genome.fa.s11830.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011830.1 Kokia drynarioides strain JFW-HI SEQ_126826, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140540

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108--175	9	8.1	9	72	18	58	1	36	0	61	1.05
109--178	4	17.0	4	75	16	54	1	34	0	64	1.03
119--157	20	2.0	20	100	0	78	2	35	0	61	1.10
108--178	11	5.7	13	73	15	69	1	35	0	63	1.03
109--177	34	2.0	35	88	2	104	1	34	0	63	1.03
1590--1631	22	2.0	21	90	9	68	71	0	28	0	0.86
2813--2841	14	2.1	14	100	0	58	6	6	27	58	1.50
2876--2908	16	2.0	17	88	5	50	27	12	0	60	1.32
3956--3993	20	1.9	20	94	0	67	10	0	47	42	1.38
8945--9048	40	2.6	40	81	0	118	32	18	19	29	1.95
15013--15130	61	1.9	60	87	3	173	30	22	14	32	1.94
15076--15319	52	4.7	52	85	4	294	32	23	14	29	1.95
22589--22641	27	2.0	27	84	0	70	39	16	13	30	1.87
30050--30091	20	2.0	21	86	4	59	33	0	26	40	1.56
30246--30357	47	2.4	47	81	11	122	16	25	18	39	1.91
30246--30357	23	4.7	23	80	12	102	16	25	18	39	1.91
30266--30356	48	1.9	47	82	6	112	15	25	19	39	1.91
30332--30406	39	1.9	39	86	5	107	14	22	18	44	1.86
32333--32408	38	2.0	38	94	0	134	31	21	5	42	1.75
33563--33612	18	2.8	18	93	0	82	28	26	24	22	1.99
37567--37607	15	2.7	15	88	3	64	51	4	9	34	1.56
38507--38606	40	2.5	40	86	0	128	26	18	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39746--39770	12	2.1	12	100	0	50	76	0	0	24	0.80
39745--39778	17	1.9	18	88	5	52	76	0	0	23	0.79
44539--44663	26	4.8	26	86	0	142	31	19	24	25	1.98
44524--44658	52	2.6	52	83	0	153	31	17	24	26	1.97
54464--54643	40	4.5	40	83	0	180	23	20	20	35	1.96
58521--58632	39	2.9	39	84	0	134	38	21	16	24	1.93
58533--58666	39	3.4	39	80	4	128	36	19	17	26	1.94
66464--66512	17	2.9	17	79	11	55	53	10	14	22	1.71
66905--66960	3	19.7	3	73	23	50	0	32	0	67	0.91
68725--68771	24	2.0	24	84	16	62	70	6	8	14	1.32
77308--77460	39	3.9	39	85	1	191	37	18	20	22	1.94
93464--93489	3	8.7	3	100	0	52	34	65	0	0	0.93
97815--97897	42	2.0	42	87	0	121	27	30	19	22	1.98
109300--109641	175	2.0	175	99	0	675	33	28	12	26	1.93
111237--111292	28	2.0	28	86	6	78	23	32	17	26	1.97
111925--112155	39	5.9	39	80	2	212	26	17	17	38	1.92
111925--112155	117	2.0	118	81	2	277	26	17	17	38	1.92
113161--113206	3	15.3	3	86	0	65	60	0	0	39	0.97
113161--113218	6	9.7	6	96	0	62	58	3	0	37	1.15
113161--113221	12	5.1	12	84	7	70	59	3	0	37	1.14
113161--113221	18	3.4	18	86	0	77	59	3	0	37	1.14
118687--119009	39	8.3	39	81	4	330	25	17	20	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119209--119327	63	1.9	63	82	5	150	23	29	19	27	1.98
122759--122798	22	2.0	21	85	14	57	57	5	5	32	1.42
122876--122900	2	12.5	2	100	0	50	48	0	0	52	1.00
124695--124730	19	1.9	18	88	5	54	41	16	0	41	1.48
125853--125898	22	2.1	22	100	0	92	47	17	4	30	1.67
128438--128481	23	1.9	23	85	0	61	54	4	6	34	1.47
128559--128603	2	22.5	2	100	0	90	48	0	0	51	1.00
128676--128700	2	12.5	2	100	0	50	48	0	0	52	1.00
134044--134093	22	2.4	20	86	6	64	40	0	2	58	1.10
134554--134618	33	2.0	33	96	0	121	46	18	3	32	1.65

Tables:   1

The End!