genome.fa.s11839.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011839.1 Kokia drynarioides strain JFW-HI SEQ_126835, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  265575

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--40	2	20.0	2	100	0	80	50	0	0	50	1.00
5477--5541	28	2.3	28	82	10	71	41	4	7	46	1.53
9227--9265	17	2.3	17	86	0	51	17	12	23	46	1.83
12643--12699	28	2.0	28	100	0	114	38	21	17	22	1.93
12793--12868	30	2.6	29	79	8	73	43	13	5	38	1.66
23468--23503	9	3.8	9	86	13	54	0	38	0	61	0.96
23467--23505	20	2.0	20	100	0	78	0	38	0	61	0.96
28862--28891	13	2.2	14	94	5	53	46	0	0	53	1.00
30344--30370	6	4.5	6	100	0	54	29	33	18	18	1.95
46409--46451	13	3.2	13	93	3	68	34	27	4	32	1.78
46731--47105	196	1.9	196	89	4	578	31	24	22	21	1.98
52042--52068	7	3.9	7	100	0	54	44	0	44	11	1.39
55680--55707	3	9.3	3	100	0	56	32	0	0	67	0.91
55680--55734	12	4.1	14	84	15	57	30	0	1	67	1.01
55698--55840	49	2.9	50	76	13	138	23	2	5	69	1.21
55884--55958	21	3.7	21	70	18	59	20	4	4	72	1.18
55884--55974	40	2.4	40	80	12	102	20	4	3	71	1.18
57862--58025	40	4.1	40	82	3	204	22	18	28	31	1.97
57846--58037	80	2.4	79	81	6	233	23	18	27	30	1.98
60611--60644	17	1.9	18	94	5	61	11	26	11	50	1.73
62604--62999	165	2.4	165	80	5	408	28	18	16	37	1.92
64784--64855	26	2.8	26	80	0	81	41	19	22	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68149--68635	183	2.7	183	90	0	751	30	12	14	42	1.82
75269--75352	20	4.4	19	69	11	64	65	1	2	30	1.13
75273--75352	10	8.4	9	72	13	54	66	1	2	30	1.13
75283--75408	26	4.6	26	70	14	83	61	1	2	34	1.18
76921--76991	8	8.5	8	70	14	54	32	0	1	66	1.01
76949--76991	17	2.5	17	81	7	52	27	0	2	69	1.00
77987--78017	6	5.2	6	100	0	62	35	64	0	0	0.94
81463--81508	2	23.0	2	100	0	92	50	0	0	50	1.00
82506--82547	20	2.0	23	86	13	63	2	28	9	59	1.41
87682--87736	27	2.1	27	83	6	69	14	10	5	69	1.35
88436--88470	11	3.2	11	95	0	61	0	20	0	80	0.72
88436--88473	16	2.4	16	86	8	51	0	21	0	78	0.74
88821--88853	17	1.9	17	93	0	57	21	18	21	39	1.93
98310--98387	39	2.0	39	100	0	156	33	33	10	23	1.88
99028--99052	10	2.5	10	100	0	50	92	0	0	8	0.40
106768--106812	16	3.0	16	78	12	51	37	0	2	60	1.09
107063--107144	29	2.8	29	85	9	96	36	7	12	43	1.70
107126--107185	32	1.9	32	82	3	77	36	6	10	46	1.64
111522--111546	13	1.9	13	100	0	50	48	8	0	44	1.32
111729--111952	112	2.0	112	89	6	348	16	24	12	45	1.83
129127--129167	18	2.3	18	87	8	57	56	2	9	31	1.45
136947--137163	59	3.7	59	84	8	248	35	2	25	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136982--137170	89	2.1	87	82	11	226	35	1	25	37	1.63
136947--137170	29	7.6	29	79	12	235	35	2	25	37	1.69
139083--139160	41	1.9	41	83	0	102	52	1	2	43	1.23
139092--139160	18	3.9	18	81	12	63	53	0	1	44	1.09
139092--139146	23	2.3	24	96	3	103	52	0	0	47	1.00
139116--139160	17	2.6	18	85	3	65	53	0	2	44	1.13
139092--139146	6	9.3	6	80	11	69	52	0	0	47	1.00
139918--139959	16	2.7	16	85	10	52	66	4	7	21	1.35
144641--144684	22	2.0	21	91	4	70	34	0	0	65	0.93
146730--146755	4	6.5	4	100	0	52	76	0	0	23	0.78
149227--149294	29	2.3	29	84	0	91	10	17	44	27	1.81
150229--150253	2	12.5	2	100	0	50	0	0	48	52	1.00
150334--150381	25	1.9	25	95	0	87	27	8	14	50	1.71
150332--150390	25	2.3	26	85	8	86	27	6	18	47	1.74
151851--151886	7	5.0	7	96	3	63	13	13	44	27	1.82
154985--155022	17	2.3	17	90	4	60	52	5	0	42	1.24
158292--158333	19	2.1	21	82	8	52	33	0	26	40	1.56
158415--158451	18	2.1	18	89	0	56	48	0	27	24	1.51
160331--160368	20	1.9	20	84	10	51	42	5	10	42	1.62
170111--170172	27	2.3	27	85	0	79	25	33	24	16	1.95
170702--170764	26	2.4	26	89	5	92	55	3	25	15	1.55
170715--170767	26	2.1	26	96	3	99	50	3	26	18	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173526--173583	28	2.1	28	83	6	73	32	1	15	50	1.55
173569--173618	26	1.9	26	91	0	82	36	0	6	58	1.23
173575--173624	26	1.9	26	91	0	82	32	0	10	58	1.31
173690--173730	6	6.8	6	83	10	57	65	14	2	17	1.37
175898--175965	34	2.0	34	94	0	118	39	0	2	57	1.14
176211--176237	9	3.0	9	100	0	54	44	11	11	33	1.75
176227--176789	287	2.0	287	93	1	959	35	9	6	48	1.61
176907--176944	20	1.9	19	94	5	67	52	5	0	42	1.24
176964--177006	12	3.4	12	81	12	50	0	25	0	74	0.82
177256--177295	16	2.7	15	84	7	55	30	0	0	70	0.88
177268--177304	19	1.9	19	89	10	58	29	0	0	70	0.88
182661--182708	18	2.7	18	78	9	53	58	2	2	37	1.22
191926--191959	17	2.0	17	94	0	59	32	0	2	64	1.08
196544--196607	31	2.1	29	85	5	83	48	12	12	26	1.76
200193--200219	4	6.8	4	100	0	54	77	0	22	0	0.76
205175--205212	2	19.0	2	100	0	76	0	50	0	50	1.00
225155--225196	21	2.0	21	85	0	57	64	0	35	0	0.94
230931--230973	21	2.1	21	91	4	70	60	13	0	25	1.34
231117--231160	12	3.8	12	88	8	65	61	2	0	36	1.09
231322--231370	10	4.9	10	83	13	57	0	38	0	61	0.96
231326--231387	17	3.7	17	77	12	58	0	33	0	66	0.92
238018--238085	8	7.8	8	75	16	55	69	1	2	26	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238044--238079	18	2.0	18	94	0	63	69	0	2	27	1.02
238018--238090	27	2.7	26	79	14	76	65	1	2	30	1.15
238353--238455	10	10.3	10	69	11	59	63	0	2	33	1.16
238378--238455	31	2.6	30	80	8	95	60	1	1	37	1.13
238944--238970	10	2.7	10	100	0	54	48	0	0	51	1.00
238865--238977	45	2.5	47	75	13	121	38	2	0	58	1.18
238855--238977	9	13.6	9	68	17	67	36	3	0	59	1.19
239465--239498	18	1.9	17	88	5	50	11	0	2	85	0.71
240028--240067	20	2.0	21	90	5	64	47	0	2	50	1.14
240520--240626	53	2.0	53	100	0	214	16	14	23	44	1.85
253954--254022	22	3.3	22	82	9	74	10	10	13	66	1.44
253997--254064	31	2.2	31	86	0	91	10	7	16	66	1.43
254061--254137	12	6.7	12	80	8	88	3	1	22	72	1.08
254050--254099	24	2.1	24	84	0	64	8	4	16	72	1.24
254058--254141	33	2.5	33	88	3	125	4	1	21	72	1.10
254074--254128	11	5.2	10	80	20	51	1	0	25	72	0.94
255331--255389	23	2.6	22	78	2	64	44	20	27	8	1.80
256517--256771	30	8.6	30	85	3	275	39	1	22	35	1.66
256499--256775	90	3.1	90	85	3	348	40	2	22	35	1.66
259001--259406	49	8.3	49	70	10	276	17	25	17	38	1.92
258958--259422	98	4.7	98	83	3	551	18	24	18	38	1.93
260250--260276	13	2.1	13	100	0	54	7	14	0	77	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261618--261652	16	2.1	17	89	5	54	60	5	14	20	1.54

Tables:   1

The End!