Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011871.1 Kokia drynarioides strain JFW-HI SEQ_126868, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 828

Length: 1381
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41


Found at i:44 original size:30 final size:30

Alignment explanation


    Indices: 4--97  Score: 152
    Period size: 30  Copynumber: 3.1  Consensus size: 30

          1 AAA

                                         *
          4 TTTCCAAAAATTTGAATTTAACCCTCAAAT
          1 TTTCCAAAAATTTGAATTTAACCCTCAAAC

               *         *   *            
         34 TTTTCAAAAATTTAAATATAACCCTCAAAC
          1 TTTCCAAAAATTTGAATTTAACCCTCAAAC

                                          
         64 TTTCCAAAAATTTGAATTTAACCCTCAAAC
          1 TTTCCAAAAATTTGAATTTAACCCTCAAAC

                
         94 TTTC
          1 TTTC

         98 TAAACTTTCC


Statistics
Matches: 57,  Mismatches: 7, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   57  1.00

ACGTcount: A:0.40, C:0.21, G:0.02, T:0.36


Consensus pattern (30 bp):   
TTTCCAAAAATTTGAATTTAACCCTCAAAC

Done.