Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011859.1 Kokia drynarioides strain JFW-HI SEQ_126856, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 112272
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
Warning! 183 characters in sequence are not A, C, G, or T
Found at i:736 original size:21 final size:22
Alignment explanation
Indices: 690--747 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 22
680 CTCTGGCATT
* *
690 TGTTGTATCGGTAGAAGGTTAG
1 TGTTGTATCGGTAGAAGCTCAG
*
712 -GTTGTATTGGTAGAA-CTCAG
1 TGTTGTATCGGTAGAAGCTCAG
* *
732 TGTTGTGTCAGTAGAA
1 TGTTGTATCGGTAGAA
748 CTGAATGTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
20 3 0.10
21 26 0.90
ACGTcount: A:0.24, C:0.07, G:0.33, T:0.36
Consensus pattern (22 bp):
TGTTGTATCGGTAGAAGCTCAG
Found at i:9116 original size:45 final size:45
Alignment explanation
Indices: 9052--9139 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
9042 TGCATGGTAG
*
9052 AACTTAATCCTGGTATGTATTCTCCCATGTTCTGTCCCATGTTAC
1 AACTTAATCCTGGCATGTATTCTCCCATGTTCTGTCCCATGTTAC
*
9097 AACTTATTCCTGGCATGTATTCTCCCATGTTCTGTCCCATGTT
1 AACTTAATCCTGGCATGTATTCTCCCATGTTCTGTCCCATGTT
9140 TAGTGGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.41
Consensus pattern (45 bp):
AACTTAATCCTGGCATGTATTCTCCCATGTTCTGTCCCATGTTAC
Found at i:10658 original size:30 final size:29
Alignment explanation
Indices: 10604--10660 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
10594 AAATATGATA
*
10604 AATTATATTTTTAAAAAAGAATCTATTTT
1 AATTATATTTTTAAAAAACAATCTATTTT
* *
10633 AATTATATATTTTAAAATACCATCTATT
1 AATTATAT-TTTTAAAAAACAATCTATT
10661 AACTTGTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 8 0.33
30 16 0.67
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (29 bp):
AATTATATTTTTAAAAAACAATCTATTTT
Found at i:10858 original size:14 final size:16
Alignment explanation
Indices: 10828--10863 Score: 58
Period size: 14 Copynumber: 2.4 Consensus size: 16
10818 TATAAACCGG
10828 AATTATTAATCATTTA
1 AATTATTAATCATTTA
10844 AATT-TTAAT-ATTTA
1 AATTATTAATCATTTA
10858 AATTAT
1 AATTAT
10864 AAATAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 9 0.47
15 6 0.32
16 4 0.21
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTATTAATCATTTA
Found at i:10868 original size:15 final size:15
Alignment explanation
Indices: 10828--10868 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
10818 TATAAACCGG
10828 AATTATTAATCATTTA
1 AATTATTAAT-ATTTA
10844 AATT-TTAATATTTA
1 AATTATTAATATTTA
*
10858 AATTATAAATA
1 AATTATTAATA
10869 AATATTGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 9 0.39
15 10 0.43
16 4 0.17
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
AATTATTAATATTTA
Found at i:21558 original size:26 final size:26
Alignment explanation
Indices: 21529--21588 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
21519 TTTTACCTAG
* * *
21529 TAAAATTTTGATAACTTTATCCTCGA
1 TAAAATTTTAACAACTTTACCCTCGA
* *
21555 TAAAATTTTAACAATTTTACCCTTGA
1 TAAAATTTTAACAACTTTACCCTCGA
21581 TAAAATTT
1 TAAAATTT
21589 CGAGAAAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.43
Consensus pattern (26 bp):
TAAAATTTTAACAACTTTACCCTCGA
Found at i:26369 original size:24 final size:25
Alignment explanation
Indices: 26342--26388 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
26332 TTTAAGTGGA
*
26342 TGAA-ATTTGTTTGAGTTTTTTTTT
1 TGAATATTTGTTTGAGCTTTTTTTT
26366 TGAATATTTGTTTGAGCTTTTTT
1 TGAATATTTGTTTGAGCTTTTTT
26389 AGTTAGATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.17, C:0.02, G:0.17, T:0.64
Consensus pattern (25 bp):
TGAATATTTGTTTGAGCTTTTTTTT
Found at i:27114 original size:10 final size:10
Alignment explanation
Indices: 27087--27130 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
27077 ACAATAATAT
*
27087 TTTTCTTTAA
1 TTTTCTATAA
27097 TTTT-TATAA
1 TTTTCTATAA
27106 TTTTCTATAA
1 TTTTCTATAA
*
27116 TATTTCAATAA
1 T-TTTCTATAA
27127 TTTT
1 TTTT
27131 AGTAAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 8 0.27
10 13 0.43
11 9 0.30
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.64
Consensus pattern (10 bp):
TTTTCTATAA
Found at i:28834 original size:20 final size:20
Alignment explanation
Indices: 28811--28863 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
28801 TTAAATCAAT
*
28811 TATTATTTAATTAGCAAATA
1 TATTATTTAATTAGAAAATA
*
28831 TATT-TTTAAAAATTATAAAATA
1 TATTATTT---AATTAGAAAATA
28853 TATTATTTAAT
1 TATTATTTAAT
28864 AAATTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
19 3 0.11
20 7 0.26
22 14 0.52
23 3 0.11
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (20 bp):
TATTATTTAATTAGAAAATA
Found at i:28845 original size:22 final size:24
Alignment explanation
Indices: 28819--28874 Score: 71
Period size: 22 Copynumber: 2.4 Consensus size: 24
28809 ATTATTATTT
*
28819 AATTAGCAAATATATT-TTTAA-A
1 AATTAGAAAATATATTATTTAATA
*
28841 AATTATAAAATATATTATTTAATA
1 AATTAGAAAATATATTATTTAATA
*
28865 AATTAAAAAA
1 AATTAGAAAA
28875 ATAAACAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 14 0.48
23 5 0.17
24 10 0.34
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (24 bp):
AATTAGAAAATATATTATTTAATA
Found at i:28877 original size:25 final size:22
Alignment explanation
Indices: 28826--28874 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 22
28816 TTTAATTAGC
*
28826 AAATATATTTTTAAAAATTATA
1 AAATATATTTTTAAAAATTAAA
28848 AAATATATTATTTAATAAATTAAA
1 AAATATATT-TTTAA-AAATTAAA
28872 AAA
1 AAA
28875 ATAAACAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 9 0.38
23 5 0.21
24 10 0.42
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AAATATATTTTTAAAAATTAAA
Found at i:30184 original size:23 final size:23
Alignment explanation
Indices: 30158--30206 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
30148 AATACTTGTG
*
30158 AATATATTCAATTAA-ATTAAATA
1 AATATATTC-ATGAATATTAAATA
*
30181 AATATATTCGTGAATATTAAATA
1 AATATATTCATGAATATTAAATA
30204 AAT
1 AAT
30207 GAACATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (23 bp):
AATATATTCATGAATATTAAATA
Found at i:42946 original size:24 final size:24
Alignment explanation
Indices: 42911--42969 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
42901 GTAAGTACAT
*
42911 ATTTCAAATTTTAATTATTTTTTA
1 ATTTCAAATTTTAATTAATTTTTA
*
42935 ATTT-AAACTTTTGATTAATTTTTA
1 ATTTCAAA-TTTTAATTAATTTTTA
* *
42959 CTTTTAAATTT
1 ATTTCAAATTT
42970 ATTCAAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 3 0.10
24 24 0.80
25 3 0.10
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (24 bp):
ATTTCAAATTTTAATTAATTTTTA
Found at i:43591 original size:10 final size:10
Alignment explanation
Indices: 43573--43765 Score: 53
Period size: 10 Copynumber: 19.3 Consensus size: 10
43563 TTTCTATTTG
*
43573 AAATCATAAA
1 AAATTATAAA
43583 AAATTATAAAA
1 AAATTAT-AAA
*
43594 AAATGTATAGA
1 AAAT-TATAAA
43605 AAATTATTTAAA
1 AAATTA--TAAA
*
43617 AAA--ATATA
1 AAATTATAAA
*
43625 AAA-TACAAA
1 AAATTATAAA
*
43634 AAAGTAT-AA
1 AAATTATAAA
*
43643 AAAGTATAAA
1 AAATTATAAA
*
43653 ATAA-T-TACA
1 A-AATTATAAA
*
43662 AAA-TAAAAA
1 AAATTATAAA
* *
43671 AAATTATTTAG
1 AAATTA-TAAA
* *
43682 AAACTAT-GA
1 AAATTATAAA
43691 AAATTATAAAGA
1 AAATTAT-AA-A
**
43703 AAATTATTGA
1 AAATTATAAA
* *
43713 AAGTTATAGA
1 AAATTATAAA
43723 AAA-TATAAA
1 AAATTATAAA
* *
43732 AAAATATTCAA
1 AAATTA-TAAA
* *
43743 AAATAATATA
1 AAATTATAAA
*
43753 AAATTACAAA
1 AAATTATAAA
43763 AAA
1 AAA
43766 AACTTAATAA
Statistics
Matches: 135, Mismatches: 32, Indels: 32
0.68 0.16 0.16
Matches are distributed among these distances:
8 9 0.07
9 38 0.28
10 43 0.32
11 28 0.21
12 17 0.13
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.26
Consensus pattern (10 bp):
AAATTATAAA
Found at i:43624 original size:22 final size:20
Alignment explanation
Indices: 43573--43627 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 20
43563 TTTCTATTTG
43573 AAATCATAAAAAATTATAAAA
1 AAAT-ATAAAAAATTATAAAA
*
43594 AAATGTATAGAAAATTATTTAAAA
1 AAA--TATAAAAAATTA--TAAAA
43618 AAATATAAAA
1 AAATATAAAA
43628 TACAAAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
21 3 0.11
22 16 0.57
23 1 0.04
24 8 0.29
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (20 bp):
AAATATAAAAAATTATAAAA
Found at i:43672 original size:37 final size:38
Alignment explanation
Indices: 43588--43673 Score: 95
Period size: 37 Copynumber: 2.3 Consensus size: 38
43578 ATAAAAAATT
* * *
43588 ATAAAAAAATGTATAGAAAATTATTTAAAAAAATATAAA
1 ATAAAAAAAAGTATAGAAAAGTA-TTAAAAAAATACAAA
* *
43627 ATACAAAAAAGTATA-AAAAGTA-TAAAATAATTACAAA
1 ATAAAAAAAAGTATAGAAAAGTATTAAAA-AAATACAAA
43664 ATAAAAAAAA
1 ATAAAAAAAA
43674 TTATTTAGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
36 5 0.12
37 16 0.40
38 6 0.15
39 13 0.32
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (38 bp):
ATAAAAAAAAGTATAGAAAAGTATTAAAAAAATACAAA
Found at i:43725 original size:32 final size:30
Alignment explanation
Indices: 43661--43736 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 30
43651 AAATAATTAC
43661 AAAATA-AAAAAAATTATTTAGAAACTATG
1 AAAATATAAAAAAATTATTTAGAAACTATG
*
43690 AAAATTATAAAGAAAATTA-TT-GAAAGTTATAG
1 AAAA-TATAAA-AAAATTATTTAGAAA-CTAT-G
43722 AAAATATAAAAAAAT
1 AAAATATAAAAAAAT
43737 ATTCAAAAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
29 4 0.10
30 11 0.27
31 14 0.34
32 12 0.29
ACGTcount: A:0.63, C:0.01, G:0.08, T:0.28
Consensus pattern (30 bp):
AAAATATAAAAAAATTATTTAGAAACTATG
Found at i:43766 original size:22 final size:21
Alignment explanation
Indices: 43741--43800 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
43731 AAAAATATTC
43741 AAAAATAATATAAAATTACAAA
1 AAAAATAATA-AAAATTACAAA
*
43763 AAAAACTTAATAAAAA-TACAAT
1 AAAAA--TAATAAAAATTACAAA
*
43785 AAATAT-ATAAAAATTA
1 AAAAATAATAAAAATTA
43801 TTTGTAGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
19 7 0.21
20 3 0.09
22 14 0.42
23 4 0.12
24 5 0.15
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAAATAATAAAAATTACAAA
Found at i:44170 original size:9 final size:9
Alignment explanation
Indices: 44156--44185 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
44146 TTACTAATTT
44156 AAAATTTTA
1 AAAATTTTA
44165 AAAATTTTA
1 AAAATTTTA
*
44174 AAAAATTTA
1 AAAATTTTA
44183 AAA
1 AAA
44186 GAAAACTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
AAAATTTTA
Found at i:49157 original size:24 final size:24
Alignment explanation
Indices: 49130--49202 Score: 137
Period size: 24 Copynumber: 3.0 Consensus size: 24
49120 CATGTCATTG
*
49130 GTAATGCTAAGGGTTGGTGTTAGT
1 GTAATGCTAGGGGTTGGTGTTAGT
49154 GTAATGCTAGGGGTTGGTGTTAGT
1 GTAATGCTAGGGGTTGGTGTTAGT
49178 GTAATGCTAGGGGTTGGTGTTAGT
1 GTAATGCTAGGGGTTGGTGTTAGT
49202 G
1 G
49203 GGTATATCCC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.18, C:0.04, G:0.41, T:0.37
Consensus pattern (24 bp):
GTAATGCTAGGGGTTGGTGTTAGT
Found at i:50810 original size:2 final size:2
Alignment explanation
Indices: 50803--50840 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
50793 TAGATTAAAT
50803 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50841 CTTTACGAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51595 original size:24 final size:24
Alignment explanation
Indices: 51567--51623 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
51557 GACTAATAAG
*
51567 AGTTTGACTCAAACAAATAAACAA
1 AGTTTAACTCAAACAAATAAACAA
* * *
51591 AGTTTAATTGAAACAAATAAACAG
1 AGTTTAACTCAAACAAATAAACAA
51615 AGTTTAACT
1 AGTTTAACT
51624 AAAAGTTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.51, C:0.12, G:0.11, T:0.26
Consensus pattern (24 bp):
AGTTTAACTCAAACAAATAAACAA
Found at i:54554 original size:183 final size:183
Alignment explanation
Indices: 54222--54575 Score: 514
Period size: 183 Copynumber: 1.9 Consensus size: 183
54212 GACTTGGCAG
* * *
54222 TCGATCGTCATCCCTAATTATATCTCTCCATTCATCTCTATTAGAGACATGTTTCAATAGAGGGT
1 TCGATCATCATCCCTAATTAAATCTCTCCATTCATCCCTATTAGAGACATGTTTCAATAGAGGGT
* * *
54287 TTTCTTGGATTTTCAAAGCTTTCCATTCACTAGAGTTGGAAATCAGATTTCTCAAAAGGTTGAGA
66 TTTCTTGAATCTTCAAAGCTTTCCAATCACTAGAGTTGGAAATCAGATTTCTCAAAAGGTTGAGA
* *
54352 TAAACCTTTCTCTTTCGATTGAGGAGTGAATTTGATTCCATCTCCAACAAAAT
131 TAAACCTTTCTCCTTCGATTAAGGAGTGAATTTGATTCCATCTCCAACAAAAT
* * *
54405 TCGATCATCATCCTTAATTAAATCTCTCCTTTCATCCCTATTAGAGA-TTGGTTTCAATAGAGGG
1 TCGATCATCATCCCTAATTAAATCTCTCCATTCATCCCTATTAGAGACAT-GTTTCAATAGAGGG
* * ** * *
54469 TTTTCTTGAATCTTCAAAGCTTTCTAATCA-TCGGAGTTGGAAATTGGATTTCTTAAAGGGTTGA
65 TTTTCTTGAATCTTCAAAGCTTTCCAATCACT-AGAGTTGGAAATCAGATTTCTCAAAAGGTTGA
*
54533 GATAACCCTTTCTCCTTCGATTAAGGAGTGAATTTGATTCCAT
129 GATAAACCTTTCTCCTTCGATTAAGGAGTGAATTTGATTCCAT
54576 GGTTTAATAA
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
182 2 0.01
183 149 0.99
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (183 bp):
TCGATCATCATCCCTAATTAAATCTCTCCATTCATCCCTATTAGAGACATGTTTCAATAGAGGGT
TTTCTTGAATCTTCAAAGCTTTCCAATCACTAGAGTTGGAAATCAGATTTCTCAAAAGGTTGAGA
TAAACCTTTCTCCTTCGATTAAGGAGTGAATTTGATTCCATCTCCAACAAAAT
Found at i:55170 original size:18 final size:18
Alignment explanation
Indices: 55156--55190 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
55146 ATAATTAATT
55156 TAAAATT-TTTAATTAAA
1 TAAAATTATTTAATTAAA
*
55173 TAAATTTATTTAATTAAA
1 TAAAATTATTTAATTAAA
55191 AACTTATTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAAATTATTTAATTAAA
Found at i:57267 original size:111 final size:111
Alignment explanation
Indices: 56841--57665 Score: 768
Period size: 111 Copynumber: 7.4 Consensus size: 111
56831 CGCACTGGTT
* ** * * *
56841 TTTTTTTGAAAATTTACCAATCTACATTGTTATTAAAGAGAGAAAAGAAAATGCGTCCTATAAAG
1 TTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAAAAAAGAAAATGCGTTCTATAGAG
* * * *
56906 AGCGTTTTCATTGATCTAGTAGAGAAAGCATGTCCTGTAAGACACGTTT
66 AGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTGTAAG--ACG-TG
* * * * * *
56955 TTTTTTTGAAGATTTAACAATTTACATTGTTATTAGAGAGAGAAAA-AAAATGCG-TCATACAAA
1 TTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAAAAAAGAAAATGCGTTC-TATAGA
* * * ** *
57018 TAGTGTTTTCATTGATCTAGAAGAGAAAATACGCCCTGTAAGATGCGTTTT
65 GAGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTGTAAGA--CG--TG
* * * * * *
57069 TTTTTTTGAAGATTTACCAATTTACATTATTATTAGAGAGAAAAAAG--AATGGGTCCTATAGAT
1 TTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAAAAAAGAAAATGCGTTCTATAGAG
* * *
57132 AGTGTTTTCATTGATCTAGCAGAGAAAGTACGCCCTATAAGACGTG
66 AGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTGTAAGACGTG
* * *
57178 TTTTTTTGAAGATTTACCAATCTATATTGTTATTGGAGATAAAAAAGAAAATGTGTTCTATAGAG
1 TTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAAAAAAGAAAATGCGTTCTATAGAG
* * * * * *
57243 AACGTTTTCATTGATCTAGTAGAGAAAGCACACCATATAAGACGTA
66 AGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTGTAAGACGTG
* ***
57289 TTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAGAAAAGAAAACATGTTCTATAGAG
1 TTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAAAAAAGAAAATGCGTTCTATAGAG
** * * *** * *
57354 AAAGTTTTTATTGATCTAGCAGAGAAAGCATGTTTTATAAGACGCG
66 AGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTGTAAGACGTG
* * * * *
57400 TTTTTTTGAAGATTTATCAATTTACATTGTTATTGAAGAGAAAAAAGAAAATGCGTCCTATAAAG
1 TTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAAAAAAGAAAATGCGTTCTATAGAG
* * * * * *
57465 AGCATTTTCATTTATCTAACAGAG-AA--A--CCTTGTAAGATGGTTTTTT
66 AGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTGTAAGA-CG----TG
* * * *
57511 TTTTTTTGAAGATTTACAAATTTACATTATTATTGGAGAGAGAAAAGAAAATGCGTTCTATAGAG
1 TTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAAAAAAGAAAATGCGTTCTATAGAG
* * * * ** * *
57576 AGCGTTTTCATTAATCTAACAAAAAAAGCACGCATTGTAATACGCG
66 AGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTGTAAGACGTG
* *
57622 TTTTTTTGAATATTTACCAATCTACATTGTTATTGAAGAGAAAA
1 TTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAAAA
57666 GAAAACACGT
Statistics
Matches: 596, Mismatches: 97, Indels: 39
0.81 0.13 0.05
Matches are distributed among these distances:
106 7 0.01
107 1 0.00
108 1 0.00
109 43 0.07
110 2 0.00
111 341 0.57
112 3 0.01
113 99 0.17
114 90 0.15
115 1 0.00
116 8 0.01
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (111 bp):
TTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAAAAAAGAAAATGCGTTCTATAGAG
AGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTGTAAGACGTG
Found at i:57375 original size:222 final size:222
Alignment explanation
Indices: 56839--57791 Score: 870
Period size: 222 Copynumber: 4.2 Consensus size: 222
56829 AACGCACTGG
* * ** * *
56839 TTTTTTTTTGAAAATTTACCAATCTACATTGTTATTAAAGAGAGAAAAGAAAATGCGTCCTATAA
1 TTTTTTTTTGAAGATTTACCAATCTACATTATTATTGGAGAGAGAAAAGAAAATACGTCCTATAG
* * * * *
56904 AGAGCGTTTTCATTGATCTAGTAGAGAAAGCATGTCCTGTAAGACACGTTTTTTTTTTGAAGATT
66 AGAGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTATAAGACGCG---TTTTTTTGAAGATT
* * * * * **
56969 TAACAATTTACATTGTTATT-AGAGAGAGAAAA-AAAATGCG-TCATACAAATAGTGTTTTCATT
128 TACCAATCTACATTGTTATTGA-AGAGAAAAAAGAAAATGCGTTC-TATAAAGAACGTTTTCATT
* * *
57031 GATCTAGAAGAGAAAATACGCCCTGTAAGATGCGTT
191 GATCTAG-AGAG-AAAGACACCATGTAAGAT-CG-T
* **
57067 TTTTTTTTTGAAGATTTACCAATTTACATTATTATT--AGAGAGAAAA-AAGAATGGGTCCTATA
1 TTTTTTTTTGAAGATTTACCAATCTACATTATTATTGGAGAGAGAAAAGAA-AATACGTCCTATA
* * * *
57129 GATAGTGTTTTCATTGATCTAGCAGAGAAAGTACGCCCTATAAGACGTGTTTTTTTGAAGATTTA
65 GAGAGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTATAAGACGCGTTTTTTTGAAGATTTA
* * * * *
57194 CCAATCTATATTGTTATTGGAGATAAAAAAGAAAATGTGTTCTATAGAGAACGTTTTCATTGATC
130 CCAATCTACATTGTTATTGAAGAGAAAAAAGAAAATGCGTTCTATAAAGAACGTTTTCATTGATC
*
57259 TAGTAGAGAAAGCACACCATATAAGA-CG-
195 TAG-AGAGAAAG-ACACCATGTAAGATCGT
* * * * *
57287 TATTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAGAAAAGAAAACATGTTCTATAG
1 TTTTTTTTTGAAGATTTACCAATCTACATTATTATTGGAGAGAGAAAAGAAAATACGTCCTATAG
** * * *** *
57352 AGAAAGTTTTTATTGATCTAGCAGAGAAAGCATGTTTTATAAGACGCGTTTTTTTGAAGATTTAT
66 AGAGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTATAAGACGCGTTTTTTTGAAGATTTAC
* * * * *
57417 CAATTTACATTGTTATTGAAGAGAAAAAAGAAAATGCGTCCTATAAAGAGCATTTTCATTTATCT
131 CAATCTACATTGTTATTGAAGAGAAAAAAGAAAATGCGTTCTATAAAGAACGTTTTCATTGATCT
* * * *
57482 A-ACAG--AGAAACCTTGTAAGATGGTTTT
196 AGAGAGAAAGACACCATGTAAGATCG---T
* * * *
57509 TTTTTTTTTGAAGATTTACAAATTTACATTATTATTGGAGAGAGAAAAGAAAATGCGTTCTATAG
1 TTTTTTTTTGAAGATTTACCAATCTACATTATTATTGGAGAGAGAAAAGAAAATACGTCCTATAG
* * * * ** * * *
57574 AGAGCGTTTTCATTAATCTAACAAAAAAAGCACGCATTGTAATACGCGTTTTTTTGAATATTTAC
66 AGAGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTATAAGACGCGTTTTTTTGAAGATTTAC
** * * ** *
57639 CAATCTACATTGTTATTGAAGAG--AAAAGAAAACACGTCCTATAAAAAATATTTTCATTTATCT
131 CAATCTACATTGTTATTGAAGAGAAAAAAGAAAATGCGTTCTATAAAGAACGTTTTCATTGATCT
* * * *
57702 AGCAGAGAAAGAGAAAGTATGCATTGTAATATGTGT
196 AG-AGAG-AA-AG--A-CA-CCA-TGTAAGAT-CGT
*
57738 TTTTTTTTTGAAGATTTACCAATCTATATTATTATTGGAGAGAGAAAAGAAAAT
1 TTTTTTTTTGAAGATTTACCAATCTACATTATTATTGGAGAGAGAAAAGAAAAT
57792 GTATCCTACA
Statistics
Matches: 600, Mismatches: 100, Indels: 49
0.80 0.13 0.07
Matches are distributed among these distances:
217 10 0.02
218 3 0.00
220 72 0.12
222 266 0.44
223 44 0.07
224 42 0.07
225 4 0.01
226 63 0.10
228 34 0.06
229 53 0.09
230 1 0.00
231 7 0.01
232 1 0.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (222 bp):
TTTTTTTTTGAAGATTTACCAATCTACATTATTATTGGAGAGAGAAAAGAAAATACGTCCTATAG
AGAGCGTTTTCATTGATCTAGCAGAGAAAGCACGCCCTATAAGACGCGTTTTTTTGAAGATTTAC
CAATCTACATTGTTATTGAAGAGAAAAAAGAAAATGCGTTCTATAAAGAACGTTTTCATTGATCT
AGAGAGAAAGACACCATGTAAGATCGT
Found at i:57546 original size:333 final size:328
Alignment explanation
Indices: 56838--57712 Score: 912
Period size: 333 Copynumber: 2.6 Consensus size: 328
56828 GAACGCACTG
* ** *
56838 GTTTTTTTTTGAAAATTTACCAATCTACATTGTTATTAAAGAGAGAAAAGAAAATGCGTCCTATA
1 GTTTTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAGAAAAGAAAATGCGTTCTATA
* * *
56903 AAGAGCGTTTTCATTGATCTAGTAGAGAAAGCATGTCC-TGTAAGACACGTTTTTTTTTTGAAGA
66 GAGAGCGTTTTCATTGATCTAGTAGAGAAAGCA--CCCATGTAAG--ACG-TATTTTTTTGAAGA
* * * *
56967 TTTAACAATTTACATTGTTATT-AGAGAGAGAAA-AAAA-ATGCGTC-ATACAAATAGTGTTTTC
126 TTTACCAATCTACATTGTTATTGAGAGAGA-AAAGAAAACATG-TTCTATA-AAA-AGTATTTTC
* ** * *
57028 ATTGATCTAGAAGAGAAAATACGCCCTGTAAGATGCGTTTTTTTTTTTGAAGATTTACCAATTTA
187 ATTGATCTAGCAGAGAAAGCACGCCCTATAAGACGCG---TTTTTTTTGAAGATTTACCAATTTA
* * * ** *
57093 CATTATTATTAGAGAGAAAAAAGAATGGGTCCTATAGATAGTGTTTTCATTGATCTAGCAGAGAA
249 CATTATTATTAGAGAGAAAAAAGAATGCGTCCTATAAAGAGCATTTTCATTGATCTAACAGAGAA
57158 AGTACGCCCTATAAGAC
314 AG-AC-CCCTATAAGAC
* * * * *
57175 GTGTTTTTTTGAAGATTTACCAATCTATATTGTTATTGGAGATAAAAAAGAAAATGTGTTCTATA
1 GTTTTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAGAAAAGAAAATGCGTTCTATA
* *
57240 GAGAACGTTTTCATTGATCTAGTAGAGAAAGCACACCATATAAGACGTATTTTTTTGAAGATTTA
66 GAGAGCGTTTTCATTGATCTAGTAGAGAAAGCAC-CCATGTAAGACGTATTTTTTTGAAGATTTA
57305 CCAATCTACATTGTTATTGGAGAGAGAAAAGAAAACATGTTCTATAGAGAAAGT-TTTT-ATTGA
130 CCAATCTACATTGTTATT-GAGAGAGAAAAGAAAACATGTTCTATA-A-AAAGTATTTTCATTGA
* *** * *
57368 TCTAGCAGAGAAAGCATGTTTTATAAGACGCG-TTTTTTTGAAGATTTATCAATTTACATTGTTA
192 TCTAGCAGAGAAAGCACGCCCTATAAGACGCGTTTTTTTTGAAGATTTACCAATTTACATTATTA
*
57432 TT-GAAGAGAAAAAAGAAAATGCGTCCTATAAAGAGCATTTTCATTTATCTAACAGAG-AA-A-C
257 TTAG-AGAGAAAAAAG--AATGCGTCCTATAAAGAGCATTTTCATTGATCTAACAGAGAAAGACC
* * *
57493 CTTGTAAGATG
319 CCTATAAGA-C
* * *
57504 GTTTTTTTTTTTTTGAAGATTTACAAATTTACATTATTATTGGAGAGAGAAAAGAAAATGCGTTC
1 G----TTTTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAGAAAAGAAAATGCGTTC
* ** * * * * ** *
57569 TATAGAGAGCGTTTTCATTAATCTAACAAAAAAAGCACGCATTGTAATACGCGTTTTTTTGAATA
62 TATAGAGAGCGTTTTCATTGATCTAGTAGAGAAAGCACCCA-TGTAAGACGTATTTTTTTGAAGA
* * * *
57634 TTTACCAATCTACATTGTTATTGA-AGAGAAAAGAAAACACGTCCTATAAAAAATATTTTCATTT
126 TTTACCAATCTACATTGTTATTGAGAGAGAAAAGAAAACATGTTCTATAAAAAGTATTTTCATTG
57698 ATCTAGCAGAGAAAG
191 ATCTAGCAGAGAAAG
57713 AGAAAGTATG
Statistics
Matches: 456, Mismatches: 63, Indels: 44
0.81 0.11 0.08
Matches are distributed among these distances:
328 8 0.02
329 5 0.01
330 7 0.02
331 83 0.18
332 6 0.01
333 157 0.34
334 33 0.07
335 34 0.07
336 19 0.04
337 102 0.22
338 2 0.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (328 bp):
GTTTTTTTTTGAAGATTTACCAATCTACATTGTTATTGGAGAGAGAAAAGAAAATGCGTTCTATA
GAGAGCGTTTTCATTGATCTAGTAGAGAAAGCACCCATGTAAGACGTATTTTTTTGAAGATTTAC
CAATCTACATTGTTATTGAGAGAGAAAAGAAAACATGTTCTATAAAAAGTATTTTCATTGATCTA
GCAGAGAAAGCACGCCCTATAAGACGCGTTTTTTTTGAAGATTTACCAATTTACATTATTATTAG
AGAGAAAAAAGAATGCGTCCTATAAAGAGCATTTTCATTGATCTAACAGAGAAAGACCCCTATAA
GAC
Found at i:60731 original size:14 final size:13
Alignment explanation
Indices: 60702--60729 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
60692 CAAATAAAAA
60702 TTAAAAATAATAT
1 TTAAAAATAATAT
60715 TTAAAAATAATAT
1 TTAAAAATAATAT
60728 TT
1 TT
60730 TAGTGAGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
TTAAAAATAATAT
Found at i:63955 original size:11 final size:11
Alignment explanation
Indices: 63939--63986 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
63929 TATAAGATTT
63939 AATTTATTTTA
1 AATTTATTTTA
*
63950 AATTTAAATTTA
1 AATTT-ATTTTA
* *
63962 AATTAAGTTTA
1 AATTTATTTTA
63973 AATTTACTTTTA
1 AATTTA-TTTTA
63985 AA
1 AA
63987 ATTAAAATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
11 15 0.50
12 15 0.50
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (11 bp):
AATTTATTTTA
Found at i:63957 original size:6 final size:6
Alignment explanation
Indices: 63918--64009 Score: 61
Period size: 6 Copynumber: 16.0 Consensus size: 6
63908 TAAATTCCTT
*
63918 TTTAAA TTT--A TTATAAGA TTT-AA TTT-AT TTTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TT-TAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* ** * * *
63964 -TTAAG TTTAAA TTTACT TTTAAA ATTAAA ATT-AT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
64010 AAGTCTCATT
Statistics
Matches: 67, Mismatches: 12, Indels: 14
0.72 0.13 0.15
Matches are distributed among these distances:
4 3 0.04
5 16 0.24
6 44 0.66
7 1 0.01
8 3 0.04
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (6 bp):
TTTAAA
Found at i:63984 original size:23 final size:24
Alignment explanation
Indices: 63946--64010 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 24
63936 TTTAATTTAT
63946 TTTAAATTTAAATTT-AAATTAAG
1 TTTAAATTTAAATTTAAAATTAAG
** *
63969 TTTAAATTTACTTTTAAAATTAAA
1 TTTAAATTTAAATTTAAAATTAAG
* *
63993 ATT-ATTTTAAATTTAAAA
1 TTTAAATTTAAATTTAAAA
64011 AGTCTCATTA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
23 25 0.74
24 9 0.26
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
TTTAAATTTAAATTTAAAATTAAG
Found at i:64010 original size:17 final size:17
Alignment explanation
Indices: 63918--64009 Score: 105
Period size: 17 Copynumber: 5.4 Consensus size: 17
63908 TAAATTCCTT
*
63918 TTTAAATTTATTATAAGA
1 TTTAAATTTATTTTAA-A
63936 TTT-AATTTATTTTAAA
1 TTTAAATTTATTTTAAA
** *
63952 TTTAAATTTAAATTAAG
1 TTTAAATTTATTTTAAA
63969 TTTAAATTTACTTTTAAA
1 TTTAAATTTA-TTTTAAA
* *
63987 ATTAAAATTATTTTAAA
1 TTTAAATTTATTTTAAA
64004 TTTAAA
1 TTTAAA
64010 AAGTCTCATT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
16 4 0.06
17 43 0.69
18 15 0.24
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:65194 original size:65 final size:65
Alignment explanation
Indices: 65087--65215 Score: 195
Period size: 65 Copynumber: 2.0 Consensus size: 65
65077 TGTACCAGCA
* *
65087 GGTGACGGACGTCGAAGCATGGTGGTCACGCACGTCGACCGACGAGGCACGTGCAGCGGAGCCAT
1 GGTGACGGACATCGAAGCATGGAGGTCACGCACGTCGACCGACGAGGCACGTGCAGCGGAGCCAT
* * * * *
65152 GGTGACGGACATTGAAGCATGGAGGTCATGCTCGTCGGCCGACGAGGCGCGTGCAGCGGAGCCA
1 GGTGACGGACATCGAAGCATGGAGGTCACGCACGTCGACCGACGAGGCACGTGCAGCGGAGCCA
65216 CGATGGCCGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.21, C:0.26, G:0.40, T:0.13
Consensus pattern (65 bp):
GGTGACGGACATCGAAGCATGGAGGTCACGCACGTCGACCGACGAGGCACGTGCAGCGGAGCCAT
Found at i:65874 original size:29 final size:29
Alignment explanation
Indices: 65832--66359 Score: 332
Period size: 29 Copynumber: 18.0 Consensus size: 29
65822 TCGAAAATTC
** *
65832 CAAAAATTTAATTTTCACCCTCGAACTTT
1 CAAAAATTCCATTTTTACCCTCGAACTTT
* **
65861 CGAAAATTCCATTTTTGA-TATCGAAACTTT
1 CAAAAATTCCATTTTT-ACCCTCG-AACTTT
* * * *
65891 CAAAACTTCAATTTTTACCCCCGAACTTC
1 CAAAAATTCCATTTTTACCCTCGAACTTT
* * *
65920 CAAAAATTCCGTTTTTACTCTCGAACTTC
1 CAAAAATTCCATTTTTACCCTCGAACTTT
* *
65949 CAAAAATTCCATTTTCGACCC-CGAAATTT
1 CAAAAATTCCATTTT-TACCCTCGAACTTT
*
65978 CCAAAAATTCCATTTTTACCCCCGAAC-TT
1 -CAAAAATTCCATTTTTACCCTCGAACTTT
* * * *
66007 CAAAAAATTCCATTTTCAACCTCGAAACATC
1 C-AAAAATTCCATTTTTACCCTCG-AACTTT
* * *
66038 CAAAAATCCCATTTTTGACCCCCAAAAC-TT
1 CAAAAATTCCATTTTT-ACCCTC-GAACTTT
* * * *
66068 CTAAAAATTCTATTTTAACCC-CTAAACTTC
1 C-AAAAATTCCATTTTTACCCTC-GAACTTT
* * **
66098 CAAAATTTCCATTTTGACCCTAAAAC-TT
1 CAAAAATTCCATTTTTACCCTCGAACTTT
*
66126 CCAAAATTCCATTTTTACCCTC-AA-TCTT
1 CAAAAATTCCATTTTTACCCTCGAACT-TT
* **
66154 CTAAAAATTCCATTTTCGA-CCTCGAAACTAC
1 C-AAAAATTCCATTTT-TACCCTCG-AACTTT
* *
66185 CAAAAATTACA-TTTTACCCTCGAAC-CT
1 CAAAAATTCCATTTTTACCCTCGAACTTT
* *
66212 CTAAAATTTCCATTTTTGACCC-CAAAACTTT
1 C-AAAAATTCCATTTTT-ACCCTC-GAACTTT
*
66243 CAAAAATTACCA-TTTTACCCTCGAA-TGTC
1 CAAAAATT-CCATTTTTACCCTCGAACT-TT
*
66272 CAAAAATTCCATTTTTAACCC-CAAAACTTT
1 CAAAAATTCCATTTTT-ACCCTC-GAACTTT
* **
66302 CGAAAATTCCATTTTTACCCTCGAA-TAG
1 CAAAAATTCCATTTTTACCCTCGAACTTT
*
66330 CTAAAAATTCCATCTTTTAACCTCGAACTT
1 C-AAAAATTCCAT-TTTTACCCTCGAACTT
66360 CCCCAAAATT
Statistics
Matches: 388, Mismatches: 73, Indels: 74
0.73 0.14 0.14
Matches are distributed among these distances:
27 3 0.01
28 41 0.11
29 181 0.47
30 131 0.34
31 31 0.08
32 1 0.00
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.34
Consensus pattern (29 bp):
CAAAAATTCCATTTTTACCCTCGAACTTT
Found at i:65904 original size:59 final size:58
Alignment explanation
Indices: 65822--66288 Score: 233
Period size: 59 Copynumber: 7.9 Consensus size: 58
65812 CCTGGAGGGC
* * *
65822 TCGAAAATTCCAAAAATTTAATTTTCACCCTCGAACTTTCGAAAATTCCATTTTTGA-TA
1 TCGAAACTTCCAAAAATTCAATTTTCACCC-CGAACTTTCAAAAATTCCATTTTT-ACTA
* * * * * *
65881 TCGAAACTTTCAAAACTTCAATTTTTACCCCCGAACTTCCAAAAATTCCGTTTTTACTC
1 TCGAAACTTCCAAAAATTCAATTTTCA-CCCCGAACTTTCAAAAATTCCATTTTTACTA
* * **
65940 TCG-AACTTCCAAAAATTCCATTTTCGACCCCGAAATTTCCAAAAATTCCATTTTTACCC
1 TCGAAACTTCCAAAAATTCAATTTTC-ACCCCGAACTTT-CAAAAATTCCATTTTTACTA
* * * * * * * **
65999 CCG-AACTTCAAAAAATTCCATTTTCAACCTCGAAACATCCAAAAATCCCATTTTTGACCC
1 TCGAAACTTCCAAAAATTCAATTTTC-ACCCCG-AACTTTCAAAAATTCCATTTTT-ACTA
* * * * * * * * * **
66059 CCAAAACTTCTAAAAATTCTATTTTAACCCCTAAACTTCCAAAATTTCCATTTTGACCC
1 TCGAAACTTCCAAAAATTCAATTTTCACCCC-GAACTTTCAAAAATTCCATTTTTACTA
* * * * *
66118 T-AAAACTTCC-AAAATTCCATTTTTACCCTC-AA-TCTTCTAAAAATTCCATTTTCGAC-C
1 TCGAAACTTCCAAAAATTCAATTTTCACCC-CGAACT-TTC-AAAAATTCCATTTT-TACTA
* * * *
66175 TCGAAACTACCAAAAATT-ACATTTT-ACCCTCGAAC-CTCTAAAATTTCCATTTTTGAC-C
1 TCGAAACTTCCAAAAATTCA-ATTTTCACCC-CGAACTTTC-AAAAATTCCATTTTT-ACTA
* * * * *
66233 CCAAAACTTTCAAAAATTACCATTTT-ACCCTCGAA-TGTCCAAAAATTCCATTTTTA
1 TCGAAACTTCCAAAAATT-CAATTTTCACCC-CGAACT-TTCAAAAATTCCATTTTTA
66289 ACCCCAAAAC
Statistics
Matches: 331, Mismatches: 55, Indels: 45
0.77 0.13 0.10
Matches are distributed among these distances:
55 1 0.00
56 4 0.01
57 31 0.09
58 87 0.26
59 154 0.47
60 35 0.11
61 19 0.06
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.34
Consensus pattern (58 bp):
TCGAAACTTCCAAAAATTCAATTTTCACCCCGAACTTTCAAAAATTCCATTTTTACTA
Found at i:65983 original size:88 final size:88
Alignment explanation
Indices: 65829--66361 Score: 417
Period size: 88 Copynumber: 6.0 Consensus size: 88
65819 GGCTCGAAAA
** * * * ** * *
65829 TTCCAAAAATTTAATTTTCACCCTCGAACTTTCGAAAATTCCATTTTTGATATCGAAACTTT-CA
1 TTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATTCCATTTTTGA-CCCCAAAATTTCCA
* *
65893 AAACTTCAATTTTTACCCCCGAAC
65 AAAATTCCATTTTTACCCCCGAAC
* * * *
65917 TTCCAAAAATTCCGTTTTTACTCTCGAACTTCCAAAAATTCCATTTTCGACCCCGAAATTTCCAA
1 TTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCCCAAAATTTCCAA
65982 AAATTCCATTTTTACCCCCGAAC
66 AAATTCCATTTTTACCCCCGAAC
* * * * * * *
66005 TTCAAAAAATTCCATTTTCAACCTCGAAACATCCAAAAATCCCATTTTTGACCCCCAAAACTTCT
1 TTCCAAAAATTCCATTTTTACCCTCG-AACTTCCAAAAATTCCATTTTTGA-CCCCAAAATTTCC
* * **
66070 AAAAATTCTATTTTAACCCCTAAAC
64 AAAAATTCCATTTTTACCCCCGAAC
* * ** *
66095 TTCCAAAATTTCCATTTTGACCCTAAAACTTCC-AAAATTCCATTTTT-ACCCTC--AATCTTCT
1 TTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCC-CAAAAT-TTCC
* *
66156 AAAAATTCCATTTTCGA-CCTCGAAAC
64 AAAAATTCCATTTT-TACCCCCG-AAC
* * * * *
66182 TACCAAAAATTACA-TTTTACCCTCGAACCTCTAAAATTTCCATTTTTGACCCCAAAACTTT-CA
1 TTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCCCAAAA-TTTCCA
*
66245 AAAATTACCA-TTTTACCCTCGAA-
65 AAAATT-CCATTTTTACCCCCGAAC
* * * * **
66268 TGTCCAAAAATTCCATTTTTAACCC-CAAAACTTTCGAAAATTCCATTTTT-ACCCTC-GAATAG
1 T-TCCAAAAATTCCATTTTT-ACCCTC-GAACTTCCAAAAATTCCATTTTTGACCC-CAAAATTT
* * *
66330 CTAAAAATTCCATCTTTTAACCTCGAAC
62 CCAAAAATTCCAT-TTTTACCCCCGAAC
66358 TTCC
1 TTCC
66362 CCAAAATTAC
Statistics
Matches: 354, Mismatches: 68, Indels: 45
0.76 0.15 0.10
Matches are distributed among these distances:
85 2 0.01
86 36 0.10
87 55 0.16
88 137 0.39
89 71 0.20
90 53 0.15
ACGTcount: A:0.34, C:0.28, G:0.04, T:0.34
Consensus pattern (88 bp):
TTCCAAAAATTCCATTTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCCCAAAATTTCCAA
AAATTCCATTTTTACCCCCGAAC
Found at i:66293 original size:59 final size:58
Alignment explanation
Indices: 65884--66351 Score: 332
Period size: 59 Copynumber: 7.9 Consensus size: 58
65874 TTTGATATCG
* * * * *
65884 AAACTTTCAAAACTTCAATTTTTACCCCCGAACT-TCCAAAAATTCCGTTTTT-ACTCTC-
1 AAACTTTCAAAAATTCCA-TTTTACCCTCGAA-TGTCCAAAAATTCCATTTTTAAC-CCCA
* * * *
65942 GAACTTCCAAAAATTCCATTTTCGACCC-CGAAATTTCCAAAAATTCCATTTTT-ACCCCC
1 AAACTTTCAAAAATTCCATTTT--ACCCTCG-AATGTCCAAAAATTCCATTTTTAACCCCA
* * ** * *
66001 GAAC-TTCAAAAAATTCCATTTTCAACCTCGAAACATCCAAAAATCCCATTTTTGACCCCCA
1 AAACTTTC-AAAAATTCCATTTT-ACCCTCG-AATGTCCAAAAATTCCATTTTT-AACCCCA
* * * * *
66062 AAAC-TTCTAAAAATTCTATTTTAACCC-CTAAACT-TCCAAAATTTCCA-TTTTGACCCTA
1 AAACTTTC-AAAAATTCCATTTT-ACCCTC-GAA-TGTCCAAAAATTCCATTTTTAACCCCA
* * * ** * *
66120 AAAC-TTCCAAAATTCCATTTTTACCCTC-AATCTTCTAAAAATTCCATTTTCGACCTCG
1 AAACTTTCAAAAATTCCA-TTTTACCCTCGAAT-GTCCAAAAATTCCATTTTTAACCCCA
** * ** * * *
66178 AAACTACCAAAAATTACATTTTACCCTCGAACCTCTAAAATTTCCATTTTTGACCCCA
1 AAACTTTCAAAAATTCCATTTTACCCTCGAATGTCCAAAAATTCCATTTTTAACCCCA
66236 AAACTTTCAAAAATTACCATTTTACCCTCGAATGTCCAAAAATTCCATTTTTAACCCCA
1 AAACTTTCAAAAATT-CCATTTTACCCTCGAATGTCCAAAAATTCCATTTTTAACCCCA
* *
66295 AAACTTTCGAAAATTCCATTTTTACCCTCGAATAG-CTAAAAATTCCATCTTTTAACC
1 AAACTTTCAAAAATTCCA-TTTTACCCTCGAAT-GTCCAAAAATTCCAT-TTTTAACC
66352 TCGAACTTCC
Statistics
Matches: 334, Mismatches: 54, Indels: 42
0.78 0.13 0.10
Matches are distributed among these distances:
55 1 0.00
56 2 0.01
57 27 0.08
58 98 0.29
59 157 0.47
60 23 0.07
61 26 0.08
ACGTcount: A:0.35, C:0.29, G:0.04, T:0.33
Consensus pattern (58 bp):
AAACTTTCAAAAATTCCATTTTACCCTCGAATGTCCAAAAATTCCATTTTTAACCCCA
Found at i:66784 original size:96 final size:95
Alignment explanation
Indices: 66644--66826 Score: 255
Period size: 96 Copynumber: 1.9 Consensus size: 95
66634 AAGACTTTAA
* **
66644 AATCGAGGTAATATTTTTTATTTCGAGTTTCGAAAATTTGTGCCTTAACTTACTAGGTGCAATTT
1 AATCGAGGCAATATTTTTTATTTCGAGTTTCGAAAATTTGTGCCTTAACTTACTAGGTGCAACCT
66709 TTCTTCAAATCAAAATAATCGAATACCCTT
66 TTCTTCAAATCAAAATAATCGAATACCCTT
*
66739 AATCGAGGCAATGTTTCTTTATCTTCGA--TTCTG-AAATATTGTGCCTTAACTTACTAGGTGCA
1 AATCGAGGCAATATTT-TTTAT-TTCGAGTTTC-GAAAAT-TTGTGCCTTAACTTACTAGGTGCA
* *
66801 ACCTTTCTTCAAATCGAGATAATCGA
62 ACCTTTCTTCAAATCAAAATAATCGA
66827 CCAAAATTTT
Statistics
Matches: 78, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
95 21 0.27
96 52 0.67
97 5 0.06
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (95 bp):
AATCGAGGCAATATTTTTTATTTCGAGTTTCGAAAATTTGTGCCTTAACTTACTAGGTGCAACCT
TTCTTCAAATCAAAATAATCGAATACCCTT
Found at i:67281 original size:23 final size:22
Alignment explanation
Indices: 67250--67319 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
67240 GCTCTCCGTT
*
67250 ATTTAGCATGTATCGTGCTCTCC
1 ATTTAGCATAT-TCGTGCTCTCC
* *
67273 GTTTAGCATATTTGTGCTCTCC
1 ATTTAGCATATTCGTGCTCTCC
** *
67295 ATTTAGCACCTTGGTGCTCTCC
1 ATTTAGCATATTCGTGCTCTCC
67317 ATT
1 ATT
67320 CATTAGTACA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
22 31 0.77
23 9 0.22
ACGTcount: A:0.16, C:0.26, G:0.17, T:0.41
Consensus pattern (22 bp):
ATTTAGCATATTCGTGCTCTCC
Found at i:70797 original size:4 final size:4
Alignment explanation
Indices: 70788--70832 Score: 63
Period size: 4 Copynumber: 11.0 Consensus size: 4
70778 TTTTACGATT
* *
70788 TAAA TAAA TAAA TAAAA TAAA TATA TAAA TACA TAAA TAAA TAAA
1 TAAA TAAA TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
70833 ATATTTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
4 32 0.89
5 4 0.11
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:70818 original size:25 final size:23
Alignment explanation
Indices: 70788--70836 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 23
70778 TTTTACGATT
70788 TAAATAAATAAATAAAATAAATATA
1 TAAATAAATAAAT-AAATAAA-ATA
*
70813 TAAATACATAAATAAATAAAATA
1 TAAATAAATAAATAAATAAAATA
70836 T
1 T
70837 TTTTAATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.17
24 7 0.30
25 12 0.52
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (23 bp):
TAAATAAATAAATAAATAAAATA
Found at i:70917 original size:29 final size:28
Alignment explanation
Indices: 70880--70935 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
70870 ATCTTTCTCC
*
70880 AAAAACAATCTATATCCATAATTATTTT
1 AAAAACAATATATATCCATAATTATTTT
* *
70908 AAAAATCAATATATATTCTTAATTATTT
1 AAAAA-CAATATATATCCATAATTATTT
70936 ATTAAAATAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (28 bp):
AAAAACAATATATATCCATAATTATTTT
Found at i:71853 original size:19 final size:19
Alignment explanation
Indices: 71831--71871 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
71821 CAAAACGACG
71831 TAGTTTT-ATCTTTTAACTT
1 TAGTTTTGA-CTTTTAACTT
71850 TAGTTTTGACTTTTAACTT
1 TAGTTTTGACTTTTAACTT
71869 TAG
1 TAG
71872 AAAAGGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 20 0.95
20 1 0.05
ACGTcount: A:0.22, C:0.10, G:0.10, T:0.59
Consensus pattern (19 bp):
TAGTTTTGACTTTTAACTT
Found at i:73850 original size:4 final size:4
Alignment explanation
Indices: 73823--73881 Score: 50
Period size: 4 Copynumber: 14.8 Consensus size: 4
73813 TTCAGTCCCT
* * *
73823 TTTA TTTT TTGTA TTTA TTCA TTTA TTTTA GTT- TTTA TTTA TTTA TTT-
1 TTTA TTTA TT-TA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA
*
73871 GTTA TTTA TTT
1 TTTA TTTA TTT
73882 TTATCTCATT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
3 4 0.09
4 32 0.74
5 7 0.16
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:73875 original size:11 final size:10
Alignment explanation
Indices: 73823--73899 Score: 52
Period size: 11 Copynumber: 7.3 Consensus size: 10
73813 TTCAGTCCCT
73823 TTTATTTTT-
1 TTTATTTTTA
*
73832 TGTATTTATTCA
1 TTTATTT-TT-A
73844 TTTA-TTTTA
1 TTTATTTTTA
73853 GTTT-TTATTTA
1 -TTTATT-TTTA
73864 TTTATTTGTTA
1 TTTATTT-TTA
73875 TTTATTTTTA
1 TTTATTTTTA
*
73885 TCTCATTTTATA
1 T-TTATTTT-TA
73897 TTT
1 TTT
73900 TTCCTTTTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 18
0.71 0.05 0.24
Matches are distributed among these distances:
9 7 0.13
10 16 0.30
11 25 0.46
12 6 0.11
ACGTcount: A:0.19, C:0.04, G:0.04, T:0.73
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:73884 original size:32 final size:33
Alignment explanation
Indices: 73822--73882 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
73812 ATTCAGTCCC
*
73822 TTTTATTTTTTGTATTTATTCATTTATTTTAGT
1 TTTTATTTATTGTATTTATTCATTTATTTTAGT
*
73855 TTTTATTTATT-TATTTGTT-ATTTATTTT
1 TTTTATTTATTGTATTTATTCATTTATTTT
73883 TATCTCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 9 0.35
32 7 0.27
33 10 0.38
ACGTcount: A:0.18, C:0.02, G:0.05, T:0.75
Consensus pattern (33 bp):
TTTTATTTATTGTATTTATTCATTTATTTTAGT
Found at i:73899 original size:37 final size:36
Alignment explanation
Indices: 73823--73899 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 36
73813 TTCAGTCCCT
* *
73823 TTTATTTTTTGTATTTATTCATTTATTTTAGTTTTTA
1 TTTATTTTTTGTATTTATT-ATTTATCTCAGTTTTTA
73860 TTTATTTATTTGTTATTTATT-TTTATCTCA-TTTTATA
1 TTTATTT-TTTG-TATTTATTATTTATCTCAGTTTT-TA
73897 TTT
1 TTT
73900 TTCCTTTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
36 4 0.11
37 19 0.54
38 4 0.11
39 8 0.23
ACGTcount: A:0.19, C:0.04, G:0.04, T:0.73
Consensus pattern (36 bp):
TTTATTTTTTGTATTTATTATTTATCTCAGTTTTTA
Found at i:80083 original size:21 final size:21
Alignment explanation
Indices: 80059--80110 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
80049 AGAATTTTAT
80059 CGATACAAGTGACAATTATAC
1 CGATACAAGTGACAATTATAC
* *
80080 CGATACAAGTGACTATTCTAC
1 CGATACAAGTGACAATTATAC
* *
80101 TGAAACAAGT
1 CGATACAAGT
80111 CTTACTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (21 bp):
CGATACAAGTGACAATTATAC
Found at i:80530 original size:16 final size:16
Alignment explanation
Indices: 80509--80541 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
80499 ATATTATAAT
80509 ACATAACAAGCTTCAA
1 ACATAACAAGCTTCAA
*
80525 ACATAACAAGTTTCAA
1 ACATAACAAGCTTCAA
80541 A
1 A
80542 AATCATACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.21, G:0.06, T:0.21
Consensus pattern (16 bp):
ACATAACAAGCTTCAA
Found at i:80873 original size:50 final size:50
Alignment explanation
Indices: 80803--80971 Score: 169
Period size: 50 Copynumber: 3.3 Consensus size: 50
80793 TGACTCAAAT
* * * * *
80803 GAGCCGAGATAGAATATCGCTCATACAAGCTAGACGAAATTATACTCTTAC
1 GAGCC-AGATAGAATTTCGCTCATACAAGCCAAACAAAATTACACTCTTAC
* * * *
80854 GAGCTAGATAGAATTTCGCTCTTACGAGCCAAACAAAATTACCCTCTTAC
1 GAGCCAGATAGAATTTCGCTCATACAAGCCAAACAAAATTACACTCTTAC
* ** *
80904 GAGCCAGACT-GAATTTCGCCCCCACGAGCCAAACAAAATTACACTCTTAC
1 GAGCCAGA-TAGAATTTCGCTCATACAAGCCAAACAAAATTACACTCTTAC
*
80954 AAGCCAGAATCAGAATTT
1 GAGCCAG-AT-AGAATTT
80972 TCTCGCCTTC
Statistics
Matches: 99, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
50 87 0.88
51 6 0.06
52 6 0.06
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.22
Consensus pattern (50 bp):
GAGCCAGATAGAATTTCGCTCATACAAGCCAAACAAAATTACACTCTTAC
Found at i:80893 original size:25 final size:25
Alignment explanation
Indices: 80847--80959 Score: 91
Period size: 25 Copynumber: 4.5 Consensus size: 25
80837 CGAAATTATA
* * * * *
80847 CTCTTACGAGCTAGATAGAATTTCG
1 CTCTTACGAGCCAAACAAAATTACG
*
80872 CTCTTACGAGCCAAACAAAATTACC
1 CTCTTACGAGCCAAACAAAATTACG
* ** *
80897 CTCTTACGAGCCAGACTGAATTTCG
1 CTCTTACGAGCCAAACAAAATTACG
* ** *
80922 CCCCCACGAGCCAAACAAAATTACA
1 CTCTTACGAGCCAAACAAAATTACG
*
80947 CTCTTACAAGCCA
1 CTCTTACGAGCCA
80960 GAATCAGAAT
Statistics
Matches: 65, Mismatches: 23, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.34, C:0.31, G:0.13, T:0.22
Consensus pattern (25 bp):
CTCTTACGAGCCAAACAAAATTACG
Found at i:84123 original size:29 final size:29
Alignment explanation
Indices: 84110--84170 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
84100 GAAAATTTAC
84110 TTTTTAGATGTTTGAGGGTAAAATGGTAA
1 TTTTTAGATGTTTGAGGGTAAAATGGTAA
*
84139 TTTTTAGATGTTTGAGGGTAAATTGGTAA
1 TTTTTAGATGTTTGAGGGTAAAATGGTAA
84168 TTT
1 TTT
84171 CTAAAAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (29 bp):
TTTTTAGATGTTTGAGGGTAAAATGGTAA
Found at i:84335 original size:30 final size:30
Alignment explanation
Indices: 84218--84341 Score: 196
Period size: 30 Copynumber: 4.1 Consensus size: 30
84208 TTCGAGGGCA
*
84218 AAAATGTAATTTTGGAAAAGTTTAGAGGTT
1 AAAATGTAATTTTGGAAAAGTTTAGGGGTT
*
84248 AAAATGCAATTTTGGAAAAGTTTAGGGGTT
1 AAAATGTAATTTTGGAAAAGTTTAGGGGTT
84278 AAAATGTAATTTTGGAAAAGTTTAGGGGTT
1 AAAATGTAATTTTGGAAAAGTTTAGGGGTT
*
84308 AAAATGTAATTTT-AAAAGAGTTTAGGGGTCT
1 AAAATGTAATTTTGGAAA-AGTTTAGGGGT-T
84339 AAA
1 AAA
84342 TATTATTTCT
Statistics
Matches: 88, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
29 3 0.03
30 81 0.92
31 4 0.05
ACGTcount: A:0.40, C:0.02, G:0.24, T:0.35
Consensus pattern (30 bp):
AAAATGTAATTTTGGAAAAGTTTAGGGGTT
Found at i:85397 original size:15 final size:15
Alignment explanation
Indices: 85377--85417 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
85367 CTTTTATTAT
*
85377 TTTATTTATTAAGTA
1 TTTATTTAATAAGTA
**
85392 TTTATTTAATATTTA
1 TTTATTTAATAAGTA
85407 TTTATTTAATA
1 TTTATTTAATA
85418 GTAATTTCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (15 bp):
TTTATTTAATAAGTA
Found at i:85409 original size:11 final size:12
Alignment explanation
Indices: 85379--85410 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
85369 TTTATTATTT
85379 TATTTA-TTAAG
1 TATTTATTTAAG
85390 TATTTATTTAA-
1 TATTTATTTAAG
85401 TATTTATTTA
1 TATTTATTTA
85411 TTTAATAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (12 bp):
TATTTATTTAAG
Found at i:86054 original size:23 final size:22
Alignment explanation
Indices: 86014--86079 Score: 70
Period size: 17 Copynumber: 3.2 Consensus size: 22
86004 TGGACATTAG
*
86014 TAAATTTAAATAAGTTTAAACT
1 TAAATTTAAATAAATTTAAACT
86036 TAAATTTACAATAAATTTAAA--
1 TAAATTTA-AATAAATTTAAACT
*
86057 T---TTGAAATAAATTTAAACT
1 TAAATTTAAATAAATTTAAACT
86076 TAAA
1 TAAA
86080 ATAAATTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
17 12 0.33
18 3 0.08
19 1 0.03
21 1 0.03
22 8 0.22
23 11 0.31
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (22 bp):
TAAATTTAAATAAATTTAAACT
Found at i:86055 original size:17 final size:16
Alignment explanation
Indices: 86030--86094 Score: 85
Period size: 17 Copynumber: 3.9 Consensus size: 16
86020 TAAATAAGTT
*
86030 TAAACTTAAATTTACAA
1 TAAATTTAAATTTA-AA
86047 TAAATTTAAATTTGAAA
1 TAAATTTAAATTT-AAA
*
86064 TAAATTTAAACTTAAAA
1 TAAATTTAAA-TTTAAA
86081 TAAATTTAAATTTA
1 TAAATTTAAATTTA
86095 TGTTTAGGTC
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
16 3 0.07
17 37 0.86
18 3 0.07
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.40
Consensus pattern (16 bp):
TAAATTTAAATTTAAA
Found at i:86056 original size:6 final size:6
Alignment explanation
Indices: 86014--86094 Score: 59
Period size: 6 Copynumber: 14.3 Consensus size: 6
86004 TGGACATTAG
* *
86014 TAAATT TAAA-- TAAGTT TAAACT TAAATT TACAA-- TAAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TA-AATT TAAATT TAAATT
* *
86059 TGAAA-- TAAATT TAAACT TAAA-A TAAATT TAAATT TA
1 T-AAATT TAAATT TAAATT TAAATT TAAATT TAAATT TA
86095 TGTTTAGGTC
Statistics
Matches: 59, Mismatches: 7, Indels: 18
0.70 0.08 0.21
Matches are distributed among these distances:
4 8 0.14
5 7 0.12
6 39 0.66
7 5 0.08
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (6 bp):
TAAATT
Found at i:86527 original size:39 final size:38
Alignment explanation
Indices: 86468--86898 Score: 306
Period size: 39 Copynumber: 11.1 Consensus size: 38
86458 TATTGCTTCA
* * * *
86468 AATGACTGCAATCTGTCCCAAGCTCGGGGTAAAAGATCG
1 AATGGCTG-AATCTGCCCCAAGCTCGGGGTAAGAGATTG
* * *
86507 AATGGCTGCAATTTGCCCCAAGCTCGAGATAAGAGATTGG
1 AATGGCTG-AATCTGCCCCAAGCTCGGGGTAAGAGATT-G
* * * *
86547 CTGATGG-TG-ATCTGCCCTAGGCTCGGGGTAAAAGATTG
1 --AATGGCTGAATCTGCCCCAAGCTCGGGGTAAGAGATTG
* * ** *
86585 AAAGACTGTAATCTATCCCAAGCTCAGGGTAAGAGATTGG
1 AATGGCTG-AATCTGCCCCAAGCTCGGGGTAAGAGATT-G
*
86625 CTGATGG-TG-ATCTGCCCCAAGCTCGGGGTAAGAGATTG
1 --AATGGCTGAATCTGCCCCAAGCTCGGGGTAAGAGATTG
* * *
86663 AATGACTGCAATCTGCCCCCAAGCTTGGGGTAAGAGATTT
1 AATGGCTG-AATCTG-CCCCAAGCTCGGGGTAAGAGATTG
* **
86703 ATTGATGG-TG-ATCTGCCCTAAGCTCGGGGTATA-AGATCC
1 A---ATGGCTGAATCTGCCCCAAGCTCGGGGTA-AGAGATTG
*
86742 AATGGCTATAATCTGCCCCAAGCTCGGGGTAAGAGATTG
1 AATGGCT-GAATCTGCCCCAAGCTCGGGGTAAGAGATTG
*
86781 ACTGATGG-TG-ATCTGCCTCAAGCTCGGGGTAAGAGATTG
1 A---ATGGCTGAATCTGCCCCAAGCTCGGGGTAAGAGATTG
* * *
86820 AATGGCTGCAATCTGTCCCATGCTCGGGGTAAAAGATTG
1 AATGGCTG-AATCTGCCCCAAGCTCGGGGTAAGAGATTG
* * * * * *
86859 ACTGGTTG-ATCTGCCACAAGCTCGAGGTAAAAGATCG
1 AATGGCTGAATCTGCCCCAAGCTCGGGGTAAGAGATTG
86896 AAT
1 AAT
86899 CTTCAATCTG
Statistics
Matches: 309, Mismatches: 56, Indels: 56
0.73 0.13 0.13
Matches are distributed among these distances:
36 13 0.04
37 33 0.11
38 3 0.01
39 209 0.68
40 31 0.10
41 5 0.02
42 12 0.04
43 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (38 bp):
AATGGCTGAATCTGCCCCAAGCTCGGGGTAAGAGATTG
Found at i:86607 original size:78 final size:78
Alignment explanation
Indices: 86478--86911 Score: 495
Period size: 78 Copynumber: 5.6 Consensus size: 78
86468 AATGACTGCA
* * * *
86478 ATCTGTCCC-AAGCTCGGGGTAAAAGATCGAATGGCTGCAATTTGCCCCAAGCTCGAGATAAGAG
1 ATCTG-CCCTAAGCTCGGGGTAAAAGATTGAATGGCTGCAATCTGCCCCAAGCTCGGGGTAAGAG
*
86542 ATTGGCTGATGGTG
65 ATTGACTGATGGTG
* * * * ** *
86556 ATCTGCCCTAGGCTCGGGGTAAAAGATTGAAAGACTGTAATCTATCCCAAGCTCAGGGTAAGAGA
1 ATCTGCCCTAAGCTCGGGGTAAAAGATTGAATGGCTGCAATCTGCCCCAAGCTCGGGGTAAGAGA
*
86621 TTGGCTGATGGTG
66 TTGACTGATGGTG
* * * *
86634 ATCTGCCCCAAGCTCGGGGTAAGAGATTGAATGACTGCAATCTGCCCCCAAGCTTGGGGTAAGAG
1 ATCTGCCCTAAGCTCGGGGTAAAAGATTGAATGGCTGCAATCTG-CCCCAAGCTCGGGGTAAGAG
* *
86699 ATTTATTGATGGTG
65 ATTGACTGATGGTG
* ** **
86713 ATCTGCCCTAAGCTCGGGGTATAAGATCCAATGGCTATAATCTGCCCCAAGCTCGGGGTAAGAGA
1 ATCTGCCCTAAGCTCGGGGTAAAAGATTGAATGGCTGCAATCTGCCCCAAGCTCGGGGTAAGAGA
86778 TTGACTGATGGTG
66 TTGACTGATGGTG
* * * *
86791 ATCTG-CCTCAAGCTCGGGGTAAGAGATTGAATGGCTGCAATCTGTCCCATGCTCGGGGTAAAAG
1 ATCTGCCCT-AAGCTCGGGGTAAAAGATTGAATGGCTGCAATCTGCCCCAAGCTCGGGGTAAGAG
*
86855 ATTGACTG--GTTG
65 ATTGACTGATGGTG
* * *
86867 ATCTGCCAC-AAGCTCGAGGTAAAAGATCGAAT--CTTCAATCTGCCC
1 ATCTGCC-CTAAGCTCGGGGTAAAAGATTGAATGGCTGCAATCTGCCC
86912 TTCTTGATTA
Statistics
Matches: 302, Mismatches: 49, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
74 11 0.04
76 28 0.09
77 7 0.02
78 192 0.64
79 64 0.21
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (78 bp):
ATCTGCCCTAAGCTCGGGGTAAAAGATTGAATGGCTGCAATCTGCCCCAAGCTCGGGGTAAGAGA
TTGACTGATGGTG
Found at i:86763 original size:157 final size:156
Alignment explanation
Indices: 86478--86894 Score: 543
Period size: 157 Copynumber: 2.7 Consensus size: 156
86468 AATGACTGCA
* * * * * *
86478 ATCTGTCCCAAGCTCGGGGTAAAAGATCGAATGGCTGCAATTTGCCCCAAGCTCGAGATAAGAGA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGAATGGCTGCAATCTGCCCCAAGCTCGGGGTAAGAGA
* * ** * *
86543 TTGGCTGATGGTGATCTGCCCTAGGCTCGGGGTAAAAGATTGAAAGACTGTAATCTATCCCAAGC
66 TTGACTGATGGTGATCTGCCCTAAGCTCGGGGTAAAAGATCCAAAGACTATAATCTACCCCAAGC
*
86608 TCAGGGTAAGAGATTGGCTGATGGTG
131 TCAGGGTAAGAGATTGACTGATGGTG
* *
86634 ATCTGCCCCAAGCTCGGGGTAAGAGATTGAATGACTGCAATCTGCCCCCAAGCTTGGGGTAAGAG
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGAATGGCTGCAATCTG-CCCCAAGCTCGGGGTAAGAG
* * * * * *
86699 ATTTATTGATGGTGATCTGCCCTAAGCTCGGGGTATAAGATCCAATGGCTATAATCTGCCCCAAG
65 ATTGACTGATGGTGATCTGCCCTAAGCTCGGGGTAAAAGATCCAAAGACTATAATCTACCCCAAG
*
86764 CTCGGGGTAAGAGATTGACTGATGGTG
130 CTCAGGGTAAGAGATTGACTGATGGTG
* * * *
86791 ATCTGCCTCAAGCTCGGGGTAAGAGATTGAATGGCTGCAATCTGTCCCATGCTCGGGGTAAAAGA
1 ATCTGCCCCAAGCTCGGGGTAAGAGATTGAATGGCTGCAATCTGCCCCAAGCTCGGGGTAAGAGA
* *
86856 TTGACTG--GTTGATCTGCCAC-AAGCTCGAGGTAAAAGATC
66 TTGACTGATGGTGATCTGCC-CTAAGCTCGGGGTAAAAGATC
86895 GAATCTTCAA
Statistics
Matches: 226, Mismatches: 33, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
154 27 0.12
155 1 0.00
156 61 0.27
157 137 0.61
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (156 bp):
ATCTGCCCCAAGCTCGGGGTAAGAGATTGAATGGCTGCAATCTGCCCCAAGCTCGGGGTAAGAGA
TTGACTGATGGTGATCTGCCCTAAGCTCGGGGTAAAAGATCCAAAGACTATAATCTACCCCAAGC
TCAGGGTAAGAGATTGACTGATGGTG
Found at i:91726 original size:32 final size:32
Alignment explanation
Indices: 91685--91746 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
91675 GTCCCCATTG
91685 CCTTTGGCCTTGAATTGATTATTCCTCTTATA
1 CCTTTGGCCTTGAATTGATTATTCCTCTTATA
91717 CCTTTGGCCTTGAATTGATTATTCCTCTTA
1 CCTTTGGCCTTGAATTGATTATTCCTCTTA
91747 AAATGAATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.18, C:0.23, G:0.13, T:0.47
Consensus pattern (32 bp):
CCTTTGGCCTTGAATTGATTATTCCTCTTATA
Found at i:100430 original size:16 final size:16
Alignment explanation
Indices: 100409--100444 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
100399 TTTTGGTAAA
*
100409 GTTTGATCTCACTAAG
1 GTTTGATCTCACAAAG
*
100425 GTTTGATCTTACAAAG
1 GTTTGATCTCACAAAG
100441 GTTT
1 GTTT
100445 AAGGAGGACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (16 bp):
GTTTGATCTCACAAAG
Found at i:103323 original size:43 final size:43
Alignment explanation
Indices: 103176--103350 Score: 165
Period size: 43 Copynumber: 4.1 Consensus size: 43
103166 TTATGAGGAA
* * ** *
103176 AAACACCACTATAGAACATAATCTTTAGCGGA-GCTTTTATCAC
1 AAACACTACTAAAGAACATGGTCTTTAGC-GACGCTTTTCTCAC
** ** * * *
103219 AAATGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTCTCAC
1 AAACACTACTAAAGAACATGGTCTTTAGCGACGCTTTTCTCAC
*
103262 AAACACTGCTAAAGAACATGGTCTTTAGCGACGCTTTTCTCAC
1 AAACACTACTAAAGAACATGGTCTTTAGCGACGCTTTTCTCAC
** * *
103305 AAACGTTACTACAA-AACATGGTTTTTAGCGACGTTTTTCTCAC
1 AAACACTACTA-AAGAACATGGTCTTTAGCGACGCTTTTCTCAC
103348 AAA
1 AAA
103351 TGCCGTTAAA
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 1 0.01
43 108 0.97
44 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
AAACACTACTAAAGAACATGGTCTTTAGCGACGCTTTTCTCAC
Found at i:106288 original size:41 final size:36
Alignment explanation
Indices: 106243--106344 Score: 129
Period size: 34 Copynumber: 2.8 Consensus size: 36
106233 TAAGTGTCGT
106243 TAATGCTCTGACCTTTAGCGGTGCTTTCACATCAGCATCAC
1 TAATGCTCTGACCTTTAGCGGTGCTTT--CA--A-CATCAC
*
106284 TAATGCTCTGACCTTTAGCGGCGC-TT-AACATCAC
1 TAATGCTCTGACCTTTAGCGGTGCTTTCAACATCAC
106318 TAATGCTCTGACCTTTAGCGGTG-TTTC
1 TAATGCTCTGACCTTTAGCGGTGCTTTC
106345 CTCAAAAGCA
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
34 30 0.53
35 1 0.02
37 1 0.02
40 2 0.04
41 23 0.40
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (36 bp):
TAATGCTCTGACCTTTAGCGGTGCTTTCAACATCAC
Found at i:106384 original size:75 final size:75
Alignment explanation
Indices: 106243--106384 Score: 162
Period size: 75 Copynumber: 1.9 Consensus size: 75
106233 TAAGTGTCGT
** ** *
106243 TAATGCTCTGACCTTTAGCGGTGCTTTCACATCAGCATCACTAATGCTCTGACCTTTAGCGGCGC
1 TAATGCTCTGACCTTTAGCGGTGCTTTCACAAAAGCATCACTAATGCTCCAACCTTTAGCGACGC
106308 TTAACATCAC
66 TTAACATCAC
* * * * *
106318 TAATGCTCTGACCTTTAGCGGTG-TTTCCTCAAAAGCA-CAGTTAATGCTCCAACTTTTCGTGAC
1 TAATGCTCTGACCTTTAGCGGTGCTTT-CACAAAAGCATCA-CTAATGCTCCAACCTTTAGCGAC
106381 GCTT
64 GCTT
106385 TCTCGTAAAC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
74 5 0.09
75 50 0.91
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (75 bp):
TAATGCTCTGACCTTTAGCGGTGCTTTCACAAAAGCATCACTAATGCTCCAACCTTTAGCGACGC
TTAACATCAC
Found at i:106501 original size:41 final size:41
Alignment explanation
Indices: 106317--106504 Score: 155
Period size: 41 Copynumber: 4.6 Consensus size: 41
106307 CTTAACATCA
* * * * * *
106317 CTAATGCTCTGACCTTTAGCGGTGTTTCCTCAAAAGCACAG
1 CTAATGCTCTGACTTTTAGCAGCGCTTCCTCATAAGCACCG
* ** * * * * * *
106358 TTAATGCTCCAACTTTTCG-TGACGCTTTCTCGTAAACGCCG
1 CTAATGCTCTGACTTTTAGCAG-CGCTTCCTCATAAGCACCG
* * **
106399 CTAATGCTCCGACTTTTAGCGGCGCTTCCTCATAAGTGCCG
1 CTAATGCTCTGACTTTTAGCAGCGCTTCCTCATAAGCACCG
*
106440 CTAATGCT-TCGACTTTTAGCAGCGCTTCCTCATAAGCACCT
1 CTAATGCTCT-GACTTTTAGCAGCGCTTCCTCATAAGCACCG
*
106481 CTAATGCTCTGACCTTTAGCAGCG
1 CTAATGCTCTGACTTTTAGCAGCG
106505 TTTTATAGAA
Statistics
Matches: 115, Mismatches: 28, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
40 1 0.01
41 112 0.97
42 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.31
Consensus pattern (41 bp):
CTAATGCTCTGACTTTTAGCAGCGCTTCCTCATAAGCACCG
Found at i:106556 original size:40 final size:40
Alignment explanation
Indices: 106506--106668 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
106496 TTAGCAGCGT
* *
106506 TTTATAGAAAAACGCCGCTATTGCTTTACCTTTTAGGGCA
1 TTTATGGAAAAACGCCGCTATTGCTTTACCTTTTAGGGCG
* *
106546 TTTATGGAAAAATGCTGCTATTGCTTTACCTTTT-GCGGCG
1 TTTATGGAAAAACGCCGCTATTGCTTTACCTTTTAG-GGCG
* *
106586 TTTATGGAAAAACGCCGTTATTGCTTTACCTTTTACGGCG
1 TTTATGGAAAAACGCCGCTATTGCTTTACCTTTTAGGGCG
* * *
106626 TTTATGGAAAAACACCGCTATTTCTTTA-CTTTTTGCGGCG
1 TTTATGGAAAAACGCCGCTATTGCTTTACCTTTTAG-GGCG
106666 TTT
1 TTT
106669 TCTGTCCAAA
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 6 0.06
40 101 0.94
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (40 bp):
TTTATGGAAAAACGCCGCTATTGCTTTACCTTTTAGGGCG
Found at i:106608 original size:80 final size:80
Alignment explanation
Indices: 106492--106668 Score: 246
Period size: 80 Copynumber: 2.2 Consensus size: 80
106482 TAATGCTCTG
* * *
106492 ACCTTTAGCAGCGTTTTATAGAAAAACGCCGCTATTGCTTTACCTTTTAGGGCATTTATGGAAAA
1 ACCTTTTGCGGCG-TTTATAGAAAAACGCCGCTATTGCTTTACCTTTTACGGCATTTATGGAAAA
** *
106557 ATGCTGCTATTGCTTT
65 ACACCGCTATTGCTTT
* * *
106573 ACCTTTTGCGGCGTTTATGGAAAAACGCCGTTATTGCTTTACCTTTTACGGCGTTTATGGAAAAA
1 ACCTTTTGCGGCGTTTATAGAAAAACGCCGCTATTGCTTTACCTTTTACGGCATTTATGGAAAAA
*
106638 CACCGCTATTTCTTT
66 CACCGCTATTGCTTT
*
106653 ACTTTTTGCGGCGTTT
1 ACCTTTTGCGGCGTTT
106669 TCTGTCCAAA
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 74 0.87
81 11 0.13
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (80 bp):
ACCTTTTGCGGCGTTTATAGAAAAACGCCGCTATTGCTTTACCTTTTACGGCATTTATGGAAAAA
CACCGCTATTGCTTT
Found at i:107857 original size:8 final size:9
Alignment explanation
Indices: 107835--107859 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
107825 TAAAAAACAT
107835 CTTTTTACA
1 CTTTTTACA
107844 CTTTTTACA
1 CTTTTTACA
107853 CTTTTTA
1 CTTTTTA
107860 TTCAACATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.60
Consensus pattern (9 bp):
CTTTTTACA
Found at i:109707 original size:11 final size:11
Alignment explanation
Indices: 109691--109719 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
109681 TATATATTAT
109691 AAATTATAAAG
1 AAATTATAAAG
109702 AAATTAT-AAG
1 AAATTATAAAG
109712 AAATTATA
1 AAATTATA
109720 CAAGTACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (11 bp):
AAATTATAAAG
Done.