Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011862.1 Kokia drynarioides strain JFW-HI SEQ_126859, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8324
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.34

Warning! 125 characters in sequence are not A, C, G, or T


Found at i:1208 original size:23 final size:23

Alignment explanation


    Indices: 1159--1224  Score: 68
    Period size: 23  Copynumber: 3.0  Consensus size: 23

       1149 TGGTATCAAC

                 *                 
       1159 TTATTCAAT-TATT-TTTTATTG
          1 TTATTTAATATATTATTTTATTG

                                    
       1180 TT-TTTAATATATTATTATTATT-
          1 TTATTTAATATATTATT-TTATTG

                    *              
       1202 TTATTTAAAATATTAATTTTATT
          1 TTATTTAATATATT-ATTTTATT

       1225 ATAACTAATA


Statistics
Matches: 38,  Mismatches: 2, Indels: 8
        0.79            0.04        0.17

Matches are distributed among these distances:
  20    5  0.13
  21    6  0.16
  22    4  0.11
  23   20  0.53
  24    3  0.08

ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65


Consensus pattern (23 bp):   
TTATTTAATATATTATTTTATTG

Found at i:4508 original size:18 final size:20

Alignment explanation


    Indices: 4470--4508  Score: 55
    Period size: 18  Copynumber: 2.0  Consensus size: 20

       4460 TCATCTTTCT

                                
       4470 AATATATAAATATAAGAGAA
          1 AATATATAAATATAAGAGAA

                            *   
       4490 AATA-ATAAA-ATAAGTGAA
          1 AATATATAAATATAAGAGAA

             
       4508 A
          1 A

       4509 GAACAATTAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  18    9  0.50
  19    5  0.28
  20    4  0.22

ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23


Consensus pattern (20 bp):   
AATATATAAATATAAGAGAA

Found at i:6678 original size:5 final size:5

Alignment explanation


    Indices: 6668--6693  Score: 52
    Period size: 5  Copynumber: 5.2  Consensus size: 5

       6658 ATTGAGAGCA

                                           
       6668 ACATC ACATC ACATC ACATC ACATC A
          1 ACATC ACATC ACATC ACATC ACATC A

       6694 TTTAATTTAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.42, C:0.38, G:0.00, T:0.19


Consensus pattern (5 bp):   
ACATC

Done.