Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011875.1 Kokia drynarioides strain JFW-HI SEQ_126872, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2680
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35


Found at i:489 original size:44 final size:44

Alignment explanation


    Indices: 426--510  Score: 152
    Period size: 44  Copynumber: 1.9  Consensus size: 44

        416 CTAGTCCTTA

                     *                  *               
        426 TGTTACAATCTCGCTTATCCCGTGTCCTGAAATAGTGATAATTG
          1 TGTTACAATATCGCTTATCCCGTGTCCTAAAATAGTGATAATTG

                                                     
        470 TGTTACAATATCGCTTATCCCGTGTCCTAAAATAGTGATAA
          1 TGTTACAATATCGCTTATCCCGTGTCCTAAAATAGTGATAA

        511 GTTTTGGTAT


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  44   39  1.00

ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35


Consensus pattern (44 bp):   
TGTTACAATATCGCTTATCCCGTGTCCTAAAATAGTGATAATTG
Done.