genome.fa.s11842.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011842.1 Kokia drynarioides strain JFW-HI SEQ_126838, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115207

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204--1276	23	3.2	23	94	0	128	39	24	21	13	1.90
1339--1386	26	1.9	24	84	16	62	31	20	0	47	1.50
8362--8409	23	2.1	23	84	7	62	12	8	0	79	0.94
12477--12545	31	2.2	31	86	0	93	50	2	1	44	1.25
21778--21805	14	2.0	14	100	0	56	42	21	21	14	1.88
24320--24795	238	2.0	238	88	2	715	36	6	14	41	1.72
27139--27189	13	3.7	13	82	17	59	3	33	0	62	1.13
28104--28145	19	2.2	19	100	0	84	35	0	19	45	1.50
28681--28712	12	2.6	12	95	5	55	78	0	9	12	0.97
28727--28782	6	9.8	6	92	7	91	30	0	0	69	0.89
28857--28898	22	1.9	22	85	0	57	11	9	4	73	1.22
34530--34586	20	2.9	21	72	25	52	75	3	1	19	1.04
34532--34591	13	4.4	14	78	14	72	76	3	1	18	1.00
34532--34587	27	2.1	27	90	3	87	76	3	1	17	1.01
34607--34649	16	2.8	16	82	3	52	74	6	2	16	1.14
34634--34681	24	1.9	25	84	16	64	64	12	2	20	1.37
35501--35554	28	1.9	28	96	0	99	25	11	20	42	1.85
44201--44259	29	2.0	29	96	0	109	44	13	22	20	1.86
51151--51339	86	2.2	86	92	2	310	35	11	16	35	1.85
55439--55795	68	5.3	67	78	7	318	24	20	18	36	1.95
58067--58360	30	10.0	29	82	8	319	38	4	23	34	1.74
58053--58377	87	3.7	88	81	7	288	38	3	22	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58611--58685	36	2.1	35	92	2	123	14	38	13	33	1.85
59937--59970	17	2.1	16	94	5	59	58	0	0	41	0.98
61026--61098	26	2.9	25	86	6	112	34	16	8	41	1.78
64678--64722	14	3.4	13	84	12	56	28	0	2	68	1.01
64664--64720	20	3.0	20	75	14	57	26	0	3	70	1.03
71019--71113	22	4.3	21	80	11	95	16	3	2	77	0.99
71015--71113	31	3.0	33	78	14	105	16	4	2	77	1.01
71015--71082	18	3.8	18	81	11	77	14	5	0	79	0.91
71064--71121	26	2.3	26	85	8	75	17	0	5	77	0.94
81214--81270	28	2.0	30	86	6	82	29	1	3	64	1.20
86166--86196	16	1.9	16	93	0	53	32	9	19	38	1.84
88424--88456	16	2.1	16	100	0	66	48	12	15	24	1.78
89159--89192	18	1.9	18	88	5	52	55	2	2	38	1.30
90480--90511	13	2.4	14	90	10	50	37	0	0	62	0.95
93621--93796	86	2.0	86	100	0	352	36	12	19	30	1.89
94171--94229	17	3.5	17	83	4	75	42	0	3	54	1.17
94924--94961	14	2.6	15	91	4	60	55	0	0	44	0.99
94933--94957	12	2.1	12	100	0	50	60	0	0	40	0.97
95662--95706	17	2.6	17	92	0	81	31	37	15	15	1.89
96087--96244	29	5.4	28	74	14	140	34	34	4	26	1.77
96082--96257	59	3.0	58	88	3	262	33	34	5	27	1.79
96105--96253	30	5.1	29	69	20	112	32	33	4	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103944--104011	33	2.1	33	100	0	136	25	17	29	27	1.97
108353--108508	77	2.0	76	96	2	294	30	22	27	19	1.98
108431--109141	205	3.5	205	90	0	1100	35	20	23	19	1.96
109738--109780	17	2.5	17	84	0	59	41	0	4	53	1.21
110429--110462	12	2.6	13	86	13	52	52	2	0	44	1.16
111577--111672	30	3.3	29	79	15	108	31	35	5	28	1.79
111577--111682	29	3.6	29	79	12	117	33	33	4	28	1.78

Tables:   1

The End!