Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011846.1 Kokia drynarioides strain JFW-HI SEQ_126842, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3804
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29


Found at i:3058 original size:45 final size:45

Alignment explanation


    Indices: 2992--3105  Score: 147
    Period size: 45  Copynumber: 2.5  Consensus size: 45

       2982 GGAGGAATAA

                 *   *                             *     
       2992 AGTATCGCGATGGCTCGTCAAACTCAGCCTGATATCCTTTCCTTG
          1 AGTATTGCGGTGGCTCGTCAAACTCAGCCTGATATCCTTGCCTTG

                            *     * *  *            *    
       3037 AGTATTGCGGTGGCTCATCAAATTGAGGCTGATATCCTTGGCTTG
          1 AGTATTGCGGTGGCTCGTCAAACTCAGCCTGATATCCTTGCCTTG

                    *               
       3082 AGTATTGCAGTGGCTCGTCAAACT
          1 AGTATTGCGGTGGCTCGTCAAACT

       3106 GTGTAGGCTG


Statistics
Matches: 58,  Mismatches: 11, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  45   58  1.00

ACGTcount: A:0.21, C:0.23, G:0.25, T:0.32


Consensus pattern (45 bp):   
AGTATTGCGGTGGCTCGTCAAACTCAGCCTGATATCCTTGCCTTG
Done.