Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01011877.1 Kokia drynarioides strain JFW-HI SEQ_126874, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2909
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Found at i:1304 original size:18 final size:18
Alignment explanation
Indices: 1281--1320 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
1271 TCTCTTGGTT
1281 CTTGGACGAACTTCCGAA
1 CTTGGACGAACTTCCGAA
1299 CTTGGACGAACTTCCGAA
1 CTTGGACGAACTTCCGAA
1317 CTTG
1 CTTG
1321 TCGAACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (18 bp):
CTTGGACGAACTTCCGAA
Found at i:1680 original size:216 final size:216
Alignment explanation
Indices: 1300--2899 Score: 1976
Period size: 216 Copynumber: 7.4 Consensus size: 216
1290 ACTTCCGAAC
* * * ** *
1300 TTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGCTTCTA-TTCCTTAAAGT
1 TTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTTTA-AATCCAGTTCCTTAAAGT
* * *
1364 ATGCAAGACGATCCAATCCTTCGAGCAA-TTTTCTGAACATTACATACTCGGGAAGTCGCATCAT
65 ATTCAAGACGATCCAATCCTTCGAGCAATTTTTC-GAACATTACATGCTAGGGAAGTCGCATCAT
* * * *
1428 TTGGTCTAAA-AGGTTTGTGATTTTGTAAATAAGTTTTGGCCTTTGAATTAAAAACTTATTTACG
129 TTGGTCTAAATA-GTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
*
1492 TGAGAATTGTTTCTCTCTTAGTTG
193 TGAGAATTGTTTCTCTCTTGGTTG
* * * * * *
1516 TTGGATGAACTTCCAAACTTGTTAAACTTTTACTAGTTATTTTTTAAATCCAGTTACTTAAAGTG
1 TTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTTTAAATCCAGTTCCTTAAAGTA
* * * * * * *
1581 TTCAAGACGATCCATTCCTTCGAGTAATTTTTCGATCATTCCATGCGAGGGAAATCGTATCATTT
66 TTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTAGGGAAGTCGCATCATTT
* *
1646 GGTCCAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGA
131 GGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * *
1711 GAATTGTGTCTCTCCTGGTTC
196 GAATTGTTTCTCTCTTGGTTG
* * * ** * * *
1732 TTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTAATGTA
1 TTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTTTAAATCCAGTTCCTTAAAGTA
* * * * *
1797 TTCAGGACGATCCAATCCTTCGAGCAATTTTTCAAACATTACTTGCTCGAGAAGTCGCATCATTT
66 TTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTAGGGAAGTCGCATCATTT
* * * * * *
1862 GGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTACATGA
131 GGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
1927 GAATTGTTTCTCTCTTGGTTG
196 GAATTGTTTCTCTCTTGGTTG
* * *
1948 TTGGACAAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTTTAAATCCAGTTCCCTAAAGTG
1 TTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTTTAAATCCAGTTCCTTAAAGTA
* * * * * * *
2013 TTCAAGACTATCCATTCCTTCGAGTAATTTTCCGAACATTCCATG-TGAGGGAAATCGTATCATT
66 TTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCT-AGGGAAGTCGCATCATT
* * *
2077 TGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTTGAATTAAAAACTTATTTACGAG
130 TGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* * *
2142 AGAATTGTGTCTCTATTGGTTC
195 AGAATTGTTTCTCTCTTGGTTG
* * * ** * *
2164 TTGGACGAACTTCTGAACTTGTCGAACTTTTACTAGTTCTTTTATAGCTTCGGTTCCTTAAAGTA
1 TTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTTTAAATCCAGTTCCTTAAAGTA
* * * *
2229 TGCAAGATGATCCAATCCTTCGAGCAA-TTTTCTAAACATTACATGCTTGGGAAGTCGCATCATT
66 TTCAAGACGATCCAATCCTTCGAGCAATTTTTC-GAACATTACATGCTAGGGAAGTCGCATCATT
*
2293 TGGTCTAAA-AGGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
130 TGGTCTAAATA-GTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
2357 GAGAATTGTTTCTCT-TTCGGTTG
194 GAGAATTGTTTCTCTCTT-GGTTG
* *
2380 TTGGACAAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTTTAAATCCAGTTCCTTAAAGTG
1 TTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTTTAAATCCAGTTCCTTAAAGTA
* * * * * *
2445 TTCAAGACGATTCATTCCTTCGAGTAATTTTTCGAACATTGA-ATGCGAGGGAAATCACATCATT
66 TTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATT-ACATGCTAGGGAAGTCGCATCATT
*
2509 TGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTG
130 TGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
* *
2574 AGAATTGTGTCTCTCTTGGTTC
195 AGAATTGTTTCTCTCTTGGTTG
* * * * ** * *
2596 CTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGCTTC-GATTCCTTAATGT
1 TTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTTTAAATCCAG-TTCCTTAAAGT
* * * * * * *
2660 ATTGAGGATGATCCAATCCTTCGAGCAATTTTTCAAACATTACTTGCTCGGGAAGTCCCATCATT
65 ATTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTAGGGAAGTCGCATCATT
* * * *
2725 TGGTCTAAAAAGTTTTTCATTTTGCAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTT
130 TGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
*
2790 AGAATTGTTTCTCTCTTTGTTG
195 AGAATTGTTTCTCTCTTGGTTG
* * * * * ** * *
2812 TTGGACGAGCTTACAAAATTGTCAATCTTTTACGCGTTCTTTTTTAAATCCGGTTCCTTAAAGTG
1 TTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTTTAAATCCAGTTCCTTAAAGTA
*
2877 TTCAAGACGATCCATTCCTTCGA
66 TTCAAGACGATCCAATCCTTCGA
2900 TTAATTTTCT
Statistics
Matches: 1167, Mismatches: 202, Indels: 30
0.83 0.14 0.02
Matches are distributed among these distances:
215 13 0.01
216 1137 0.97
217 17 0.01
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (216 bp):
TTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTTTAAATCCAGTTCCTTAAAGTA
TTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTAGGGAAGTCGCATCATTT
GGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
GAATTGTTTCTCTCTTGGTTG
Found at i:2102 original size:432 final size:432
Alignment explanation
Indices: 1299--2908 Score: 2571
Period size: 432 Copynumber: 3.7 Consensus size: 432
1289 AACTTCCGAA
*
1299 CTTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGCTTCTATTCCTTAAAGT
1 CTTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGCTTCGATTCCTTAAAGT
* *
1364 ATGCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATACTCGGGAAGTCGCATCATT
66 ATGCAAGACGATCCAATCCTTCGAGCAATTTTCTAAACATTACATGCTCGGGAAGTCGCATCATT
* * * *
1429 TGGTCTAAAAGGTTTGTGATTTTGTAAATAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTG
131 TGGTCTAAAAAGTTTGTCATTTTGCAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTG
* ** * *
1494 AGAATTGTTTCTCTCTTAGTTGTTGGATGAACTTCCAAACTTGTTAAACTTTTACTAGTTATTTT
196 AGAATTGTTTCTCTCTTGGTTGTTGGACAAACTTCCAAACTTGTCAAACTTTTACTAGTTCTTTT
* * *
1559 TTAAATCCAGTTACTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCGATCATTCCA
261 TTAAATCCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCGAACATTCCA
*
1624 TGCGAGGGAAATCGTATCATTTGGTCCAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTTG
326 TGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTTG
*
1689 AATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCCTGGTT
391 AATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
* *
1731 CTTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTAATGT
1 CTTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGCTTCGATTCCTTAAAGT
* * * *
1796 ATTCAGGACGATCCAATCCTTCGAGCAATTTT-TCAAACATTACTTGCTCGAGAAGTCGCATCAT
66 ATGCAAGACGATCCAATCCTTCGAGCAATTTTCT-AAACATTACATGCTCGGGAAGTCGCATCAT
* *
1860 TTGGTCTAAAAAGTTTGTCATTTTGCAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTACAT
130 TTGGTCTAAAAAGTTTGTCATTTTGCAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGT
*
1925 GAGAATTGTTTCTCTCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTT
195 GAGAATTGTTTCTCTCTTGGTTGTTGGACAAACTTCCAAACTTGTCAAACTTTTACTAGTTCTTT
* *
1990 TTTAAATCCAGTTCCCTAAAGTGTTCAAGACTATCCATTCCTTCGAGTAATTTTCCGAACATTCC
260 TTTAAATCCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCGAACATTCC
* *
2055 ATGTGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTT
325 ATGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTT
* *
2120 GAATTAAAAACTTATTTACGAGAGAATTGTGTCTCTATTGGTT
390 GAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
* * *
2163 CTTGGACGAACTTCTGAACTTGTCGAACTTTTACTAGTTCTTTTATAGCTTCGGTTCCTTAAAGT
1 CTTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGCTTCGATTCCTTAAAGT
* *
2228 ATGCAAGATGATCCAATCCTTCGAGCAATTTTCTAAACATTACATGCTTGGGAAGTCGCATCATT
66 ATGCAAGACGATCCAATCCTTCGAGCAATTTTCTAAACATTACATGCTCGGGAAGTCGCATCATT
* * *
2293 TGGTCTAAAAGGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
131 TGGTCTAAAAAGTTTGTCATTTTGCAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTG
*
2358 AGAATTGTTTCTCT-TTCGGTTGTTGGACAAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTT
196 AGAATTGTTTCTCTCTT-GGTTGTTGGACAAACTTCCAAACTTGTCAAACTTTTACTAGTTCTTT
* * **
2422 TTTAAATCCAGTTCCTTAAAGTGTTCAAGACGATTCATTCCTTCGAGTAATTTTTCGAACATTGA
260 TTTAAATCCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCGAACATTCC
**
2487 ATGCGAGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTT
325 ATGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTT
2552 GAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
390 GAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
* *
2595 CCTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGCTTCGATTCCTTAATGT
1 CTTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGCTTCGATTCCTTAAAGT
* * * *
2660 ATTG-AGGATGATCCAATCCTTCGAGCAATTTT-TCAAACATTACTTGCTCGGGAAGTCCCATCA
66 A-TGCAAGACGATCCAATCCTTCGAGCAATTTTCT-AAACATTACATGCTCGGGAAGTCGCATCA
*
2723 TTTGGTCTAAAAAGTTTTTCATTTTGCAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACG
129 TTTGGTCTAAAAAGTTTGTCATTTTGCAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACG
* * * * * * * **
2788 TTAGAATTGTTTCTCTCTTTGTTGTTGGACGAGCTTACAAAATTGTCAATCTTTTACGCGTTCTT
194 TGAGAATTGTTTCTCTCTTGGTTGTTGGACAAACTTCCAAACTTGTCAAACTTTTACTAGTTCTT
* *
2853 TTTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGATTAATTTTC
259 TTTTAAATCCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTC
2909 T
Statistics
Matches: 1087, Mismatches: 85, Indels: 12
0.92 0.07 0.01
Matches are distributed among these distances:
431 4 0.00
432 1078 0.99
433 5 0.00
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (432 bp):
CTTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGCTTCGATTCCTTAAAGT
ATGCAAGACGATCCAATCCTTCGAGCAATTTTCTAAACATTACATGCTCGGGAAGTCGCATCATT
TGGTCTAAAAAGTTTGTCATTTTGCAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTG
AGAATTGTTTCTCTCTTGGTTGTTGGACAAACTTCCAAACTTGTCAAACTTTTACTAGTTCTTTT
TTAAATCCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCGAACATTCCA
TGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTTG
AATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTT
Found at i:2554 original size:648 final size:644
Alignment explanation
Indices: 1026--2909 Score: 2244
Period size: 648 Copynumber: 2.9 Consensus size: 644
1016 TGAAAAAGGC
* * ** *
1026 AATT-AAAACTTATTTACGTGAGAATTGATTCTCTCTT-GGTTATTGGATGAACTTAAGAAATTG
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-TTCGGTTATTGGACGAACTTCCGAACTTG
* * * *
1089 TCAAACTTTTAAGAGTTC-TTTTTAAATCCAGTTCCTTAAAGTGTTCAAGATGATCCATTACTTT
65 TCAAACTTTTACGAGTTCTTTTTTAAATCCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTC
* *
1153 GAGTAATTTTTCGAACATTCCATGCGAGGGAAATTGCATCATTTGGTCTAAATAGTTTTTCATTT
130 GAGTAATTTTTCGAACATT-AATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTT
*
1218 TGTAAACATGTTTTGACCTTTGAATTAAAAACTTA-TTA-AGTGAGAATTGTTTCTCTCTTGGTT
194 TGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACA-TGAGAATTG-TT-TCTC-----T
1281 CTTGGACGAACTTCCGAACTTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATA
251 CTT-G--G---TT--G---TTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATA
** * * * *
1346 GCTTCTA-TTCCTTAAAGTATGCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATA
305 -AATCCAGTTCCTTAAAGTATTCAAGACTATCCAATCCTTCGAGCAATTTTCCGAACATTACAT-
* * * *
1410 CTCGGGAAGTCGCATCATTTGGTCTAAAAGGTTTGTGATTTTGTAAATAAGTTTTGGCCTTTGAA
368 GTCGGGAAGTCGCATCATTTGGTCTAAAA-GTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAA
* *
1475 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTGTTGGATGAACTTCCAAACTTGTTA
432 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTGTTGGACGAACTT-CAAACTTG-TC
* * *
1540 AACTTTTACTAGTTATTTTTTAAATCCAGTTACTTAAAGTGTTCAAGACGATCCATTCCTTCGAG
495 AACTTTTACTAGTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAG
* * * * *
1605 TAATTTT-TCGATCATTCCATGCGAGGGAAATCGTATCATTTGGTCCAAATAGTTTTTCATTTTG
560 TAATTTTCTCAAACATTACATGCGAGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTG
1669 TAAACAAGTTTTGATCTTTG
625 TAAACAAGTTTTGATCTTTG
* * *
1689 AATTAAAAACTTATTTACGTGAGAATTGTGTCTC-TCCTGGTTCTTGGACGAACTTCCGAACTTG
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTC-GGTTATTGGACGAACTTCCGAACTTG
* * ** * * * * * *
1753 TCGAACTTTTACGAGTTCTTTTATAGCTTCGGTTCCTTAATGTATTCAGGACGATCCAATCCTTC
65 TCAAACTTTTACGAGTTCTTTTTTAAATCCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTC
* * * ** * * * *
1818 GAGCAATTTTTCAAACATTACTTGCTCGAGAAGTCGCATCATTTGGTCTAAAAAGTTTGTCATTT
130 GAGTAATTTTTCGAACATTA-ATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTT
* * *
1883 TGCAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTG
194 TGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTG
* * * * * *
1948 TTGGACAAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTTTAAATCCAGTTCCCTAAAGTG
259 TTGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAAATCCAGTTCCTTAAAGTA
* * * * * *
2013 TTCAAGACTATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGTGAGGGAAATCGTATCATTT
324 TTCAAGACTATCCAATCCTTCGAGCAATTTTCCGAACATTACATGT-CGGGAAGTCGCATCATTT
* ** *
2078 GGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTTGAATTAAAAACTTATTTACGAGA
388 GGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGA
* * * * * *
2143 GAATTGTGTCTCTATTGGTTCTTGGACGAACTTCTGAACTTGTCGAACTTTTACTAGTTCTTTTA
452 GAATTGTTTCTCTCTTAGTTGTTGGACGAACTTC-AAACTTGTC-AACTTTTACTAGTTCTTTTT
** * * * * * *
2208 TAGCTTCGGTTCCTTAAAGTATGCAAGATGATCCAATCCTTCGAGCAATTTTCT-AAACATTACA
515 TAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTCAAACATTACA
** * * *
2272 TGCTTGGGAAGTCGCATCATTTGGTCTAAA-AGGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
580 TGCGAGGGAAATCGCATCATTTGGTCCAAATA-GTTTGTCATTTTGTAAACAAGTTTTGATCTTT
2336 G
644 G
* *
2337 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTCGGTTGTTGGACAAACTTCCGAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTCGGTTATTGGACGAACTTCCGAACTTGT
* *
2402 CAAACTTTTACTAGTTCTTTTTTAAATCCAGTTCCTTAAAGTGTTCAAGACGATTCATTCCTTCG
66 CAAACTTTTACGAGTTCTTTTTTAAATCCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCG
*
2467 AGTAATTTTTCGAACATTGAATGCGAGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTT
131 AGTAATTTTTCGAACATT-AATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTT
* * * **
2532 GTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTTCC
195 GTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTGT
** * *
2597 TGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAGCTTC-GATTCCTTAATGTA
260 TGGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAAATCCAG-TTCCTTAAAGTA
* * * * * *
2661 TTGAGGA-TGATCCAATCCTTCGAGCAATTTTTCAAACATTACTTGCTCGGGAAGTCCCATCATT
324 TTCAAGACT-ATCCAATCCTTCGAGCAATTTTCCGAACATTACATG-TCGGGAAGTCGCATCATT
* *
2725 TGGTCTAAAAAGTTTTTCATTTTGCAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTT
387 TGGTCT-AAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTG
* * * **
2790 AGAATTGTTTCTCTCTTTGTTGTTGGACGAGCTTACAAAATTGTCAATCTTTTACGCGTTCTTTT
451 AGAATTGTTTCTCTCTTAGTTGTTGGACGAACTT-CAAACTTGTCAA-CTTTTACTAGTTCTTTT
*
2855 TTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGATTAATTTTCT
514 TTAAATCCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCT
Statistics
Matches: 1026, Mismatches: 173, Indels: 59
0.82 0.14 0.05
Matches are distributed among these distances:
647 11 0.01
648 790 0.77
649 10 0.01
651 1 0.00
653 2 0.00
656 1 0.00
658 1 0.00
659 4 0.00
662 1 0.00
663 4 0.00
664 68 0.07
665 120 0.12
666 12 0.01
667 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (644 bp):
AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTTTCGGTTATTGGACGAACTTCCGAACTTGT
CAAACTTTTACGAGTTCTTTTTTAAATCCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCG
AGTAATTTTTCGAACATTAATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
TAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTGTT
GGACGAACTTCCGAACTTGTCGAACTTTTACGAGTTCTTTTATAAATCCAGTTCCTTAAAGTATT
CAAGACTATCCAATCCTTCGAGCAATTTTCCGAACATTACATGTCGGGAAGTCGCATCATTTGGT
CTAAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAAT
TGTTTCTCTCTTAGTTGTTGGACGAACTTCAAACTTGTCAACTTTTACTAGTTCTTTTTTAAATC
CGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCTCAAACATTACATGCGAG
GGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTG
Done.