genome.fa.s11858.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011858.1 Kokia drynarioides strain JFW-HI SEQ_126855, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158970

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646--708	24	2.6	23	80	14	65	44	3	1	50	1.27
10573--10910	169	2.0	169	97	0	631	36	15	18	28	1.92
20057--20114	31	1.9	30	82	10	73	44	12	5	37	1.64
20564--20620	23	2.6	23	88	5	82	24	0	7	68	1.14
24840--24890	25	2.0	25	100	0	102	33	19	23	23	1.97
25815--25890	19	3.8	20	78	11	68	64	1	1	32	1.10
25838--25898	19	3.2	19	76	13	63	72	1	1	24	1.03
25794--25939	9	15.7	9	69	18	68	63	2	3	30	1.25
26105--26280	19	9.7	18	67	20	73	31	3	2	61	1.27
26105--26280	10	19.3	9	69	18	73	31	3	2	61	1.27
26174--26232	27	2.2	26	84	3	73	30	1	1	66	1.12
31597--31635	21	1.9	19	85	10	51	38	2	2	56	1.27
34605--34726	61	2.0	60	85	4	165	41	15	5	36	1.71
37184--37626	219	2.0	219	97	0	841	44	6	16	32	1.74
38168--38206	6	6.5	6	90	0	51	51	0	25	23	1.49
38163--38202	18	2.2	19	86	4	55	57	0	20	22	1.41
38305--38411	37	2.8	38	77	5	108	24	15	26	33	1.95
39715--39769	24	2.2	24	87	9	76	20	0	7	72	1.07
39731--39770	12	3.4	12	86	3	55	25	0	5	70	1.08
39823--39863	21	2.0	21	95	0	73	31	0	12	56	1.36
40978--41111	23	5.8	23	82	3	162	43	23	17	15	1.87
40975--41123	69	2.2	69	81	0	181	44	22	18	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43631--43665	5	6.6	5	87	12	52	80	2	0	17	0.84
43712--43745	11	3.0	11	83	8	50	70	2	0	26	1.01
43712--43761	25	2.1	23	85	7	64	70	8	0	22	1.13
44020--44062	22	2.0	22	86	9	61	2	20	0	76	0.89
51613--51678	23	2.8	23	79	2	78	28	10	18	42	1.83
51703--51765	30	2.2	28	83	13	76	55	11	6	26	1.59
52941--52966	2	13.0	2	100	0	52	50	0	0	50	1.00
60774--60817	2	22.0	2	90	0	70	0	54	0	45	0.99
60777--60830	6	9.3	6	95	2	58	0	57	0	42	0.98
64951--64995	21	2.1	21	100	0	90	37	17	20	24	1.93
64951--65007	21	2.7	21	88	0	60	38	17	21	22	1.93
65018--65118	23	4.5	23	80	7	118	44	20	18	15	1.87
65018--65122	46	2.3	46	83	8	135	44	21	18	15	1.86
67869--68079	105	2.0	105	82	5	257	31	10	12	45	1.75
72048--72111	23	2.7	23	85	7	74	14	20	20	45	1.85
72062--72203	23	6.2	23	76	12	116	15	21	19	42	1.88
78277--78317	18	2.4	17	87	4	55	29	9	7	53	1.60
83169--83198	3	10.0	3	100	0	60	66	0	0	33	0.92
87687--87757	35	2.0	35	81	5	81	50	12	7	29	1.66
87839--87874	18	2.0	18	88	0	54	30	0	2	66	1.06
103548--103592	4	11.0	4	97	2	81	0	24	2	73	0.95
109317--109403	41	2.1	42	91	4	140	42	12	10	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112143--112340	99	2.0	99	96	0	369	35	14	11	38	1.82
112365--112389	5	5.0	5	100	0	50	20	0	0	80	0.72
120246--120443	59	3.3	58	77	10	186	30	14	13	41	1.84
120248--120391	61	2.4	59	81	11	177	30	13	15	40	1.85
120238--120503	120	2.2	119	79	9	283	28	13	13	43	1.82
120427--120561	58	2.3	61	78	10	152	28	13	13	44	1.81
120462--120573	58	1.9	58	81	5	136	28	15	14	41	1.86
120583--121001	60	7.0	59	73	12	257	39	13	17	28	1.89
120583--120962	121	3.2	119	76	12	316	40	13	18	27	1.89
120616--121036	181	2.3	178	80	9	444	39	14	18	28	1.89
123063--123116	24	2.2	24	100	0	108	25	16	16	40	1.89
142299--142470	86	2.0	86	97	0	326	25	17	23	33	1.96
151975--152047	24	3.1	23	77	11	60	41	4	2	52	1.35
154913--154991	24	3.4	24	75	10	83	43	1	0	55	1.07
154897--154996	45	2.2	46	87	1	139	44	1	2	53	1.19
156109--156154	15	3.1	15	73	17	51	28	4	10	56	1.53
157041--157090	23	2.2	23	85	7	66	26	6	2	66	1.26
158313--158402	44	2.0	44	95	0	162	33	14	7	44	1.74

Tables:   1

The End!