Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011857.1 Kokia drynarioides strain JFW-HI SEQ_126854, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2510
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33


Found at i:2195 original size:18 final size:18

Alignment explanation


    Indices: 2172--2210  Score: 78
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       2162 TGTGATACGA

                              
       2172 TAATCAAAGTACTTACAT
          1 TAATCAAAGTACTTACAT

                              
       2190 TAATCAAAGTACTTACAT
          1 TAATCAAAGTACTTACAT

               
       2208 TAA
          1 TAA

       2211 GTATTTATGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.46, C:0.15, G:0.05, T:0.33


Consensus pattern (18 bp):   
TAATCAAAGTACTTACAT
Done.