Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011861.1 Kokia drynarioides strain JFW-HI SEQ_126858, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2134
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34


Found at i:1433 original size:18 final size:17

Alignment explanation


    Indices: 1407--1444  Score: 58
    Period size: 18  Copynumber: 2.2  Consensus size: 17

       1397 ATTGAAGACG

                *             
       1407 ATAACATAATTTAATAAT
          1 ATAAAATAATTTAA-AAT

                             
       1425 ATAAAATAATTTAAAAT
          1 ATAAAATAATTTAAAAT

               
       1442 ATA
          1 ATA

       1445 TATTAAAAAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  17    6  0.32
  18   13  0.68

ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37


Consensus pattern (17 bp):   
ATAAAATAATTTAAAAT
Done.