Copynumber: 21.6 Consensus size: 215
345713 GCTCATATCA
* * **
345723 GTCTTTGAATTAAAAA-TGTATTTATGTGAGAATTGTTTCTCT-TGGGTTCTTGGACGAACTTAA
1 GTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCC
* * *
345786 GAACTTGTCAAACTTTCACGAGATCCTTTATTACTTTGGTTCCTTAAAAGTATTCAAGACGATCC
64 GAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTT-AAAGTATTCAAGACGATCC
* * * ** * * * *
345851 ATTCCTTC-A-AAATTTTTTTCAAACACTCCATGCTTGGGAAATTGAATCATTTTGTCTCAATAG
128 ATTCCTTCGAGCAA--TTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAG
* * * * *
345914 TTTATCATTTTGTAAAGATGTCTTA
191 TTTGTCATTTTGTAAACAAGTTTTG
* * *
345939 CTCTTTGAATTAAAAACTCATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGTGACGAACTTTCC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTG-GACGAAC-TTCC
* * * *
346004 -AACTTGT--GA-----A--A----CTTT-T-ACTTTGGTACCTTAAACTATTCAAGACGATCAA
64 GAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* *
346053 TTCCTTCGAGCAATTTTTCGAACATTCCATTCTCATGAAATCGCATCATTTGGTCTAAATAGTTT
129 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
*
346118 GTCATTTTGTAAAAAAG-TTT-
194 GTCATTTTGTAAACAAGTTTTG
* * * *
346138 GTCTTTGAATTAAAAACTTATTTACGTGAGAACTGTTTCACCCTTGGTTTTTAGACGAACTTCCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TTTTGGACGAACTTCCG
* * ** *
346203 AACTTGTCAAACCTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGAATTCAAGACGATCCAT
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * *
346268 TCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT-AGTTTTGTCTAAACAGTTT
130 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCA-TTTGGTCTAAATAGTTT
* * * *
346332 GTCATTTTATTATCAACTTTTG
194 GTCATTTTGTAAACAAGTTTTG
* * * *
346354 ATC-TTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTATTGGTTTTGAGACGAACTTTCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTG-GACGAACTTCCG
** * *
346418 AACTTGTCAAACTTTTACGAGTTTTTTTATAACTTTGGTTCCTTAAAATATTGAAGACGATCCAT
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* ** * *
346483 TCCTTTGAGCAATTTTTCGAACATTCCATGCTCAAAAAATCGTATCATTTGGTCTAAATAGTTTT
130 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * *
346548 TCATTTTGTTATCAA-CTTTG
195 TCATTTTGTAAACAAGTTTTG
* **
346568 GTCTTTGAA-T---AACTTATCTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCCG
* * * * * * *
346629 AATTTGGCAAACTTTTATGAGTTCCGTTATAACTTTGGTTCCTTAATGAATTCAAGATGATCCAT
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * * * *
346694 TCCTTTGAGCAATTTTTCAAACATTTCATGCACAAGAAATAGCATTATTTGGTTTAAATAGTTTG
130 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
*
346759 TCATTTTCTAAACAAGTTTTG
195 TCATTTTGTAAACAAGTTTTG
** * *
346780 GTCTTTGAATTAAAAAAGTATTTACGTGAGAATTGTTTCTCT-TGGGTTCTTGGACGAACTTCCA
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCCG
* * * *
346844 AACTTTTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTGAAGTATTCAATACGATTCAT
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * * *
346909 TCCTTGGAGCAATTTTTCTAACATTCTATGCTCGGGTAATCGAATCATTTGGTCCAAATAGTTTG
130 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
* *
346974 TCATTTTGTAAATAGGTTTTG
195 TCATTTTGTAAACAAGTTTTG
* * *
346995 GTCTTTAAATTAAAAACTT-TTTACGTGAGAATTGTTTCTC-CATCGGTTCTGGGACGAACTTCC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTT-TTGGACGAACTTCC
* * * * * *
347058 TAACATGTCAAACTTTTACTAGTT-CTTTAATAATTTTGGTTCCTTGAAGTATTCAAGACGATGC
64 GAACTTGTCAAACTTTTACGAGTTCCTTT-ATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
* * * *
347122 ATTCCTTCGTGCAA-TTTT----C--T-C--G----GGAAATTGCTTCATTTGGTCAAAATAGTT
128 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTT
* *
347173 TGTCATTTTCTAAACAA--CTTG
193 TGTCATTTTGTAAACAAGTTTTG
* * * * * **
347194 GTCTTTAAATTAAAAACGTATTTACGTTAGAATTGTTTCACT-TGGGTTCTTGGACGAACTTAAG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCCG
* * * * * * *
347258 AAATTATCAAACTTTCACGAGATCCTTTATTACTTTGGTTCCTTAAAGCATTCAAGATGATCCAT
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* ** ** * * *** *
347323 TCCTTTGAAAAAAATTTCGAACATTCCATGTTCGGGAAATTTAATCATTTTGTCTAAATAGTTTG
130 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * *
347388 TCATTTTGTAAAGATGTTTTA
195 TCATTTTGTAAACAAGTTTTG
* * * * *
347409 CTCTTTGAATTAAAAACTCATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACAAACTTTCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCCG
* *
347474 AACTTGTCAAACTTTTAC---TT--TGT-T-A--------CCTTAAAGTATTCAAGACGATGCAT
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * *
347524 TCCTTCGAGCAATTTTTTGAACATTCCACGCTCAGGAAATCGTAACATTTGGTCTAAATAGTTTG
130 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
*
347589 TCATTTTGTAAAAAAG-TTTG
195 TCATTTTGTAAACAAGTTTTG
* * *
347609 TGTCTTTGAATTAAAAACTTATTTGCATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT
1 -GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCC
* * *
347674 GAACTTGTCAAACTTTTACGAGTTCCGTTATAACTTCGGTTCCTTAATGTATTCAAGACGATCCA
64 GAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * *
347739 TTCCTTCGAGTAATTTTTCGAACATTCCATGCGCAAGAAATCGCATCATTTGGTCTAAATAGTTT
129 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * *
347804 GCCACTTTGTAAATAAATTTTT
194 GTCATTTTGTAAACAAGTTTTG
* * * **
347826 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTTTATTGGTTCTGAGACGAACTTTTG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTG-GACGAACTTCCG
* * * * *
347891 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTGCTTAAAATATTGAAGACGATCCAT
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* *
347956 TCCTTCGAGCAA-TTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
130 TCCTTCGAGCAATTTTTC-GAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
348020 TTCATTTTGTTATCAACTTTT-
194 GTCATTTTGTAAACAAGTTTTG
* * * * * *
348041 GTCTTAGAATTGAAAACTTGTTTGCGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTCCCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCCG
* * * ** * * *
348106 AACTTGTCAAACTTTTACGAGTTCCATTATAACGTCGGTTAATTAATGTAATCAAGACAATCCAT
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * *
348171 TCCTTCGAGCAATTTTCCAAACATTCCATGCACAAGAAATCGCATCATTTGGTCTAAATAGTTTG
130 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
* *
348236 TCATTTTGTAAACAAATTTTT
195 TCATTTTGTAAACAAGTTTTG
* * ** * * ** ** *
348257 ATATTTGAATTAAAAACTTATTTATTTGTGAATTGTTTCTTTAATGGTTCTAAGACAAACTTCCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCCG
* * *** * *
348322 AACTTGTCAAACTTTTACGAATTCTTTTATAACTTCAATTCCTCAAAGAATTCAAGACGATCCAT
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * *
348387 TCCTTCGAGCAATTTTTTGAACATTCCATGCTCGGGATATCGCAT-AGTTTTGTCTAAATAGTTT
130 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCA-TTTGGTCTAAATAGTTT
* * *
348451 GTCATTTTGTTATCAACTTTCT-
194 GTCATTTTGTAAACAAGTTT-TG
* * * * * *
348473 ATC-TTGAATTAAAAACTTATTTACTTGATAATTGTTACTCTCTTGGTTCTTGGACTAACTTTCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCCG
* *** * ** *
348537 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAATTCCTTAAAGAATTCTGGATGATCCAT
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * **
348602 TAC-TCTGAGCAATTTTTCAAACTTTCCATGCTCAAGTAATCAAATCA--T--TCTAAATAGTTT
130 TCCTTC-GAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* *
348662 GTCGTTTTGTAAACAGGTTTTG
194 GTCATTTTGTAAACAAGTTTTG
* * * * * ** * *
348684 GTATTTAAATT--AAACATATTTTACCTGAGAATTGTTTCTCTATTGGTTCAGGGATGAAGTTCC
1 GTCTTTGAATTAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCC
* * * *
348747 GAACTTATCAAACTTTTACTAGTTCTTTTATAACTTCT-GTTCCTTAAAGTATTCAAGACGATGC
64 GAACTTGTCAAACTTTTACGAGTTCCTTTATAACTT-TGGTTCCTTAAAGTATTCAAGACGATCC
* * * *
348811 ATTCCTTCAAGCAA-TTTT----C--T-C--G---A--AAATCACTTCATTTGGTCTAAGTAGTT
128 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTT
*
348861 TGTCATTTTCTAAACAAGTTTTG
193 TGTCATTTTGTAAACAAGTTTTG
* * * **
348884 GTCTTTGAATTAAGAACGTATTTACGTGAGAATTGTTTCTCT-TTGGTTCTTGGATGAACTTAAG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCCG
* * *
348948 AACTTGTCAAACTTTCACGAGATCCTTTATTACTTTGGTTCCTTAAAAGTATTCAAGACGATCCA
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTT-AAAGTATTCAAGACGATCCA
* ** *** * * * * * *
349013 TTCCTTCAAAAAAAAAAATT-GAACACTCAAAGCTCGGGAAATTGAATCATTAT-GTCTAAATAG
129 TTCCTTC--GAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATT-TGGTCTAAATAG
* * *
349076 TTTGTCATTTTTTAAAGATA-TTTTA
191 TTTGTCATTTTGTAAACA-AGTTTTG
* * * * * * *
349101 CTCTTTGAAGTAAAAACTCATTTACGTGAGAATTGTTTCTCTCTTAGTTCTGGGACAAACTTTCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCCG
* *
349166 AACTTGTCAAACTTTTAC---TT--TGT-T-A--------CCTTAAAGTATTCAAGATGATCCAT
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* ** * * *
349216 TCCTTCGAGCAATTTTTCGAACATTCTACACTCAGGAAATCACATCATTTGGTCAAAATAGATTG
130 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
* **
349281 TCATTTTGTAAAAAAG-CGT-
195 TCATTTTGTAAACAAGTTTTG
* * * * ** *
349300 GTCATTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTATTAGTTCTAAGACAAACTTCCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCCG
* ** * * * * **
349365 AACTTATCAAACTTTTTTGAGTTCTTTTGTAACTTTGGTTCCTTAAAATATTGAAGATAATCCAT
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * * ** *
349430 TCCTTTGAGTAATTTTTTGAAAATTCCATGCTTAGGAAATCGCATCATTTCATCTAAATAGTTTT
130 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * *
349495 TCGTTTTGTTATCAACTTTTG
195 TCATTTTGTAAACAAGTTTTG
* * * * *
349516 GTCTTTGAATTAAAAACTTATTTGCGTGAGAATTGTTTCTCTCGTGGTTCTTGGATGAACCTCCA
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCCG
* * * * * *
349581 AACTTGTCAAACTTTTACAAGTTCCATTATCAGTTTGGTTCCTTAATGTATATTCAAGATGATCC
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAG--TATTCAAGACGATCC
* * * * * *
349646 ATTCCTTTGAGCAATTTTCCAAATATTCCATGCACAAGAAATCG---CA-----TC-----A--T
128 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTT
* *
349696 TGTCATTTTGTAAACAAATTTTT
193 TGTCATTTTGTAAACAAGTTTTG
* * ** * *
349719 GTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTATTGGTACTGAGATGAACTTCTG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTG-GACGAACTTCCG
* *** * * * *
349784 AACTTGTCAAACTAGTTT-----TTCATTTATAACTCCAGTTCCATAAAATATTTAAGACAATCC
65 AACTTGTCAAACT--TTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
* *
349844 ATTCCTTCGAGCAAGTTTTT-GAACATTCCATGCTCGGGAAATCACATCATTTGGT-TCAAATAG
128 ATTCCTTCGAGCAA-TTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCT-AAATAG
* * *
349907 TTT-TCATTTTGTTATCAACTTTTG
191 TTTGTCATTTTGTAAACAAGTTTTG
* * * * *
349931 GACTTTGAATTAAAAGCTTATTTGCGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACGAACTTCCG
* ** * *
349996 AACTTGTCAAACTTTTACGAGTT-TTGTTATAACTTCAGTTCCTTAATGTTTTCAAGACGATCCA
65 AACTTGTCAAACTTTTACGAGTTCCT-TTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
350060 TTCCTTCAAGTAATTTTTTGAACATTCCATGCACAAGAAA-CTGTATCATTTGGTCTAAATAGTT
129 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATC-GCATCATTTGGTCTAAATAGTT
* *
350124 TGTCATTTTGTAAACAAATTTTT
193 TGTCATTTTGTAAACAAGTTTTG
* * * * * * * **
350147 GTCTTTGAATTAAAAACTTATTTAAGTGGGAATTATTCCTCTTTTGGTTCTGAGACAAACTTATG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTG-GACGAACTTCCG
* * *
350212 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAGAA-TATTGAAGACGATCCA
65 AACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTA-AAGTATTCAAGACGATCCA
350276 T
129 T
350277 GATGCGAGCA
Statistics
Matches: 3530, Mismatches: 636, Indels: 344
0.78 0.14 0.08
Matches are distributed among these distances:
196 8 0.00
198 49 0.01
199 226 0.06
200 151 0.04
201 379 0.11
202 48 0.01
203 96 0.03
204 12 0.00
205 6 0.00
206 6 0.00
207 3 0.00
208 4 0.00
209 3 0.00
210 19 0.01
211 294 0.08
212 114 0.03
213 49 0.01
214 229 0.06
215 878 0.25
216 768 0.22
217 102 0.03
218 86 0.02
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTGGACGAACTTCCGA
ACTTGTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATT
CCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGT
CATTTTGTAAACAAGTTTTG
Found at i:347885 original size:216 final size:215
Alignment explanation
Indices: 347144--350276 Score: 2728
Period size: 216 Copynumber: 14.8 Consensus size: 215
347134 AATTTTCTCG
* * * * * * *
347144 GGAAATTGCTTCATTTGGTCAAAATAGTTTGTCATTTTCTAAAC-AA-CTTGGTCTTTAAATTAA
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAA
* * * * ** * *
347207 AAACGTATTTACGTTAGAATTGTTTCACT-TGGGTTCTTGGACGAACTTAAGAAATTATCAAACT
66 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCTGAACTTGTCAAACT
* * * * * * * * ** *
347271 TTCACGAGATCCTTTATTACTTTGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTTGAAAAAA
130 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * *
347336 ATTTCGAACATTCCATGTTCG
195 TTTTCGAACATTCCATGCTCA
*** * * ** **
347357 GGAAATTTAATCATTTTGTCTAAATAGTTTGTCATTTTGTAAAGATGTTTTACTCTTTGAATTAA
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAA
* *
347422 AAACTCATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACAAACTT-TCGAACTTGTCAAAC
66 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-GGACGAACTTCT-GAACTTGTCAAAC
* *
347486 TTTTAC----T-TTGT-T-A--------CCTTAAAGTATTCAAGACGATGCATTCCTTCGAGCAA
129 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* *
347536 TTTTTTGAACATTCCACGCTCA
194 TTTTTCGAACATTCCATGCTCA
* * *
347558 GGAAATCGTAACATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAAGTTTGTGTCTTTGAATTA
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAA-TTTTTGTCTTTGAATTA
* *
347622 AAAACTTATTTGCATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAC
65 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCTGAACTTGTCAAAC
** * *
347687 TTTTACGAGTTCCGTTATAACTTCGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGTAA
129 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
*
347752 TTTTTCGAACATTCCATGCGCA
194 TTTTTCGAACATTCCATGCTCA
* * * *
347774 AGAAATCGCATCATTTGGTCTAAATAGTTTGCCACTTTGTAAATAAATTTTTGTCTTTGAATTAA
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAA
* * *
347839 AAACTTATTTACGTGAGAATTGTTTCTTTATTGGTTCTGAGACGAACTTTTGAACTTGTCAAACT
66 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTG-GACGAACTTCTGAACTTGTCAAACT
* * *
347904 TTTACGAGTTCTTTTATAACTTCGGTTGCTTAAAATATTGAAGACGATCCATTCCTTCGAGCAA-
130 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* *
347968 TTTTCTAAACATTCCATGCTCG
195 TTTTC-GAACATTCCATGCTCA
* * * * * *
347990 GGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTTATC-AACTTTTGTCTTAGAATTGA
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAA
* * * * *
348054 AAACTTGTTTGCGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTCCCGAACTTGTCAAACT
66 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCTGAACTTGTCAAACT
** * ** * * *
348119 TTTACGAGTTCCATTATAACGTCGGTTAATTAATGTAATCAAGACAATCCATTCCTTCGAGCAAT
130 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * *
348184 TTTCCAAACATTCCATGCACA
195 TTTTCGAACATTCCATGCTCA
* * *
348205 AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTATATTTGAATTAA
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAA
** * * ** * * *
348270 AAACTTATTTATTTGTGAATTGTTTCTTTAATGGTTCTAAGACAAACTTCCGAACTTGTCAAACT
66 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-GGACGAACTTCTGAACTTGTCAAACT
* ** * *
348335 TTTACGAATTCTTTTATAACTTCAATTCCTCAAAGAATTCAAGACGATCCATTCCTTCGAGCAAT
130 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* *
348400 TTTTTGAACATTCCATGCTCG
195 TTTTCGAACATTCCATGCTCA
* * * * * * *
348421 GGATATCGCAT-AGTTTTGTCTAAATAGTTTGTCATTTTGTTATCAACTTTCTATC-TTGAATTA
1 GGAAATCGCATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTA
* * * *
348484 AAAACTTATTTACTTGATAATTGTTACTCTCTTGGTTCTTGGACTAACTT-TCGAACTTGTCAAA
65 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCT-GAACTTGTCAAA
** * ** * *
348548 CTTTTACGAGTTCTTTTATAACTTCAATTCCTTAAAGAATTCTGGATGATCCATTAC-TCTGAGC
128 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-GAGC
* *
348612 AATTTTTCAAACTTTCCATGCTCA
192 AATTTTTCGAACATTCCATGCTCA
* * ** * ** * * *
348636 AGTAATCAAATCA--T--TCTAAATAGTTTGTCGTTTTGTAAACAGGTTTTGGTATTTAAATT--
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAA
* * * * * * * *
348695 AAACATATTTTACCTGAGAATTGTTTCTCTATTGGTTCAGGGATGAAGTTCCGAACTTATCAAAC
66 AAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCTGAACTTGTCAAAC
* * * *
348760 TTTTACTAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATGCATTCCTTCAAGCAA
129 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
348825 -TTTT----C--T-C--G---A
194 TTTTTCGAACATTCCATGCTCA
* * * * * *
348834 --AAATCACTTCATTTGGTCTAAGTAGTTTGTCATTTTCTAAACAAGTTTTGGTCTTTGAATTAA
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAA
* * * **
348897 GAACGTATTTACGTGAGAATTGTTTCTCT-TTGGTTCTTGGATGAACTTAAGAACTTGTCAAACT
66 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCTGAACTTGTCAAACT
* * * * * * **
348961 TTCACGAGATCCTTTATTACTTTGGTTCCTTAAAAGTATTCAAGACGATCCATTCCTTCAAAAAA
130 TTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTC--GAGC
*** * * * *
349026 AAAAATT-GAACACTCAAAGCTCG
192 AATTTTTCGAACATTCCATGCTCA
* * * * * ** *
349049 GGAAATTGAATCATTAT-GTCTAAATAGTTTGTCATTTTTTAAAGATATTTTACTCTTTGAAGTA
1 GGAAATCGCATCATT-TGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTA
* * *
349113 AAAACTCATTTACGTGAGAATTGTTTCTCTCTTAGTTCTGGGACAAACTT-TCGAACTTGTCAAA
65 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-GGACGAACTTCT-GAACTTGTCAAA
* *
349177 CTTTTAC----T-TTGT-T-A--------CCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCA
128 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* **
349227 ATTTTTCGAACATTCTACACTCA
193 ATTTTTCGAACATTCCATGCTCA
* * * *** *
349250 GGAAATCACATCATTTGGTCAAAATAGATTGTCATTTTGTAAA-AAA-GCGTGTCATTGAATTAA
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAA
* * * * * * *
349313 AAACTTATTTACTTGAGAATTGTTTCTCTATTAGTTCTAAGACAAACTTCCGAACTTATCAAACT
66 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-GGACGAACTTCTGAACTTGTCAAACT
** * * * * ** * *
349378 TTTTTGAGTTCTTTTGTAACTTTGGTTCCTTAAAATATTGAAGATAATCCATTCCTTTGAGTAAT
130 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * *
349443 TTTTTGAAAATTCCATGCTTA
195 TTTTCGAACATTCCATGCTCA
** * * * * * *
349464 GGAAATCGCATCATTTCATCTAAATAGTTTTTCGTTTTGTTATCAACTTTTGGTCTTTGAATTAA
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAA
* * * * **
349529 AAACTTATTTGCGTGAGAATTGTTTCTCTCGTGGTTCTTGGATGAACCTCCAAACTTGTCAAACT
66 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCTGAACTTGTCAAACT
* ** * * * * * *
349594 TTTACAAGTTCCATTATCAGTTTGGTTCCTTAATGTATATTCAAGATGATCCATTCCTTTGAGCA
130 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG--TATTCAAGACGATCCATTCCTTCGAGCA
* * * *
349659 ATTTTCCAAATATTCCATGCACA
193 ATTTTTCGAACATTCCATGCTCA
*
349682 AGAAATCG---CA-----TC-----A--TTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAA
1 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAA
* * * *
349732 AAACTTATTTACGTAAGAATTGTTTCTCTATTGGTACTGAGATGAACTTCTGAACTTGTCAAACT
66 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTG-GACGAACTTCTGAACTTGTCAAACT
* * * * * * *
349797 AGTTT-----TTCATTTATAACTCCAGTTCCATAAAATATTTAAGACAATCCATTCCTTCGAGCA
130 --TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
*
349857 AGTTTTT-GAACATTCCATGCTCG
193 A-TTTTTCGAACATTCCATGCTCA
* * * * * *
349880 GGAAATCACATCATTTGGT-TCAAATAGTTT-TCATTTTGTTATCAACTTTTGGACTTTGAATTA
1 GGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTA
* * *
349943 AAAGCTTATTTGCGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTGTCAAAC
65 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCTGAACTTGTCAAAC
* * * * *
350008 TTTTACGAGTT-TTGTTATAACTTCAGTTCCTTAATGTTTTCAAGACGATCCATTCCTTCAAGTA
129 TTTTACGAGTTCTT-TTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* *
350072 ATTTTTTGAACATTCCATGCACA
193 ATTTTTCGAACATTCCATGCTCA
* *
350095 AGAAA-CTGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTA
1 GGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTA
* * * * * * *
350159 AAAACTTATTTAAGTGGGAATTATTCCTCTTTTGGTTCTGAGACAAACTTATGAACTTGTCAAAC
65 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTG-GACGAACTTCTGAACTTGTCAAAC
*
350224 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAGAA-TATTGAAGACGATCCAT
129 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AAGTATTCAAGACGATCCAT
350277 GATGCGAGCA
Statistics
Matches: 2355, Mismatches: 442, Indels: 243
0.77 0.15 0.08
Matches are distributed among these distances:
196 8 0.00
198 45 0.02
199 74 0.03
200 118 0.05
201 258 0.11
202 35 0.01
203 95 0.04
204 6 0.00
205 6 0.00
206 4 0.00
207 2 0.00
208 1 0.00
209 2 0.00
210 16 0.01
211 129 0.05
212 97 0.04
213 44 0.02
214 92 0.04
215 454 0.19
216 704 0.30
217 83 0.04
218 82 0.03
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAA
AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGACGAACTTCTGAACTTGTCAAACTT
TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
TTTCGAACATTCCATGCTCA
Found at i:348196 original size:431 final size:429
Alignment explanation
Indices: 345723--350276 Score: 4033
Period size: 431 Copynumber: 10.8 Consensus size: 429
345713 GCTCATATCA
* * **
345723 GTCTTTGAATTAAAAA-TGTATTTATGTGAGAATTGTTTCTCT-TGGGTTCTTGGACGAACTTAA
1 GTCTTTGAATTAAAAACT-TATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCC
* * * * *
345786 GAACTTGTCAAACTTTCACGAGATCCTTTATTACTTTGGTTCCTTAAAAGTATTCAAGACGATCC
64 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAA-TATTCAAGACGATCC
* * * ** * * * *
345851 ATTCCTTC-A-AAATTTTTTTCAAACACTCCATGCTTGGGAAATTGAATCATTTTGTCTCAATAG
128 ATTCCTTCGAGCAA--TTTTT-GAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAG
* * ** ** *
345914 TTTATCATTTTGTAAAGATGTCTTACTCTTTGAATTAAAAACTCATTTACGTGAGAATTGTTTCT
190 TTTGTCATTTTGTAAACAACT-TTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
*
345979 CTCTTGGTTC-TGTGACGAACTTTCC-AACTTGTGAAACTTTT---A----C----T---TT-GG
254 CTCTTGGTTCTTG-GACGAAC-TTCCGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGG
* * * * *
346027 TACCTTAAACTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCATGAA
317 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAA
*
346092 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAAGTTT-
382 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAAATTTTG
* * * * *
346138 GTCTTTGAATTAAAAACTTATTTACGTGAGAACTGTTTCACCCTTGGTTTTTAGACGAACTTCCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TTCTGGACGAACTTCCG
* *
346203 AACTTGTCAAACCTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGA-ATTCAAGACGATCCA
65 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA-ATATTCAAGACGATCCA
* * * *
346267 TTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT-AGTTTTGTCTAAACAGTT
129 TTCCTTCGAGCAATTTTT-GAACATTCCATGCTCAGGAAATCGCATCA-TTTGGTCTAAATAGTT
* * * *
346331 TGTCATTTTATTATCAACTTTTGATC-TTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCT
192 TGTCATTTTGTAAACAACTTTTG-TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * ** *
346395 ATTGGTT-TTGAGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTTTTTTATAACTTTGGTTC
256 CTTGGTTCTTG-GACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTC
* * * **
346459 CTTAAAATATTGAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCAAAAAATC
320 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATC
* * * * *
346524 GTATCATTTGGTCTAAATAGTTTTTCATTTTGT-TATCAACTTTG
385 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAAATTTTG
* **
346568 GTCTTTGAA-T---AACTTATCTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCCG
* * * ** * * *
346629 AATTTGGCAAACTTTTATGAGTTCCGTTATAACTTTGGTTCCTTAATGA-ATTCAAGATGATCCA
65 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA-AATATTCAAGACGATCCA
* * * * * * * *
346693 TTCCTTTGAGCAATTTTTCAAACATTTCATGCACAAGAAATAGCATTATTTGGTTTAAATAGTTT
129 TTCCTTCGAGCAATTTTT-GAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTT
* * **
346758 GTCATTTTCTAAACAAGTTTTGGTCTTTGAATTAAAAAAGTATTTACGTGAGAATTGTTTCTCT-
193 GTCATTTTGTAAACAACTTTT-GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * *
346822 TGGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCCTTTATAACTTTGGTTCCT
257 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCT
* * * * * * * * *
346887 TGAAGTATTCAATACGATTCATTCCTTGGAGCAATTTTTCTAACATTCTATGCTCGGGTAATCGA
322 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGC
* **
346952 ATCATTTGGTCCAAATAGTTTGTCATTTTGTAAATAGGTTTTG
387 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAAATTTTG
* *
346995 GTCTTTAAATTAAAAACTT-TTTACGTGAGAATTGTTTCTC-CATCGGTTCTGGGACGAACTTCC
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCT-GGACGAACTTCC
* * * * * * * * *
347058 TAACATGTCAAACTTTTACTAGTTCTTTAATAATTTTGGTTCCTTGAAGTATTCAAGACGATGCA
64 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCA
* * * *
347123 TTCCTTCGTGCAA-TTTT---C--T-C--G----GGAAATTGCTTCATTTGGTCAAAATAGTTTG
129 TTCCTTCGAGCAATTTTTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * * * * *
347175 TCATTTTCTAAACAAC-TTGGTCTTTAAATTAAAAACGTATTTACGTTAGAATTGTTTCACT-TG
194 TCATTTTGTAAACAACTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
** * * * * * *
347238 GGTTCTTGGACGAACTTAAGAAATTATCAAACTTTCACGAGATCCTTTATTACTTTGGTTCCTTA
259 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTA
* * * ** ** * * ***
347303 AAGCATTCAAGATGATCCATTCCTTTGAAAAAAATTTCGAACATTCCATGTTCGGGAAATTTAAT
324 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCAT
* * ** *
347368 CATTTTGTCTAAATAGTTTGTCATTTTGTAAAGATGTTTTA
389 CATTTGGTCTAAATAGTTTGTCATTTTGTAAATAAATTTTG
* * * *
347409 CTCTTTGAATTAAAAACTCATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACAAACTTTCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-GGACGAACTTCCG
* * *
347474 AACTTGTCAAACTTTTAC----T-TTGT-T-A--------CCTTAAAGTATTCAAGACGATGCAT
65 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCAT
* * *
347524 TCCTTCGAGCAATTTTTTGAACATTCCACGCTCAGGAAATCGTAACATTTGGTCTAAATAGTTTG
130 TCCTTCGAGCAA-TTTTTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * *
347589 TCATTTTGTAAAAAAGTTTGTGTCTTTGAATTAAAAACTTATTTGCATGAGAATTGTTTCTCTCT
194 TCATTTTGTAAACAACTTT-TGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* *
347654 TGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCCGTTATAACTTCGGTTCCTT
258 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTT
* * * *
347719 AATGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGCAAGAAATCGCA
323 AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCA
* * *
347784 TCATTTGGTCTAAATAGTTTGCCACTTTGTAAATAAATTTTT
388 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAAATTTTG
* * **
347826 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTTTATTGGTTCTGAGACGAACTTTTG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTG-GACGAACTTCCG
* *
347891 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTGCTTAAAATATTGAAGACGATCCAT
65 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCAT
* * *
347956 TCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTT
130 TCCTTCGAGCAATTTT-TGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * * * * *
348021 TCATTTTGTTATCAACTTTTGTCTTAGAATTGAAAACTTGTTTGCGTGAGAATTGATTCTCTCTT
194 TCATTTTGTAAACAACTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * **
348086 GGTTCTTGGACGAACTCCCGAACTTGTCAAACTTTTACGAGTTCCATTATAACGTCGGTTAATTA
259 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTA
* * * * * * *
348151 ATGTAATCAAGACAATCCATTCCTTCGAGCAATTTTCCAAACATTCCATGCACAAGAAATCGCAT
324 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCAT
* *
348216 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTTT
389 CATTTGGTCTAAATAGTTTGTCATTTTGTAAATAAATTTTG
* * ** * * ** * *
348257 ATATTTGAATTAAAAACTTATTTATTTGTGAATTGTTTCTTTAATGGTTCTAAGACAAACTTCCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-GGACGAACTTCCG
* ** *
348322 AACTTGTCAAACTTTTACGAATTCTTTTATAACTTCAATTCCTCAAAGA-ATTCAAGACGATCCA
65 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA-ATATTCAAGACGATCCA
* * *
348386 TTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGGGATATCGCAT-AGTTTTGTCTAAATAGTT
129 TTCCTTCGAGCAA-TTTTTGAACATTCCATGCTCAGGAAATCGCATCA-TTTGGTCTAAATAGTT
* * * * * *
348450 TGTCATTTTGTTATCAACTTTCTATC-TTGAATTAAAAACTTATTTACTTGATAATTGTTACTCT
192 TGTCATTTTGTAAACAACTTT-TGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * **
348514 CTTGGTTCTTGGACTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAATTCC
256 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCC
* ** * * * * * *
348579 TTAAAGAATTCTGGATGATCCATTAC-TCTGAGCAATTTTTCAAACTTTCCATGCTCAAGTAATC
321 TTAAAGTATTCAAGACGATCCATTCCTTC-GAGCAATTTTTCGAACATTCCATGCTCAGGAAATC
** * * **
348643 AAATCA--T--TCTAAATAGTTTGTCGTTTTGTAAACAGGTTTTG
385 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAATAAATTTTG
* * * * * * * *
348684 GTATTTAAATT--AAACATATTTTACCTGAGAATTGTTTCTCTATTGGTTCAGGGATGAAGTTCC
1 GTCTTTGAATTAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCC
* * * * *
348747 GAACTTATCAAACTTTTACTAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGATGCA
64 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCA
* * * *
348812 TTCCTTCAAGCAA-TTTT---C--T-C--G---A--AAATCACTTCATTTGGTCTAAGTAGTTTG
129 TTCCTTCGAGCAATTTTTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * *
348863 TCATTTTCTAAACAAGTTTTGGTCTTTGAATTAAGAACGTATTTACGTGAGAATTGTTTCTCT-T
194 TCATTTTGTAAACAACTTTT-GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* ** * * * *
348927 TGGTTCTTGGATGAACTTAAGAACTTGTCAAACTTTCACGAGATCCTTTATTACTTTGGTTCCTT
258 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTT
* ** *** * * * * *
348992 AAAAGTATTCAAGACGATCCATTCCTTCAAAAAAAAAAATT-GAACACTCAAAGCTCGGGAAATT
323 -AAAGTATTCAAGACGATCCATTCCTTC--GAGCAATTTTTCGAACATTCCATGCTCAGGAAATC
* * * * *
349056 GAATCATTAT-GTCTAAATAGTTTGTCATTTTTTAAAGATATTTTA
385 GCATCATT-TGGTCTAAATAGTTTGTCATTTTGTAAATAAATTTTG
* * * * * *
349101 CTCTTTGAAGTAAAAACTCATTTACGTGAGAATTGTTTCTCTCTTAGTTCTGGGACAAACTTTCG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-GGACGAACTTCCG
* * *
349166 AACTTGTCAAACTTTTAC----T-TTGT-T-A--------CCTTAAAGTATTCAAGATGATCCAT
65 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCAT
* ** * * *
349216 TCCTTCGAGCAATTTTTCGAACATTCTACACTCAGGAAATCACATCATTTGGTCAAAATAGATTG
130 TCCTTCGAGCAATTTTT-GAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * * *
349281 TCATTTTGTAAAAAAGC--GTGTCATTGAATTAAAAACTTATTTACTTGAGAATTGTTTCTCTAT
194 TCATTTTGTAAACAA-CTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
* ** * * ** * * *
349344 TAGTTCTAAGACAAACTTCCGAACTTATCAAACTTTTTTGAGTTCTTTTGTAACTTTGGTTCCTT
258 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTT
* * ** * * * * *
349409 AAAATATTGAAGATAATCCATTCCTTTGAGTAATTTTTTGAAAATTCCATGCTTAGGAAATCGCA
323 AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCA
** * * * *
349474 TCATTTCATCTAAATAGTTTTTCGTTTTGT-TATCAACTTTTG
388 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAAT-AAATTTTG
* * * * *
349516 GTCTTTGAATTAAAAACTTATTTGCGTGAGAATTGTTTCTCTCGTGGTTCTTGGATGAACCTCCA
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCCG
* ** * * * * *
349581 AACTTGTCAAACTTTTACAAGTTCCATTATCAGTTTGGTTCCTTAATGTATATTCAAGATGATCC
65 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA--AATATTCAAGACGATCC
* ** * * *
349646 ATTCCTTTGAGCAATTTTCCAAATATTCCATGCACAAGAAATCG---CA-----TC-----A--T
128 ATTCCTTCGAGCAATTTT-TGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTT
* *
349696 TGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCT
192 TGTCATTTTGTAAAC-AACTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * * * * *
349761 ATTGGTAC-TGAGATGAACTTCTGAACTTGTCAAACTAGTTT-----TTCATTTATAACTCCAGT
256 CTTGGTTCTTG-GACGAACTTCCGAACTTGTCAAACT--TTTACGAGTTCCTTTATAACTTCGGT
* * * * *
349820 TCCATAAAATATTTAAGACAATCCATTCCTTCGAGCAAGTTTTT-GAACATTCCATGCTCGGGAA
318 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTCGAACATTCCATGCTCAGGAA
* * *
349884 ATCACATCATTTGGT-TCAAATAGTTT-TCATTTTGT-TATCAACTTTTG
382 ATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAAT-AAATTTTG
* * * * *
349931 GACTTTGAATTAAAAGCTTATTTGCGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTG
1 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTCCG
* ** *
349996 AACTTGTCAAACTTTTACGAGTT-TTGTTATAACTTCAGTTCCTTAATGTTTTCAAGACGATCCA
65 AACTTGTCAAACTTTTACGAGTTCTT-TTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCA
* * * * *
350060 TTCCTTCAAGTAATTTTTTGAACATTCCATGCACAAGAAA-CTGTATCATTTGGTCTAAATAGTT
129 TTCCTTCGAGCAA-TTTTTGAACATTCCATGCTCAGGAAATC-GCATCATTTGGTCTAAATAGTT
* * * * *
350124 TGTCATTTTGTAAACAAATTTTTGTCTTTGAATTAAAAACTTATTTAAGTGGGAATTATTCCTCT
192 TGTCATTTTGTAAAC-AACTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * ** *
350189 TTTGGTTC-TGAGACAAACTTATGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
256 CTTGGTTCTTG-GACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTC
*
350253 CTTAGAA-TATTGAAGACGATCCAT
320 CTTA-AAGTATTCAAGACGATCCAT
350277 GATGCGAGCA
Statistics
Matches: 3386, Mismatches: 583, Indels: 324
0.79 0.14 0.08
Matches are distributed among these distances:
400 35 0.01
402 4 0.00
403 34 0.01
404 4 0.00
405 1 0.00
407 1 0.00
408 3 0.00
409 1 0.00
410 5 0.00
411 96 0.03
412 55 0.02
413 72 0.02
414 323 0.10
415 409 0.12
416 284 0.08
417 329 0.10
418 94 0.03
419 75 0.02
420 2 0.00
421 8 0.00
422 5 0.00
423 2 0.00
424 7 0.00
425 10 0.00
426 405 0.12
427 93 0.03
428 96 0.03
429 108 0.03
430 114 0.03
431 563 0.17
432 148 0.04
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (429 bp):
GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGACGAACTTCCGA
ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAATATTCAAGACGATCCATT
CCTTCGAGCAATTTTTGAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
ATTTTGTAAACAACTTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
TTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCCTTTATAACTTCGGTTCCTTAAA
GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCA
TTTGGTCTAAATAGTTTGTCATTTTGTAAATAAATTTTG
Found at i:351752 original size:74 final size:74
Alignment explanation
Indices: 351658--352028 Score: 663
Period size: 74 Copynumber: 5.0 Consensus size: 74
351648 CTTTACAAAA
* * *
351658 TGAAAGTGAACAACCATCATTCATCATTCATAAATGAATGCGTTTATTCATTTAAAAACTCTTGA
1 TGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
351723 ATGAAACAT
66 ATGAAACAT
*
351732 TGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTTATTCATTTAAAAACTCTTGA
1 TGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
351797 ATGAAACAT
66 ATGAAACAT
*
351806 TGAATGTGAACAATCATCATTCATCATTCATAAATGAATGTGTTGATT-ATTTAAAAACTCTTGA
1 TGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
*
351870 ATGAAATAT
66 ATGAAACAT
351879 TGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
1 TGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
351944 ATGAAACAT
66 ATGAAACAT
* *
351953 TGAATGTGAACAATCATCATTCATCATTCGTAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
1 TGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
352018 ATGAAACAT
66 ATGAAACAT
352027 TG
1 TG
352029 TATCCCTCCA
Statistics
Matches: 287, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
73 71 0.25
74 216 0.75
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (74 bp):
TGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
ATGAAACAT
Found at i:351931 original size:147 final size:148
Alignment explanation
Indices: 351658--352028 Score: 672
Period size: 147 Copynumber: 2.5 Consensus size: 148
351648 CTTTACAAAA
* * * *
351658 TGAAAGTGAACAACCATCATTCATCATTCATAAATGAATGCGTTTATTCATTTAAAAACTCTTGA
1 TGAATGTGAACAATCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
*
351723 ATGAAACATTGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTTATTCATTTAAA
66 ATGAAACATTGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAA
351788 AACTCTTGAATGAAACAT
131 AACTCTTGAATGAAACAT
351806 TGAATGTGAACAATCATCATTCATCATTCATAAATGAATGTGTTGATT-ATTTAAAAACTCTTGA
1 TGAATGTGAACAATCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
*
351870 ATGAAATATTGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAA
66 ATGAAACATTGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAA
351935 AACTCTTGAATGAAACAT
131 AACTCTTGAATGAAACAT
*
351953 TGAATGTGAACAATCATCATTCATCATTCGTAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
1 TGAATGTGAACAATCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
352018 ATGAAACATTG
66 ATGAAACATTG
352029 TATCCCTCCA
Statistics
Matches: 214, Mismatches: 8, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
147 144 0.67
148 70 0.33
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (148 bp):
TGAATGTGAACAATCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAAAACTCTTGA
ATGAAACATTGAATGTGAACAACCATCATTCATCATTCATAAATGAATGTGTTGATTCATTTAAA
AACTCTTGAATGAAACAT
Done.