genome.fa.s11837.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011837.1 Kokia drynarioides strain JFW-HI SEQ_126833, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78873

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53--152	16	5.9	16	74	18	69	59	2	2	37	1.21
54--156	3	32.0	3	79	13	107	60	1	1	35	1.19
70--195	30	4.4	30	86	6	165	60	2	2	34	1.23
60--147	30	2.8	31	94	5	144	60	2	1	36	1.17
1315--1661	59	5.9	57	79	11	303	35	27	2	34	1.71
1376--1661	87	3.3	87	78	8	285	35	28	2	33	1.69
1315--1666	30	12.0	29	76	8	273	34	28	2	33	1.72
13308--13951	199	3.2	203	86	3	859	36	20	21	21	1.95
14313--14378	6	11.2	6	74	9	64	42	3	1	53	1.25
14305--14378	17	4.2	17	84	6	94	43	2	1	52	1.23
14312--14364	19	2.9	19	88	8	83	37	3	1	56	1.28
15134--15164	16	1.9	16	93	0	53	54	0	6	38	1.26
15141--15249	12	8.5	12	70	19	51	55	1	3	38	1.28
15223--15261	12	3.2	12	86	10	53	69	0	2	28	1.02
16364--16654	29	9.9	29	81	10	342	32	29	3	33	1.76
16362--16661	58	5.1	59	87	1	417	32	30	4	32	1.78
16374--16704	88	3.8	87	80	6	355	32	29	4	32	1.78
16362--16702	58	5.8	60	84	5	357	32	30	4	31	1.79
29588--29627	3	13.3	3	100	0	80	67	0	0	32	0.91
32206--32431	29	7.7	29	74	15	180	32	27	4	35	1.77
32206--32484	58	4.7	59	82	6	298	33	27	4	35	1.76
33549--33597	24	2.0	24	92	0	80	53	22	8	16	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37988--38027	21	1.9	21	100	0	80	60	12	0	27	1.33
38080--38121	12	3.4	12	83	3	57	71	4	0	23	1.05
38085--38148	24	2.7	24	80	17	64	73	7	0	18	1.07
38928--38967	17	2.3	17	86	4	53	57	5	2	35	1.34
46483--46632	29	5.1	29	73	4	86	32	4	28	35	1.78
46531--46708	29	6.1	29	73	11	123	33	3	28	34	1.74
46642--46892	29	8.6	29	74	10	172	38	2	22	36	1.67
46498--46697	86	2.3	88	82	6	230	32	4	28	35	1.76
46614--46759	59	2.5	59	85	4	183	36	2	25	35	1.71
46619--46776	59	2.7	59	82	6	164	37	3	22	36	1.70
46786--46892	30	3.6	30	87	2	146	39	1	22	36	1.65
46569--46871	144	2.1	143	81	7	346	36	3	23	36	1.72
47698--47736	17	2.3	17	81	0	51	12	15	5	66	1.41
62305--62348	22	2.0	22	83	12	56	27	9	4	59	1.48
78695--78761	33	2.0	33	85	0	89	11	4	52	31	1.58

Tables:   1

The End!