Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011885.1 Kokia drynarioides strain JFW-HI SEQ_126882, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7022
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.36

Warning! 123 characters in sequence are not A, C, G, or T


Found at i:1139 original size:24 final size:24

Alignment explanation


    Indices: 1077--1141  Score: 103
    Period size: 24  Copynumber: 2.7  Consensus size: 24

       1067 AATCTTTTAG

                          *         
       1077 TTAAACTCTATTTAATTGTTTCAA
          1 TTAAACTCTATTTATTTGTTTCAA

            *        *              
       1101 ATAAACTCTGTTTATTTGTTTCAA
          1 TTAAACTCTATTTATTTGTTTCAA

                             
       1125 TTAAACTCTATTTATTT
          1 TTAAACTCTATTTATTT

       1142 ATTTAAGTCA


Statistics
Matches: 36,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  24   36  1.00

ACGTcount: A:0.31, C:0.12, G:0.05, T:0.52


Consensus pattern (24 bp):   
TTAAACTCTATTTATTTGTTTCAA

Found at i:2093 original size:17 final size:17

Alignment explanation


    Indices: 2046--2100  Score: 67
    Period size: 17  Copynumber: 3.1  Consensus size: 17

       2036 AACATTACTT

                               
       2046 TTTTAAATATATTTTAAAA
          1 TTTTAAATA-ATTTT-AAA

                              
       2065 TTATTAAA-AATTTTAAA
          1 TT-TTAAATAATTTTAAA

                          *  
       2082 TTTTAAATAATTTTTAA
          1 TTTTAAATAATTTTAAA

              
       2099 TT
          1 TT

       2101 ATTTGTTGAC


Statistics
Matches: 33,  Mismatches: 1, Indels: 6
        0.82            0.03        0.15

Matches are distributed among these distances:
  16    5  0.15
  17   15  0.45
  18    5  0.15
  19    3  0.09
  20    5  0.15

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (17 bp):   
TTTTAAATAATTTTAAA
Done.