Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01011889.1 Kokia drynarioides strain JFW-HI SEQ_126886, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 720

Length: 1201
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34


Found at i:1162 original size:28 final size:28

Alignment explanation


    Indices: 1122--1177  Score: 103
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       1112 CTTTCCAGTG

                                  *     
       1122 GAGAAAGTTAACTTTCTCTATGTGGAAA
          1 GAGAAAGTTAACTTTCTCTATGGGGAAA

                                        
       1150 GAGAAAGTTAACTTTCTCTATGGGGAAA
          1 GAGAAAGTTAACTTTCTCTATGGGGAAA

       1178 ATCAAATAAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30


Consensus pattern (28 bp):   
GAGAAAGTTAACTTTCTCTATGGGGAAA
Done.