genome.fa.s1187.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01001187.1 Kokia drynarioides strain JFW-HI SEQ_112522, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74489

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3640--3674	17	2.1	16	89	5	52	48	14	0	37	1.44
8599--8626	14	2.0	14	100	0	56	50	0	7	42	1.30
10503--10535	14	2.4	14	90	10	50	48	3	0	48	1.17
11166--11221	28	1.9	29	92	7	96	55	3	1	39	1.28
11175--11233	28	2.1	28	87	3	84	64	3	1	30	1.20
23091--23145	15	3.7	15	76	16	60	52	0	0	47	1.00
25875--26100	43	5.3	43	87	2	328	27	30	19	23	1.98
29525--29758	123	1.9	123	86	0	333	17	23	21	37	1.94
29519--29762	41	6.0	41	84	1	283	18	24	21	36	1.95
31469--31595	58	2.2	59	83	12	156	22	14	3	59	1.49
47633--47681	24	2.0	24	88	0	71	44	8	2	44	1.45
47709--47734	2	13.0	2	100	0	52	50	0	0	50	1.00
48486--48577	30	3.1	29	78	4	94	45	20	4	29	1.70
50781--50835	20	2.7	21	86	8	78	40	18	25	16	1.91
54083--54147	11	5.8	11	81	3	85	83	0	15	1	0.73
54092--54147	18	3.3	18	80	7	64	82	0	16	1	0.76
54083--54146	29	2.2	29	83	8	85	84	0	14	1	0.70
54085--54122	7	5.3	7	87	6	58	86	0	13	0	0.56
55137--55269	49	2.7	49	81	4	135	36	18	24	21	1.94
55545--55689	45	3.2	46	81	5	163	31	22	22	23	1.99
55748--55846	37	2.7	37	92	3	157	33	20	25	21	1.97
55943--56354	85	5.0	85	70	11	305	37	17	21	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55942--56423	245	2.0	246	91	1	779	37	17	21	23	1.94
56188--56563	209	1.8	208	87	4	560	38	16	21	24	1.93
56444--56600	37	3.9	37	75	16	152	35	15	22	26	1.94
56396--56638	85	2.9	85	88	2	337	36	14	22	26	1.93
56149--56762	294	2.1	293	86	2	829	37	16	21	24	1.94
57542--57585	18	2.4	18	84	0	61	43	9	9	38	1.68
58423--58586	60	2.8	60	85	2	215	42	23	5	28	1.76
58421--58610	59	3.2	58	81	8	211	42	24	5	27	1.76
58417--58605	30	6.4	29	72	11	150	41	25	5	27	1.76
61607--61653	3	15.7	3	100	0	94	65	0	0	34	0.93
62347--62421	33	2.3	32	77	6	89	24	2	20	53	1.58
63115--63148	17	2.0	17	88	0	50	23	0	5	70	1.09
63284--63330	21	2.2	22	81	11	53	25	4	2	68	1.19
64141--64284	72	2.0	70	81	7	166	15	8	15	60	1.57
71977--72073	43	2.2	43	83	3	113	51	13	16	17	1.75
72067--72092	1	26.0	1	100	0	52	100	0	0	0	0.00
73023--73413	49	8.0	49	77	5	315	40	20	22	16	1.91
74244--74271	13	2.2	13	100	0	56	46	0	7	46	1.30

Tables:   1

The End!