genome.fa.s11876.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01011876.1 Kokia drynarioides strain JFW-HI SEQ_126873, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147952

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1926--2081	25	6.2	25	76	5	136	38	19	16	25	1.92
1926--2080	49	3.1	50	77	8	163	38	19	16	25	1.92
13788--13843	24	2.3	24	96	0	103	35	26	7	30	1.83
14969--15018	16	3.2	16	72	13	50	26	4	0	70	1.05
19670--19737	33	2.1	33	97	0	127	32	19	19	29	1.96
21111--21135	13	1.9	13	100	0	50	40	4	8	48	1.51
22532--22602	37	1.9	37	85	5	99	26	29	19	23	1.98
22645--22724	37	2.1	38	81	2	99	35	22	11	31	1.89
26689--26742	26	2.1	26	85	0	72	29	20	22	27	1.98
29547--29594	21	2.3	21	82	3	53	2	12	2	83	0.83
30634--30667	12	2.8	12	90	4	50	5	29	0	64	1.17
45112--45148	8	4.3	9	80	13	51	29	2	0	67	1.04
45094--45144	16	3.3	15	84	10	59	29	3	0	66	1.09
45094--45144	8	6.7	7	76	24	50	29	3	0	66	1.09
45110--45159	25	2.0	25	88	4	73	32	2	2	64	1.16
45107--45166	26	2.4	24	83	10	75	33	1	1	63	1.14
50265--50320	28	2.0	28	100	0	112	39	10	25	25	1.87
56928--56952	13	1.9	13	100	0	50	40	4	8	48	1.51
59044--59087	18	2.4	19	85	11	56	27	4	0	68	1.09
59055--59108	25	2.2	25	86	0	72	31	1	1	64	1.14
59987--60029	21	2.0	21	95	0	77	48	4	30	16	1.66
70834--70873	16	2.4	16	87	4	53	77	2	17	2	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72223--72294	26	2.8	26	82	4	83	30	22	20	26	1.98
73060--73330	101	2.7	101	82	1	328	35	18	18	27	1.95
73185--73395	52	4.2	50	71	12	178	36	18	18	26	1.94
73179--73497	153	2.1	150	83	4	392	35	19	19	26	1.95
73179--73548	153	2.4	152	81	5	360	35	19	18	26	1.95
73907--73955	18	2.8	18	87	3	64	63	12	2	22	1.39
76201--76253	18	2.9	18	83	5	63	26	1	3	67	1.17
78164--78202	19	1.9	19	85	10	51	28	12	10	48	1.74
82040--82107	22	3.0	22	75	12	75	35	10	11	42	1.76
82532--82907	198	1.9	197	90	2	594	32	14	11	41	1.81
87736--88487	102	7.5	101	81	5	366	27	18	18	35	1.94
87833--88520	102	6.8	102	81	5	729	27	18	18	35	1.94
88035--88199	50	3.3	49	71	9	134	24	18	21	35	1.95
89108--89225	20	5.9	20	80	0	119	48	10	16	24	1.77
95058--95103	21	2.2	21	81	14	51	60	4	6	28	1.40
95081--95136	24	2.3	25	78	12	71	66	1	10	21	1.32
96214--96258	24	1.9	24	90	4	74	17	0	35	46	1.49
98654--98702	20	2.5	20	80	12	57	65	0	4	30	1.11
101063--101105	20	2.2	19	88	12	61	55	2	13	27	1.51
103645--103696	22	2.4	21	81	15	61	23	17	0	59	1.37
103661--103704	22	2.0	22	86	8	63	25	15	0	59	1.37
103876--103941	32	2.1	32	83	11	82	31	3	0	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114169--114207	12	3.2	12	92	0	69	23	28	0	48	1.51
114169--114207	6	6.5	6	90	0	60	23	28	0	48	1.51
114150--114211	6	10.5	6	79	10	56	27	22	0	50	1.50
117615--117653	12	3.2	12	92	0	69	23	28	0	48	1.51
117615--117653	6	6.5	6	90	0	60	23	28	0	48	1.51
117596--117657	6	10.5	6	79	10	56	27	22	0	50	1.50
121336--121364	12	2.4	12	100	0	58	27	27	6	37	1.82
145144--145250	28	3.8	28	82	4	119	32	18	3	44	1.68
146559--146632	31	2.4	30	80	4	85	44	8	13	33	1.73
147073--147278	89	2.3	88	85	3	270	44	19	7	28	1.79
147454--147485	13	2.4	14	94	5	57	62	12	6	18	1.50

Tables:   1

The End!